CircRNA Information

General Information
circRNA Basic Information
CircID chr20:45425648|45425834
Strand -
CircType exon
Host Gene ENSG00000124155.15;
Algorism CIRI2;
Sequence CGGACTTCAGCATGCCCTACAACGTGATCTGCCTCACGTGCACTGTGGTGGCCGTGTGCTATGGCTCCTTCTACAATCTCCTCACCCGAACCTTCCACATCGAGGAGCCCCGCACAGGTGGCCTGGCCAAGCGGCTGGCCAACCTTATCCGGCGCGCCCGAGGTGTCCCCCCACTCTGATTCTTGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:45425648|45425834 hsa-miR-31-5p 0 0 1
chr20:45425648|45425834 hsa-miR-31-3p 0 0 1
chr20:45425648|45425834 hsa-miR-148a-5p 0 0 1
chr20:45425648|45425834 hsa-miR-148a-3p 0 0 1
chr20:45425648|45425834 hsa-miR-152-5p 0 0 1
chr20:45425648|45425834 hsa-miR-152-3p 0 0 1
chr20:45425648|45425834 hsa-miR-148b-5p 0 0 1
chr20:45425648|45425834 hsa-miR-148b-3p 0 0 1
chr20:45425648|45425834 hsa-miR-588 0 0 1
chr20:45425648|45425834 hsa-miR-147b-5p 0 0 1
chr20:45425648|45425834 hsa-miR-147b-3p 0 0 1
chr20:45425648|45425834 hsa-miR-744-5p 0 0 1
chr20:45425648|45425834 hsa-miR-744-3p 0 0 1
chr20:45425648|45425834 hsa-miR-1827 0 0 1
chr20:45425648|45425834 hsa-miR-140-3p 0 0 1
chr20:45425648|45425834 hsa-miR-508-3p 0 0 1
chr20:45425648|45425834 hsa-miR-128 0 0 1
chr20:45425648|45425834 hsa-miR-663a 1 0 0
chr20:45425648|45425834 hsa-miR-1262 1 1 0
chr20:45425648|45425834 hsa-miR-1321 1 0 0
chr20:45425648|45425834 hsa-miR-3178 0 1 0
chr20:45425648|45425834 hsa-miR-3911 1 0 0
chr20:45425648|45425834 hsa-miR-3689c 1 0 0
chr20:45425648|45425834 hsa-miR-4533 1 0 0
chr20:45425648|45425834 hsa-miR-4657 1 1 0
chr20:45425648|45425834 hsa-miR-4689 1 1 0
chr20:45425648|45425834 hsa-miR-4721 1 0 0
chr20:45425648|45425834 hsa-miR-4748 1 1 0
chr20:45425648|45425834 hsa-miR-4767 1 0 0
chr20:45425648|45425834 hsa-miR-4784 0 1 0
chr20:45425648|45425834 hsa-miR-5090 1 0 0
chr20:45425648|45425834 hsa-miR-5705 1 0 0
chr20:45425648|45425834 hsa-miR-6086 1 0 0
chr20:45425648|45425834 hsa-miR-6133 1 0 0
chr20:45425648|45425834 hsa-miR-12127 1 0 0
chr20:45425648|45425834 hsa-miR-4433b-3p 1 0 0
chr20:45425648|45425834 hsa-miR-139-5p 0 1 0
chr20:45425648|45425834 hsa-miR-6765-5p 1 0 0
chr20:45425648|45425834 hsa-miR-6825-5p 1 0 0
chr20:45425648|45425834 hsa-miR-125a-3p 1 0 0
chr20:45425648|45425834 hsa-miR-6799-5p 1 0 0
chr20:45425648|45425834 hsa-miR-6833-5p 1 1 0
chr20:45425648|45425834 hsa-miR-6515-5p 1 0 0
chr20:45425648|45425834 hsa-miR-3192-5p 1 0 0
chr20:45425648|45425834 hsa-miR-6880-5p 1 0 0
chr20:45425648|45425834 hsa-miR-7847-3p 1 0 0
chr20:45425648|45425834 hsa-miR-4761-3p 0 1 0
chr20:45425648|45425834 hsa-miR-6748-5p 1 0 0
chr20:45425648|45425834 hsa-miR-6793-5p 1 0 0
chr20:45425648|45425834 hsa-miR-3190-3p 1 1 0
chr20:45425648|45425834 hsa-miR-3194-5p 0 1 0
chr20:45425648|45425834 hsa-miR-3150b-3p 0 1 0
chr20:45425648|45425834 hsa-miR-6786-5p 1 0 0
chr20:45425648|45425834 hsa-miR-6740-5p 1 0 0
chr20:45425648|45425834 hsa-miR-3944-3p 1 0 0
chr20:45425648|45425834 hsa-miR-6784-5p 1 0 0
chr20:45425648|45425834 hsa-miR-4764-5p 1 0 0
chr20:45425648|45425834 hsa-miR-296-3p 1 0 0
chr20:45425648|45425834 hsa-miR-3202 1 0 0
chr20:45425648|45425834 hsa-miR-937-5p 1 0 0
chr20:45425648|45425834 hsa-miR-585-5p 0 1 0
chr20:45425648|45425834 hsa-miR-3191-3p 1 0 0
chr20:45425648|45425834 hsa-let-7c-5p 0 1 0
chr20:45425648|45425834 hsa-miR-4750-5p 0 1 0
chr20:45425648|45425834 hsa-miR-1914-5p 0 1 0
chr20:45425648|45425834 hsa-miR-4283 0 1 0
chr20:45425648|45425834 hsa-miR-576-3p 1 0 0
chr20:45425648|45425834 hsa-miR-1233-5p 1 0 0
chr20:45425648|45425834 hsa-miR-3689b-3p 1 0 0
chr20:45425648|45425834 hsa-miR-6778-5p 1 0 0
chr20:45425648|45425834 hsa-miR-6812-5p 1 0 0
chr20:45425648|45425834 hsa-miR-6756-5p 1 0 0
chr20:45425648|45425834 hsa-miR-6803-5p 1 0 0
chr20:45425648|45425834 hsa-miR-6851-5p 1 0 0
chr20:45425648|45425834 hsa-miR-6779-5p 1 0 0
chr20:45425648|45425834 hsa-miR-6780a-5p 1 0 0
chr20:45425648|45425834 hsa-miR-7111-5p 1 0 0
chr20:45425648|45425834 hsa-miR-4728-5p 1 0 0
chr20:45425648|45425834 hsa-miR-6780b-5p 1 0 0
chr20:45425648|45425834 hsa-miR-6862-5p 0 1 0
chr20:45425648|45425834 hsa-miR-10396a-5p 0 1 0
chr20:45425648|45425834 hsa-miR-328-5p 1 0 0
chr20:45425648|45425834 hsa-miR-3689a-3p 1 0 0
chr20:45425648|45425834 hsa-miR-4649-5p 1 0 0
chr20:45425648|45425834 hsa-miR-4725-3p 1 0 0
chr20:45425648|45425834 hsa-miR-4745-5p 1 1 0
chr20:45425648|45425834 hsa-miR-6729-5p 1 0 0
chr20:45425648|45425834 hsa-miR-675-5p 1 0 0
chr20:45425648|45425834 hsa-miR-6795-5p 1 1 0
chr20:45425648|45425834 hsa-miR-6858-5p 1 1 0
chr20:45425648|45425834 hsa-miR-6883-5p 1 0 0
chr20:45425648|45425834 hsa-miR-6887-5p 0 1 0
chr20:45425648|45425834 hsa-miR-6885-5p 1 0 0
chr20:45425648|45425834 hsa-miR-4758-5p 1 0 0
chr20:45425648|45425834 hsa-miR-10394-3p 1 1 0
chr20:45425648|45425834 hsa-miR-4665-5p 1 1 0
chr20:45425648|45425834 hsa-miR-135a-2-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr20:45425648|45425834
ORF Type ORF1
Protein Length 48
Nucleotide Length 144
Protein Sequence MWWPCAMAPSTISSPEPSTSRSPAQVAWPSGWPTLSGAPEVSPHSDSC
Nucleotide Sequence CTGTGGTGGCCGTGTGCTATGGCTCCTTCTACAATCTCCTCACCCGAACCTTCCACATCGAGGAGCCCCGCACAGGTGGCCTGGCCAAGCGGCTGGCCAACCTTATCCGGCGCGCCCGAGGTGTCCCCCCACTCTGATTCTTGC
CircID chr20:45425648|45425834
ORF Type ORF2
Protein Length 53
Nucleotide Length 159
Protein Sequence MPHVHCGGRVLWLLLQSPHPNLPHRGAPHRWPGQAAGQPYPARPRCPPTLILA
Nucleotide Sequence CTGCCTCACGTGCACTGTGGTGGCCGTGTGCTATGGCTCCTTCTACAATCTCCTCACCCGAACCTTCCACATCGAGGAGCCCCGCACAGGTGGCCTGGCCAAGCGGCTGGCCAACCTTATCCGGCGCGCCCGAGGTGTCCCCCCACTCTGATTCTTGCC
CircID chr20:45425648|45425834
ORF Type ORF3
Protein Length 55
Nucleotide Length 168
Protein Sequence MPYNVICLTCTVVAVCYGSFYNLLTRTFHIEEPRTGGLAKRLANLIRRARGVPPL
Nucleotide Sequence ATGCCCTACAACGTGATCTGCCTCACGTGCACTGTGGTGGCCGTGTGCTATGGCTCCTTCTACAATCTCCTCACCCGAACCTTCCACATCGAGGAGCCCCGCACAGGTGGCCTGGCCAAGCGGCTGGCCAACCTTATCCGGCGCGCCCGAGGTGTCCCCCCACTCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab