CircRNA Information

General Information
circRNA Basic Information
CircID chr20:437017|437160
Strand +
CircType exon
Host Gene ENSG00000125875.12;
Algorism CIRI2;
Sequence ACTAAGCACTTTATTTTTATTTATTTTATTATTATTTTCTTTTTTCTGAGATGGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCAGTCTCAGCTCACTGCAACCTCCGCCTCCCAAGTTCAGGCAATTCTCGCTGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:437017|437160 hsa-miR-17-5p 0 0 1
chr20:437017|437160 hsa-miR-17-3p 0 0 1
chr20:437017|437160 hsa-miR-20a-5p 0 0 1
chr20:437017|437160 hsa-miR-20a-3p 0 0 1
chr20:437017|437160 hsa-miR-93-5p 0 0 1
chr20:437017|437160 hsa-miR-93-3p 0 0 1
chr20:437017|437160 hsa-miR-106a-5p 0 0 1
chr20:437017|437160 hsa-miR-106a-3p 0 0 1
chr20:437017|437160 hsa-miR-106b-5p 0 0 1
chr20:437017|437160 hsa-miR-106b-3p 0 0 1
chr20:437017|437160 hsa-miR-302a-5p 0 0 1
chr20:437017|437160 hsa-miR-302a-3p 0 0 1
chr20:437017|437160 hsa-miR-302b-5p 0 0 1
chr20:437017|437160 hsa-miR-302b-3p 0 0 1
chr20:437017|437160 hsa-miR-302c-5p 0 0 1
chr20:437017|437160 hsa-miR-302c-3p 0 0 1
chr20:437017|437160 hsa-miR-302d-5p 0 0 1
chr20:437017|437160 hsa-miR-302d-3p 0 0 1
chr20:437017|437160 hsa-miR-372-5p 0 0 1
chr20:437017|437160 hsa-miR-372-3p 0 0 1
chr20:437017|437160 hsa-miR-373-5p 0 0 1
chr20:437017|437160 hsa-miR-373-3p 0 0 1
chr20:437017|437160 hsa-miR-20b-5p 0 0 1
chr20:437017|437160 hsa-miR-20b-3p 0 0 1
chr20:437017|437160 hsa-miR-520e-5p 0 0 1
chr20:437017|437160 hsa-miR-520e-3p 0 0 1
chr20:437017|437160 hsa-miR-520f-5p 0 0 1
chr20:437017|437160 hsa-miR-520f-3p 0 0 1
chr20:437017|437160 hsa-miR-520b-5p 0 0 1
chr20:437017|437160 hsa-miR-520b-3p 0 0 1
chr20:437017|437160 hsa-miR-519d-5p 0 0 1
chr20:437017|437160 hsa-miR-519d-3p 0 0 1
chr20:437017|437160 hsa-miR-558 0 0 1
chr20:437017|437160 hsa-miR-612 0 1 1
chr20:437017|437160 hsa-miR-661 0 0 1
chr20:437017|437160 hsa-miR-658 0 0 1
chr20:437017|437160 hsa-miR-766-5p 0 0 1
chr20:437017|437160 hsa-miR-766-3p 0 0 1
chr20:437017|437160 hsa-miR-302e 0 0 1
chr20:437017|437160 hsa-miR-767-5p 0 0 1
chr20:437017|437160 hsa-miR-142-5p 0 0 1
chr20:437017|437160 hsa-miR-508-5p 0 1 1
chr20:437017|437160 hsa-miR-520d-3p 0 0 1
chr20:437017|437160 hsa-miR-520a-3p 0 0 1
chr20:437017|437160 hsa-miR-520c-3p 0 0 1
chr20:437017|437160 hsa-miR-548c-3p 0 0 1
chr20:437017|437160 hsa-miR-1285 0 0 1
chr20:437017|437160 hsa-miR-1201 0 0 1
chr20:437017|437160 hsa-miR-378b 0 1 0
chr20:437017|437160 hsa-miR-3174 0 1 0
chr20:437017|437160 hsa-miR-378c 0 1 0
chr20:437017|437160 hsa-miR-3689c 0 1 0
chr20:437017|437160 hsa-miR-4539 0 1 0
chr20:437017|437160 hsa-miR-4739 1 0 0
chr20:437017|437160 hsa-miR-5684 0 1 0
chr20:437017|437160 hsa-miR-6086 0 1 0
chr20:437017|437160 hsa-miR-6860 0 1 0
chr20:437017|437160 hsa-miR-7703 0 1 0
chr20:437017|437160 hsa-miR-6861-5p 1 1 0
chr20:437017|437160 hsa-miR-6720-5p 0 1 0
chr20:437017|437160 hsa-miR-7851-3p 0 1 0
chr20:437017|437160 hsa-miR-6849-3p 0 1 0
chr20:437017|437160 hsa-miR-3180-3p 0 1 0
chr20:437017|437160 hsa-miR-6798-5p 1 0 0
chr20:437017|437160 hsa-miR-6760-5p 1 0 0
chr20:437017|437160 hsa-miR-30b-3p 0 1 0
chr20:437017|437160 hsa-miR-3160-3p 0 1 0
chr20:437017|437160 hsa-miR-7112-3p 0 1 0
chr20:437017|437160 hsa-miR-4797-5p 0 1 0
chr20:437017|437160 hsa-miR-1273h-5p 0 1 0
chr20:437017|437160 hsa-miR-3689b-3p 0 1 0
chr20:437017|437160 hsa-miR-6787-5p 1 0 0
chr20:437017|437160 hsa-miR-6779-5p 0 1 0
chr20:437017|437160 hsa-miR-5189-5p 0 1 0
chr20:437017|437160 hsa-miR-3689a-3p 0 1 0
chr20:437017|437160 hsa-miR-4745-5p 1 0 0
chr20:437017|437160 hsa-miR-3187-5p 0 1 0
chr20:437017|437160 hsa-miR-6885-5p 1 0 0
chr20:437017|437160 hsa-miR-6856-5p 1 0 0
chr20:437017|437160 hsa-miR-1285-3p 1 1 0
chr20:437017|437160 hsa-miR-377-5p 0 1 0
chr20:437017|437160 hsa-miR-378a-3p 0 1 0
chr20:437017|437160 hsa-miR-6807-3p 0 1 0
chr20:437017|437160 hsa-miR-6864-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr20:437017|437160
ORF Type ORF1
Protein Length 33
Nucleotide Length 99
Protein Sequence MRWSLTLLPRLECSGAVSAHCNLRLPSSGNSRC
Nucleotide Sequence CTGAGATGGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCAGTCTCAGCTCACTGCAACCTCCGCCTCCCAAGTTCAGGCAATTCTCGCTGC
CircID chr20:437017|437160
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MESHSVAQAGVQWCSLSSLQPPPPKFRQFSL
Nucleotide Sequence ATGGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCAGTCTCAGCTCACTGCAACCTCCGCCTCCCAAGTTCAGGCAATTCTCGCTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab