CircRNA Information

General Information
circRNA Basic Information
CircID chr20:44907745|44907927
Strand +
CircType exon
Host Gene ENSG00000166913.11;
Algorism CIRI2;
Sequence CTGGTGACAGGCACAAAAAGCATGATCAGGGCTAGCCTCAATACAGGGAGAAATCATGGATATTTAAAAATACTTTTTTGATTCAGATTCCGGTATGACTGAAGAGCAACACCGTGTTGAGAACTGGAGGAAGACAGGGTTCTGGTGCCAGAAGCTCTTCTCCAATCTTTAAAGCCAGGCTTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:44907745|44907927 hsa-miR-10a-5p 0 0 1
chr20:44907745|44907927 hsa-miR-10a-3p 0 0 1
chr20:44907745|44907927 hsa-miR-10b-5p 0 0 1
chr20:44907745|44907927 hsa-miR-10b-3p 0 0 1
chr20:44907745|44907927 hsa-miR-620 0 0 1
chr20:44907745|44907927 hsa-miR-1226-5p 0 0 1
chr20:44907745|44907927 hsa-miR-1226-3p 0 0 1
chr20:44907745|44907927 hsa-miR-548l 0 0 1
chr20:44907745|44907927 hsa-miR-1304-5p 0 0 1
chr20:44907745|44907927 hsa-miR-1304-3p 0 0 1
chr20:44907745|44907927 hsa-miR-1253 0 0 1
chr20:44907745|44907927 hsa-miR-548n 0 0 1
chr20:44907745|44907927 hsa-miR-1270 0 0 1
chr20:44907745|44907927 hsa-miR-513c-5p 0 0 1
chr20:44907745|44907927 hsa-miR-513c-3p 0 0 1
chr20:44907745|44907927 hsa-miR-145-5p 0 1 1
chr20:44907745|44907927 hsa-miR-485-5p 1 1 1
chr20:44907745|44907927 hsa-miR-339-5p 1 1 1
chr20:44907745|44907927 hsa-miR-1274a 0 0 1
chr20:44907745|44907927 hsa-miR-550 0 0 1
chr20:44907745|44907927 hsa-miR-1274b 0 0 1
chr20:44907745|44907927 hsa-miR-129-3p 0 0 1
chr20:44907745|44907927 hsa-miR-554 1 0 0
chr20:44907745|44907927 hsa-miR-2113 0 1 0
chr20:44907745|44907927 hsa-miR-4277 0 1 0
chr20:44907745|44907927 hsa-miR-4516 0 1 0
chr20:44907745|44907927 hsa-miR-4531 0 1 0
chr20:44907745|44907927 hsa-miR-6128 0 1 0
chr20:44907745|44907927 hsa-miR-6765-5p 1 0 0
chr20:44907745|44907927 hsa-miR-1233-3p 0 1 0
chr20:44907745|44907927 hsa-miR-486-5p 1 0 0
chr20:44907745|44907927 hsa-miR-593-5p 0 1 0
chr20:44907745|44907927 hsa-miR-4783-3p 1 0 0
chr20:44907745|44907927 hsa-miR-1910-5p 1 0 0
chr20:44907745|44907927 hsa-miR-5197-3p 0 1 0
chr20:44907745|44907927 hsa-miR-6779-3p 0 1 0
chr20:44907745|44907927 hsa-miR-6732-3p 0 1 0
chr20:44907745|44907927 hsa-miR-3664-5p 0 1 0
chr20:44907745|44907927 hsa-miR-9851-3p 0 1 0
chr20:44907745|44907927 hsa-miR-5195-3p 0 1 0
chr20:44907745|44907927 hsa-miR-5699-3p 0 1 0
chr20:44907745|44907927 hsa-miR-655-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:44907745|44907927
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence LVTGTKSMIRASLNTGRNHGYLKILF
Nucleotide Sequence CTGGTGACAGGCACAAAAAGCATGATCAGGGCTAGCCTCAATACAGGGAGAAATCATGGATATTTAAAAATACTTTTTTGA
CircID chr20:44907745|44907927
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MTEEQHRVENWRKTGFWCQKLFSNL
Nucleotide Sequence ATGACTGAAGAGCAACACCGTGTTGAGAACTGGAGGAAGACAGGGTTCTGGTGCCAGAAGCTCTTCTCCAATCTTTAA
CircID chr20:44907745|44907927
ORF Type ORF3
Protein Length 28
Nucleotide Length 84
Protein Sequence MKSNTVLRTGGRQGSGARSSSPIFKARL
Nucleotide Sequence CTGAAGAGCAACACCGTGTTGAGAACTGGAGGAAGACAGGGTTCTGGTGCCAGAAGCTCTTCTCCAATCTTTAAAGCCAGGCTT
CircID chr20:44907745|44907927
ORF Type ORF4
Protein Length 33
Nucleotide Length 102
Protein Sequence MEKSFWHQNPVFLQFSTRCCSSVIPESESKKYF
Nucleotide Sequence TTGGAGAAGAGCTTCTGGCACCAGAACCCTGTCTTCCTCCAGTTCTCAACACGGTGTTGCTCTTCAGTCATACCGGAATCTGAATCAAAAAAGTATTTTTAA
CircID chr20:44907745|44907927
ORF Type ORF5
Protein Length 27
Nucleotide Length 84
Protein Sequence MSSSSSQHGVALQSYRNLNQKSIFKYP
Nucleotide Sequence CTGTCTTCCTCCAGTTCTCAACACGGTGTTGCTCTTCAGTCATACCGGAATCTGAATCAAAAAAGTATTTTTAAATATCCATGA
CircID chr20:44907745|44907927
ORF Type ORF6
Protein Length 31
Nucleotide Length 96
Protein Sequence MALKIGEELLAPEPCLPPVLNTVLLFSHTGI
Nucleotide Sequence CTGGCTTTAAAGATTGGAGAAGAGCTTCTGGCACCAGAACCCTGTCTTCCTCCAGTTCTCAACACGGTGTTGCTCTTCAGTCATACCGGAATCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab