CircRNA Information

General Information
circRNA Basic Information
CircID chr20:45883155|45883287
Strand -
CircType exon
Host Gene ENSG00000168612.4;
Algorism CIRI2;
Sequence GGCCCGTGGAAAGGCTGCTCCTGACCTCCCTGCAGAGCACAATGTGCTCAGCCACAGCAGGCAACCTGAGAAAGTTGTATACACTCCTGAGCAACTGCATCCCTCCAGCCAAGCTGCCCGAGCTTCACTCACA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:45883155|45883287 hsa-miR-122-5p 0 0 1
chr20:45883155|45883287 hsa-miR-122-3p 0 0 1
chr20:45883155|45883287 hsa-miR-370-5p 0 0 1
chr20:45883155|45883287 hsa-miR-370-3p 0 0 1
chr20:45883155|45883287 hsa-miR-381-5p 0 0 1
chr20:45883155|45883287 hsa-miR-381-3p 0 0 1
chr20:45883155|45883287 hsa-miR-647 0 0 1
chr20:45883155|45883287 hsa-miR-300 0 0 1
chr20:45883155|45883287 hsa-miR-1178-5p 0 0 1
chr20:45883155|45883287 hsa-miR-1178-3p 0 0 1
chr20:45883155|45883287 hsa-miR-1205 0 0 1
chr20:45883155|45883287 hsa-miR-1266-5p 0 0 1
chr20:45883155|45883287 hsa-miR-1266-3p 0 0 1
chr20:45883155|45883287 hsa-miR-1321 0 0 1
chr20:45883155|45883287 hsa-miR-127-5p 0 0 1
chr20:45883155|45883287 hsa-miR-1184 0 0 1
chr20:45883155|45883287 hsa-miR-218 0 0 1
chr20:45883155|45883287 hsa-miR-608 1 0 0
chr20:45883155|45883287 hsa-miR-650 1 0 0
chr20:45883155|45883287 hsa-miR-1183 1 0 0
chr20:45883155|45883287 hsa-miR-1538 1 0 0
chr20:45883155|45883287 hsa-miR-3147 1 0 0
chr20:45883155|45883287 hsa-miR-4270 1 0 0
chr20:45883155|45883287 hsa-miR-3652 1 0 0
chr20:45883155|45883287 hsa-miR-3937 1 0 0
chr20:45883155|45883287 hsa-miR-4430 1 0 0
chr20:45883155|45883287 hsa-miR-3135b 1 0 0
chr20:45883155|45883287 hsa-miR-4518 1 0 0
chr20:45883155|45883287 hsa-miR-4538 1 0 0
chr20:45883155|45883287 hsa-miR-4656 1 0 0
chr20:45883155|45883287 hsa-miR-4706 1 0 0
chr20:45883155|45883287 hsa-miR-4734 1 0 0
chr20:45883155|45883287 hsa-miR-4739 1 0 0
chr20:45883155|45883287 hsa-miR-5787 1 0 0
chr20:45883155|45883287 hsa-miR-6127 1 0 0
chr20:45883155|45883287 hsa-miR-6860 1 0 0
chr20:45883155|45883287 hsa-miR-12115 1 0 0
chr20:45883155|45883287 hsa-miR-4433a-3p 1 0 0
chr20:45883155|45883287 hsa-miR-6825-5p 1 0 0
chr20:45883155|45883287 hsa-miR-6854-5p 1 0 0
chr20:45883155|45883287 hsa-miR-3622a-5p 1 0 0
chr20:45883155|45883287 hsa-miR-6089 1 0 0
chr20:45883155|45883287 hsa-miR-3192-5p 1 0 0
chr20:45883155|45883287 hsa-miR-6757-5p 1 0 0
chr20:45883155|45883287 hsa-miR-4722-5p 1 0 0
chr20:45883155|45883287 hsa-miR-1301-3p 1 0 0
chr20:45883155|45883287 hsa-miR-6721-5p 1 0 0
chr20:45883155|45883287 hsa-miR-6772-5p 1 0 0
chr20:45883155|45883287 hsa-miR-2467-5p 1 0 0
chr20:45883155|45883287 hsa-miR-6798-5p 1 0 0
chr20:45883155|45883287 hsa-miR-486-3p 1 0 0
chr20:45883155|45883287 hsa-miR-6782-5p 1 0 0
chr20:45883155|45883287 hsa-miR-3934-3p 1 0 0
chr20:45883155|45883287 hsa-miR-4640-5p 1 0 0
chr20:45883155|45883287 hsa-miR-885-3p 1 0 0
chr20:45883155|45883287 hsa-miR-6771-5p 1 0 0
chr20:45883155|45883287 hsa-miR-149-3p 1 0 0
chr20:45883155|45883287 hsa-miR-6801-5p 1 0 0
chr20:45883155|45883287 hsa-miR-4750-5p 1 0 0
chr20:45883155|45883287 hsa-miR-1207-5p 1 0 0
chr20:45883155|45883287 hsa-miR-1273h-5p 1 0 0
chr20:45883155|45883287 hsa-miR-5001-5p 1 0 0
chr20:45883155|45883287 hsa-miR-6851-5p 1 0 0
chr20:45883155|45883287 hsa-miR-1249-5p 1 0 0
chr20:45883155|45883287 hsa-miR-6722-3p 1 0 0
chr20:45883155|45883287 hsa-miR-6774-5p 1 0 0
chr20:45883155|45883287 hsa-miR-6797-5p 1 0 0
chr20:45883155|45883287 hsa-miR-6875-5p 1 0 0
chr20:45883155|45883287 hsa-miR-7111-5p 1 0 0
chr20:45883155|45883287 hsa-miR-4728-5p 1 0 0
chr20:45883155|45883287 hsa-miR-6836-5p 1 0 0
chr20:45883155|45883287 hsa-miR-1909-3p 1 0 0
chr20:45883155|45883287 hsa-miR-328-5p 1 0 0
chr20:45883155|45883287 hsa-miR-4632-5p 1 0 0
chr20:45883155|45883287 hsa-miR-4749-5p 1 0 0
chr20:45883155|45883287 hsa-miR-6738-5p 1 0 0
chr20:45883155|45883287 hsa-miR-6777-5p 1 0 0
chr20:45883155|45883287 hsa-miR-6795-5p 1 0 0
chr20:45883155|45883287 hsa-miR-3187-5p 1 0 0
chr20:45883155|45883287 hsa-miR-939-5p 1 0 0
chr20:45883155|45883287 hsa-miR-4758-5p 1 0 0
chr20:45883155|45883287 hsa-miR-5008-3p 1 0 0
chr20:45883155|45883287 hsa-miR-6736-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:45883155|45883287
ORF Type ORF1
Protein Length 39
Nucleotide Length 117
Protein Sequence MLLTSLQSTMCSATAGNLRKLYTLLSNCIPPAKLPELHS
Nucleotide Sequence CTGCTCCTGACCTCCCTGCAGAGCACAATGTGCTCAGCCACAGCAGGCAACCTGAGAAAGTTGTATACACTCCTGAGCAACTGCATCCCTCCAGCCAAGCTGCCCGAGCTTCACTCA
CircID chr20:45883155|45883287
ORF Type ORF2
Protein Length 37
Nucleotide Length 111
Protein Sequence MAGGMQLLRSVYNFLRLPAVAEHIVLCREVRSSLSTG
Nucleotide Sequence TTGGCTGGAGGGATGCAGTTGCTCAGGAGTGTATACAACTTTCTCAGGTTGCCTGCTGTGGCTGAGCACATTGTGCTCTGCAGGGAGGTCAGGAGCAGCCTTTCCACGGGC
CircID chr20:45883155|45883287
ORF Type ORF3
Protein Length 36
Nucleotide Length 108
Protein Sequence MEGCSCSGVYTTFSGCLLWLSTLCSAGRSGAAFPRA
Nucleotide Sequence CTGGAGGGATGCAGTTGCTCAGGAGTGTATACAACTTTCTCAGGTTGCCTGCTGTGGCTGAGCACATTGTGCTCTGCAGGGAGGTCAGGAGCAGCCTTTCCACGGGCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab