CircRNA Information

General Information
circRNA Basic Information
CircID chr20:44112775|44112920
Strand -
CircType exon
Host Gene ENSG00000149596.6;
Algorism CIRI2;
Sequence CCCTCTTCCCACCCTGCCCCCTGGCCACCTGGTCAGTGGCTTCCCAGCCAGAGGATCCATGGGGTCTCCCCTCGTCTATTGGTCCAGAAGGGAAGCTAACTGGACTGGTGGGAGGAGACAGAGCACTGTGTTCTGGGATATTCAAA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:44112775|44112920 hsa-miR-204-5p 0 0 1
chr20:44112775|44112920 hsa-miR-204-3p 0 0 1
chr20:44112775|44112920 hsa-miR-211-5p 0 0 1
chr20:44112775|44112920 hsa-miR-211-3p 0 0 1
chr20:44112775|44112920 hsa-miR-149-5p 0 0 1
chr20:44112775|44112920 hsa-miR-149-3p 0 0 1
chr20:44112775|44112920 hsa-miR-422a 0 0 1
chr20:44112775|44112920 hsa-miR-623 0 0 1
chr20:44112775|44112920 hsa-miR-1237-5p 0 0 1
chr20:44112775|44112920 hsa-miR-1237-3p 0 0 1
chr20:44112775|44112920 hsa-miR-1299 0 0 1
chr20:44112775|44112920 hsa-miR-671-5p 0 1 1
chr20:44112775|44112920 hsa-miR-145-5p 0 0 1
chr20:44112775|44112920 hsa-miR-486-3p 0 0 1
chr20:44112775|44112920 hsa-miR-532-3p 0 0 1
chr20:44112775|44112920 hsa-miR-1224-3p 0 0 1
chr20:44112775|44112920 hsa-miR-490-5p 0 1 1
chr20:44112775|44112920 hsa-miR-1207-5p 0 1 1
chr20:44112775|44112920 hsa-miR-455-3p 0 0 1
chr20:44112775|44112920 hsa-miR-1260 0 0 1
chr20:44112775|44112920 hsa-miR-1280 0 0 1
chr20:44112775|44112920 hsa-miR-128 0 0 1
chr20:44112775|44112920 hsa-miR-378 0 0 1
chr20:44112775|44112920 hsa-miR-516b 0 0 1
chr20:44112775|44112920 hsa-miR-1260b 0 1 0
chr20:44112775|44112920 hsa-miR-4252 0 1 0
chr20:44112775|44112920 hsa-miR-4279 0 1 0
chr20:44112775|44112920 hsa-miR-128-3p 0 1 0
chr20:44112775|44112920 hsa-miR-3150a-3p 1 0 0
chr20:44112775|44112920 hsa-miR-6089 1 0 0
chr20:44112775|44112920 hsa-miR-769-5p 0 1 0
chr20:44112775|44112920 hsa-miR-181a-2-3p 0 1 0
chr20:44112775|44112920 hsa-miR-6805-5p 1 1 0
chr20:44112775|44112920 hsa-miR-6798-5p 1 1 0
chr20:44112775|44112920 hsa-miR-4786-3p 0 1 0
chr20:44112775|44112920 hsa-miR-4640-5p 1 1 0
chr20:44112775|44112920 hsa-miR-1228-5p 1 0 0
chr20:44112775|44112920 hsa-miR-4776-5p 1 1 0
chr20:44112775|44112920 hsa-miR-216a-3p 0 1 0
chr20:44112775|44112920 hsa-miR-589-3p 0 1 0
chr20:44112775|44112920 hsa-miR-3664-5p 0 1 0
chr20:44112775|44112920 hsa-miR-6865-5p 1 1 0
chr20:44112775|44112920 hsa-miR-6775-5p 0 1 0
chr20:44112775|44112920 hsa-miR-1343-5p 1 0 0
chr20:44112775|44112920 hsa-miR-6815-5p 0 1 0
chr20:44112775|44112920 hsa-miR-4755-5p 0 1 0
chr20:44112775|44112920 hsa-miR-328-5p 1 0 0
chr20:44112775|44112920 hsa-miR-1914-3p 1 0 0
chr20:44112775|44112920 hsa-miR-4646-5p 0 1 0
chr20:44112775|44112920 hsa-miR-6766-5p 0 1 0
chr20:44112775|44112920 hsa-miR-6805-3p 1 1 0
chr20:44112775|44112920 hsa-miR-3681-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr20:44112775|44112920
ORF Type ORF1
Protein Length 44
Nucleotide Length 132
Protein Sequence MPPGHLVSGFPARGSMGSPLVYWSRREANWTGGRRQSTVFWDIQ
Nucleotide Sequence CTGCCCCCTGGCCACCTGGTCAGTGGCTTCCCAGCCAGAGGATCCATGGGGTCTCCCCTCGTCTATTGGTCCAGAAGGGAAGCTAACTGGACTGGTGGGAGGAGACAGAGCACTGTGTTCTGGGATATTCAA

CircID chr20:44112775|44112920
ORF Type ORF2
Protein Length 42
Nucleotide Length 126
Protein Sequence MATWSVASQPEDPWGLPSSIGPEGKLTGLVGGDRALCSGIFK
Nucleotide Sequence CTGGCCACCTGGTCAGTGGCTTCCCAGCCAGAGGATCCATGGGGTCTCCCCTCGTCTATTGGTCCAGAAGGGAAGCTAACTGGACTGGTGGGAGGAGACAGAGCACTGTGTTCTGGGATATTCAAA

CircID chr20:44112775|44112920
ORF Type ORF3
Protein Length 48
Nucleotide Length 144
Protein Sequence LNIPEHSALSPPTSPVSFPSGPIDEGRPHGSSGWEATDQVARGQGGKR
Nucleotide Sequence TTGAATATCCCAGAACACAGTGCTCTGTCTCCTCCCACCAGTCCAGTTAGCTTCCCTTCTGGACCAATAGACGAGGGGAGACCCCATGGATCCTCTGGCTGGGAAGCCACTGACCAGGTGGCCAGGGGGCAGGGTGGGAAGAGG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites