CircRNA Information

General Information
circRNA Basic Information
CircID chr20:419848|420131
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CATGCTGCTGGCAGTGACCCTGCACCTGGCTGTGACCCTGCACCTGGCTGTGACCTGCCCTCTCTCAAAGGTCACCCTGTGGCTGAGACCCGCTCCCTGGCTGTGGCGCACATCCAGGTTCACATGCCCCACTCCCACGTGGGCTGTGGCTCCATCCCCAGCTTTGACACACCACACGAGTATGGCTGGCCATGACCCCAGCACCCTAGCCATGACCCCAGCACCCTAGCCATGACCACACCTCAGCTCGGACCTCACCCCCACCCGTCTGTGACCTAAGCCTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:419848|420131 hsa-miR-15a-5p 0 0 1
chr20:419848|420131 hsa-miR-15a-3p 0 0 1
chr20:419848|420131 hsa-miR-107 0 0 1
chr20:419848|420131 hsa-miR-15b-5p 0 0 1
chr20:419848|420131 hsa-miR-15b-3p 0 0 1
chr20:419848|420131 hsa-miR-195-5p 0 0 1
chr20:419848|420131 hsa-miR-195-3p 0 0 1
chr20:419848|420131 hsa-miR-320a-5p 0 0 1
chr20:419848|420131 hsa-miR-320a-3p 0 0 1
chr20:419848|420131 hsa-miR-424-5p 0 0 1
chr20:419848|420131 hsa-miR-424-3p 0 0 1
chr20:419848|420131 hsa-miR-497-5p 0 0 1
chr20:419848|420131 hsa-miR-497-3p 0 0 1
chr20:419848|420131 hsa-miR-592 0 0 1
chr20:419848|420131 hsa-miR-597-5p 0 0 1
chr20:419848|420131 hsa-miR-597-3p 0 0 1
chr20:419848|420131 hsa-miR-619-5p 0 0 1
chr20:419848|420131 hsa-miR-619-3p 0 0 1
chr20:419848|420131 hsa-miR-662 1 0 1
chr20:419848|420131 hsa-miR-933 0 0 1
chr20:419848|420131 hsa-miR-1202 0 1 1
chr20:419848|420131 hsa-miR-1294 0 0 1
chr20:419848|420131 hsa-miR-486-3p 0 0 1
chr20:419848|420131 hsa-miR-615-3p 0 0 1
chr20:419848|420131 hsa-miR-615-5p 1 0 1
chr20:419848|420131 hsa-miR-490-3p 0 1 1
chr20:419848|420131 hsa-miR-330-3p 0 0 1
chr20:419848|420131 hsa-miR-483-5p 0 0 1
chr20:419848|420131 hsa-miR-320b 0 1 1
chr20:419848|420131 hsa-miR-320c 0 1 1
chr20:419848|420131 hsa-miR-320d 0 1 1
chr20:419848|420131 hsa-miR-103 0 0 1
chr20:419848|420131 hsa-miR-16 0 0 1
chr20:419848|420131 hsa-miR-220c 0 0 1
chr20:419848|420131 hsa-miR-608 1 0 0
chr20:419848|420131 hsa-miR-637 1 0 0
chr20:419848|420131 hsa-miR-663a 1 0 0
chr20:419848|420131 hsa-miR-762 1 0 0
chr20:419848|420131 hsa-miR-764 0 1 0
chr20:419848|420131 hsa-miR-1182 1 0 0
chr20:419848|420131 hsa-miR-1293 1 0 0
chr20:419848|420131 hsa-miR-1295a 1 0 0
chr20:419848|420131 hsa-miR-1268a 1 0 0
chr20:419848|420131 hsa-miR-1275 1 0 0
chr20:419848|420131 hsa-miR-1538 1 0 0
chr20:419848|420131 hsa-miR-4303 1 0 0
chr20:419848|420131 hsa-miR-4270 1 0 0
chr20:419848|420131 hsa-miR-4281 1 0 0
chr20:419848|420131 hsa-miR-3621 1 0 0
chr20:419848|420131 hsa-miR-3650 1 0 0
chr20:419848|420131 hsa-miR-3665 1 1 0
chr20:419848|420131 hsa-miR-3911 1 0 0
chr20:419848|420131 hsa-miR-1268b 1 0 0
chr20:419848|420131 hsa-miR-4429 0 1 0
chr20:419848|420131 hsa-miR-4440 1 1 0
chr20:419848|420131 hsa-miR-4462 1 0 0
chr20:419848|420131 hsa-miR-4466 1 0 0
chr20:419848|420131 hsa-miR-4488 1 0 0
chr20:419848|420131 hsa-miR-4505 1 0 0
chr20:419848|420131 hsa-miR-4507 1 0 0
chr20:419848|420131 hsa-miR-4636 0 1 0
chr20:419848|420131 hsa-miR-4651 1 0 0
chr20:419848|420131 hsa-miR-4656 1 0 0
chr20:419848|420131 hsa-miR-4663 1 0 0
chr20:419848|420131 hsa-miR-4721 1 0 0
chr20:419848|420131 hsa-miR-4736 0 1 0
chr20:419848|420131 hsa-miR-5090 1 0 0
chr20:419848|420131 hsa-miR-5572 1 1 0
chr20:419848|420131 hsa-miR-5787 1 1 0
chr20:419848|420131 hsa-miR-6069 1 1 0
chr20:419848|420131 hsa-miR-6090 1 0 0
chr20:419848|420131 hsa-miR-6745 1 0 0
chr20:419848|420131 hsa-miR-7704 1 0 0
chr20:419848|420131 hsa-miR-8077 1 0 0
chr20:419848|420131 hsa-miR-8089 1 0 0
chr20:419848|420131 hsa-miR-12122 1 1 0
chr20:419848|420131 hsa-miR-12127 1 0 0
chr20:419848|420131 hsa-miR-138-5p 1 0 0
chr20:419848|420131 hsa-miR-211-3p 1 0 0
chr20:419848|420131 hsa-miR-4433b-3p 1 1 0
chr20:419848|420131 hsa-miR-4731-5p 1 1 0
chr20:419848|420131 hsa-miR-7155-5p 1 1 0
chr20:419848|420131 hsa-miR-6747-5p 1 0 0
chr20:419848|420131 hsa-miR-6857-5p 0 1 0
chr20:419848|420131 hsa-miR-4687-3p 1 0 0
chr20:419848|420131 hsa-miR-139-3p 1 0 0
chr20:419848|420131 hsa-miR-3934-5p 1 0 0
chr20:419848|420131 hsa-miR-1227-5p 1 0 0
chr20:419848|420131 hsa-miR-6089 1 0 0
chr20:419848|420131 hsa-miR-6880-5p 1 0 0
chr20:419848|420131 hsa-miR-7160-5p 1 1 0
chr20:419848|420131 hsa-miR-6741-5p 1 0 0
chr20:419848|420131 hsa-miR-6721-5p 1 0 0
chr20:419848|420131 hsa-miR-1178-5p 0 1 0
chr20:419848|420131 hsa-miR-8069 1 0 0
chr20:419848|420131 hsa-miR-6742-5p 1 0 0
chr20:419848|420131 hsa-miR-491-5p 1 0 0
chr20:419848|420131 hsa-miR-3151-5p 0 1 0
chr20:419848|420131 hsa-miR-6772-5p 1 0 0
chr20:419848|420131 hsa-miR-6793-5p 1 0 0
chr20:419848|420131 hsa-miR-6796-5p 1 0 0
chr20:419848|420131 hsa-miR-6732-5p 1 0 0
chr20:419848|420131 hsa-miR-6805-5p 0 1 0
chr20:419848|420131 hsa-miR-6798-5p 1 0 0
chr20:419848|420131 hsa-miR-6881-5p 1 0 0
chr20:419848|420131 hsa-miR-6782-5p 1 0 0
chr20:419848|420131 hsa-miR-6821-5p 1 0 0
chr20:419848|420131 hsa-miR-3934-3p 1 0 0
chr20:419848|420131 hsa-miR-6786-5p 1 0 0
chr20:419848|420131 hsa-miR-6852-5p 1 0 0
chr20:419848|420131 hsa-miR-6835-5p 1 0 0
chr20:419848|420131 hsa-miR-7109-5p 1 0 0
chr20:419848|420131 hsa-miR-1226-5p 1 0 0
chr20:419848|420131 hsa-miR-1229-5p 1 1 0
chr20:419848|420131 hsa-miR-193b-5p 1 0 0
chr20:419848|420131 hsa-miR-4640-5p 1 0 0
chr20:419848|420131 hsa-miR-4691-3p 0 1 0
chr20:419848|420131 hsa-miR-30c-2-3p 0 1 0
chr20:419848|420131 hsa-miR-7161-3p 1 0 0
chr20:419848|420131 hsa-miR-1228-5p 1 0 0
chr20:419848|420131 hsa-miR-6823-5p 1 0 0
chr20:419848|420131 hsa-miR-4787-5p 1 0 0
chr20:419848|420131 hsa-miR-4446-3p 1 0 0
chr20:419848|420131 hsa-miR-3616-3p 0 1 0
chr20:419848|420131 hsa-miR-3162-5p 1 0 0
chr20:419848|420131 hsa-miR-6800-5p 1 0 0
chr20:419848|420131 hsa-miR-6886-5p 1 0 0
chr20:419848|420131 hsa-miR-3189-3p 1 0 0
chr20:419848|420131 hsa-miR-664b-5p 1 0 0
chr20:419848|420131 hsa-miR-3191-3p 1 0 0
chr20:419848|420131 hsa-miR-1250-5p 1 0 0
chr20:419848|420131 hsa-miR-1296-3p 0 1 0
chr20:419848|420131 hsa-miR-1207-5p 1 0 0
chr20:419848|420131 hsa-miR-1233-5p 1 0 0
chr20:419848|420131 hsa-miR-4763-3p 1 0 0
chr20:419848|420131 hsa-miR-6778-5p 1 0 0
chr20:419848|420131 hsa-miR-6787-5p 1 0 0
chr20:419848|420131 hsa-miR-6812-5p 1 1 0
chr20:419848|420131 hsa-miR-6816-5p 1 0 0
chr20:419848|420131 hsa-miR-6865-5p 1 0 0
chr20:419848|420131 hsa-miR-6870-5p 1 0 0
chr20:419848|420131 hsa-miR-6893-5p 1 1 0
chr20:419848|420131 hsa-miR-6775-5p 1 0 0
chr20:419848|420131 hsa-miR-1343-5p 1 0 0
chr20:419848|420131 hsa-miR-6726-5p 1 0 0
chr20:419848|420131 hsa-miR-6737-5p 1 0 0
chr20:419848|420131 hsa-miR-6743-5p 1 0 0
chr20:419848|420131 hsa-miR-6752-5p 1 1 0
chr20:419848|420131 hsa-miR-6754-5p 0 1 0
chr20:419848|420131 hsa-miR-6756-5p 1 1 0
chr20:419848|420131 hsa-miR-6803-5p 1 1 0
chr20:419848|420131 hsa-miR-6819-5p 1 0 0
chr20:419848|420131 hsa-miR-6842-5p 1 1 0
chr20:419848|420131 hsa-miR-7110-5p 1 1 0
chr20:419848|420131 hsa-miR-10401-5p 1 0 0
chr20:419848|420131 hsa-miR-6722-3p 1 0 0
chr20:419848|420131 hsa-miR-6751-5p 1 1 0
chr20:419848|420131 hsa-miR-6763-5p 1 0 0
chr20:419848|420131 hsa-miR-6779-5p 1 0 0
chr20:419848|420131 hsa-miR-6879-5p 0 1 0
chr20:419848|420131 hsa-miR-4728-5p 1 0 0
chr20:419848|420131 hsa-miR-6836-5p 1 0 0
chr20:419848|420131 hsa-miR-1237-5p 1 0 0
chr20:419848|420131 hsa-miR-1909-3p 1 0 0
chr20:419848|420131 hsa-miR-4632-5p 1 0 0
chr20:419848|420131 hsa-miR-4649-5p 1 0 0
chr20:419848|420131 hsa-miR-4685-5p 1 0 0
chr20:419848|420131 hsa-miR-4745-5p 1 1 0
chr20:419848|420131 hsa-miR-4749-5p 1 0 0
chr20:419848|420131 hsa-miR-6729-5p 1 0 0
chr20:419848|420131 hsa-miR-6735-5p 0 1 0
chr20:419848|420131 hsa-miR-6777-5p 1 0 0
chr20:419848|420131 hsa-miR-6846-5p 1 0 0
chr20:419848|420131 hsa-miR-6848-5p 1 0 0
chr20:419848|420131 hsa-miR-6889-5p 1 0 0
chr20:419848|420131 hsa-miR-939-5p 1 0 0
chr20:419848|420131 hsa-miR-4758-5p 1 0 0
chr20:419848|420131 hsa-miR-3940-5p 1 0 0
chr20:419848|420131 hsa-miR-30c-1-3p 0 1 0
chr20:419848|420131 hsa-miR-6856-5p 1 1 0
chr20:419848|420131 hsa-miR-7843-5p 0 1 0
chr20:419848|420131 hsa-miR-4665-5p 1 0 0
chr20:419848|420131 hsa-miR-6736-5p 1 0 0
chr20:419848|420131 hsa-miR-6855-5p 1 0 0
chr20:419848|420131 hsa-miR-4700-5p 0 1 0
chr20:419848|420131 hsa-miR-6766-5p 1 1 0
chr20:419848|420131 hsa-miR-6762-5p 1 0 0
chr20:419848|420131 hsa-miR-6718-5p 1 0 0
chr20:419848|420131 hsa-miR-664a-5p 1 0 0
chr20:419848|420131 hsa-miR-370-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr20:419848|420131
ORF Type ORF1
Protein Length 46
Nucleotide Length 141
Protein Sequence MPSLKGHPVAETRSLAVAHIQVHMPHSHVGCGSIPSFDTPHEYGWP
Nucleotide Sequence CTGCCCTCTCTCAAAGGTCACCCTGTGGCTGAGACCCGCTCCCTGGCTGTGGCGCACATCCAGGTTCACATGCCCCACTCCCACGTGGGCTGTGGCTCCATCCCCAGCTTTGACACACCACACGAGTATGGCTGGCCATGA
CircID chr20:419848|420131
ORF Type ORF2
Protein Length 75
Nucleotide Length 228
Protein Sequence MLLAVTLHLAVTLHLAVTCPLSKVTLWLRPAPWLWRTSRFTCPTPTWAVAPSPALTHHTSMAGHDPSTLAMTPAP
Nucleotide Sequence ATGCTGCTGGCAGTGACCCTGCACCTGGCTGTGACCCTGCACCTGGCTGTGACCTGCCCTCTCTCAAAGGTCACCCTGTGGCTGAGACCCGCTCCCTGGCTGTGGCGCACATCCAGGTTCACATGCCCCACTCCCACGTGGGCTGTGGCTCCATCCCCAGCTTTGACACACCACACGAGTATGGCTGGCCATGACCCCAGCACCCTAGCCATGACCCCAGCACCCTAG
CircID chr20:419848|420131
ORF Type ORF3
Protein Length 37
Nucleotide Length 114
Protein Sequence MARVLGSWLGCWGHGQPYSCGVSKLGMEPQPTWEWGM
Nucleotide Sequence ATGGCTAGGGTGCTGGGGTCATGGCTAGGGTGCTGGGGTCATGGCCAGCCATACTCGTGTGGTGTGTCAAAGCTGGGGATGGAGCCACAGCCCACGTGGGAGTGGGGCATGTGA
CircID chr20:419848|420131
ORF Type ORF4
Protein Length 42
Nucleotide Length 129
Protein Sequence MASHTRVVCQSWGWSHSPRGSGACEPGCAPQPGSGSQPQGDL
Nucleotide Sequence ATGGCCAGCCATACTCGTGTGGTGTGTCAAAGCTGGGGATGGAGCCACAGCCCACGTGGGAGTGGGGCATGTGAACCTGGATGTGCGCCACAGCCAGGGAGCGGGTCTCAGCCACAGGGTGACCTTTGA
CircID chr20:419848|420131
ORF Type ORF5
Protein Length 71
Nucleotide Length 213
Protein Sequence MARVLGSWPAILVWCVKAGDGATAHVGVGHVNLDVRHSQGAGLSHRVTFERGQVTARCRVTARCRVTASSM
Nucleotide Sequence ATGGCTAGGGTGCTGGGGTCATGGCCAGCCATACTCGTGTGGTGTGTCAAAGCTGGGGATGGAGCCACAGCCCACGTGGGAGTGGGGCATGTGAACCTGGATGTGCGCCACAGCCAGGGAGCGGGTCTCAGCCACAGGGTGACCTTTGAGAGAGGGCAGGTCACAGCCAGGTGCAGGGTCACAGCCAGGTGCAGGGTCACTGCCAGCAGCATG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab