CircRNA Information

General Information
circRNA Basic Information
CircID chr20:48625663|48625764
Strand +
CircType exon
Host Gene ENSG00000124126.12;
Algorism CIRI2;
Sequence CTGCCCAGCGTCCTCCCTGCCTCCTTCCGGGACAAGCCTGGCCACCCTCGCTGTGATGACGAGCTGGCTGATTGGCCCTGGGCCGGCCCATTCTTCACACGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:48625663|48625764 hsa-miR-612 0 0 1
chr20:48625663|48625764 hsa-miR-650 0 0 1
chr20:48625663|48625764 hsa-miR-940 0 1 1
chr20:48625663|48625764 hsa-miR-1321 0 0 1
chr20:48625663|48625764 hsa-miR-1827 0 0 1
chr20:48625663|48625764 hsa-miR-1207-5p 0 1 1
chr20:48625663|48625764 hsa-miR-1285 0 0 1
chr20:48625663|48625764 hsa-miR-658 1 0 0
chr20:48625663|48625764 hsa-miR-762 1 1 0
chr20:48625663|48625764 hsa-miR-1202 1 0 0
chr20:48625663|48625764 hsa-miR-663b 1 0 0
chr20:48625663|48625764 hsa-miR-3196 1 0 0
chr20:48625663|48625764 hsa-miR-4281 1 0 0
chr20:48625663|48625764 hsa-miR-4441 0 1 0
chr20:48625663|48625764 hsa-miR-4449 1 1 0
chr20:48625663|48625764 hsa-miR-4498 1 0 0
chr20:48625663|48625764 hsa-miR-4533 1 1 0
chr20:48625663|48625764 hsa-miR-4688 1 0 0
chr20:48625663|48625764 hsa-miR-4706 0 1 0
chr20:48625663|48625764 hsa-miR-4739 1 1 0
chr20:48625663|48625764 hsa-miR-5090 1 0 0
chr20:48625663|48625764 hsa-miR-6075 0 1 0
chr20:48625663|48625764 hsa-miR-6084 1 0 0
chr20:48625663|48625764 hsa-miR-6086 1 0 0
chr20:48625663|48625764 hsa-miR-6125 0 1 0
chr20:48625663|48625764 hsa-miR-6127 1 0 0
chr20:48625663|48625764 hsa-miR-6133 1 1 0
chr20:48625663|48625764 hsa-miR-7150 1 0 0
chr20:48625663|48625764 hsa-miR-8072 1 0 0
chr20:48625663|48625764 hsa-miR-8073 1 0 0
chr20:48625663|48625764 hsa-miR-12118 0 1 0
chr20:48625663|48625764 hsa-miR-3157-5p 0 1 0
chr20:48625663|48625764 hsa-miR-6765-5p 1 0 0
chr20:48625663|48625764 hsa-miR-7106-5p 1 0 0
chr20:48625663|48625764 hsa-miR-6894-5p 1 0 0
chr20:48625663|48625764 hsa-miR-6799-5p 1 0 0
chr20:48625663|48625764 hsa-miR-6804-5p 0 1 0
chr20:48625663|48625764 hsa-miR-6089 1 0 0
chr20:48625663|48625764 hsa-miR-4695-5p 1 1 0
chr20:48625663|48625764 hsa-miR-4755-3p 0 1 0
chr20:48625663|48625764 hsa-miR-6732-5p 1 0 0
chr20:48625663|48625764 hsa-miR-6858-3p 0 1 0
chr20:48625663|48625764 hsa-miR-4640-5p 1 1 0
chr20:48625663|48625764 hsa-miR-1908-5p 0 1 0
chr20:48625663|48625764 hsa-miR-4787-5p 1 0 0
chr20:48625663|48625764 hsa-miR-149-3p 1 0 0
chr20:48625663|48625764 hsa-miR-6781-5p 0 1 0
chr20:48625663|48625764 hsa-miR-6895-5p 0 1 0
chr20:48625663|48625764 hsa-miR-10400-5p 1 0 0
chr20:48625663|48625764 hsa-miR-1233-5p 1 0 0
chr20:48625663|48625764 hsa-miR-4763-3p 1 1 0
chr20:48625663|48625764 hsa-miR-6778-5p 1 0 0
chr20:48625663|48625764 hsa-miR-6865-5p 1 0 0
chr20:48625663|48625764 hsa-miR-6893-5p 1 0 0
chr20:48625663|48625764 hsa-miR-5001-5p 1 0 0
chr20:48625663|48625764 hsa-miR-6737-5p 1 0 0
chr20:48625663|48625764 hsa-miR-6743-5p 1 0 0
chr20:48625663|48625764 hsa-miR-6752-5p 1 0 0
chr20:48625663|48625764 hsa-miR-6754-5p 1 1 0
chr20:48625663|48625764 hsa-miR-6756-5p 1 0 0
chr20:48625663|48625764 hsa-miR-1249-5p 1 0 0
chr20:48625663|48625764 hsa-miR-6808-5p 1 1 0
chr20:48625663|48625764 hsa-miR-6879-5p 1 0 0
chr20:48625663|48625764 hsa-miR-7111-5p 1 0 0
chr20:48625663|48625764 hsa-miR-1915-3p 0 1 0
chr20:48625663|48625764 hsa-miR-3620-5p 1 0 0
chr20:48625663|48625764 hsa-miR-4685-5p 1 0 0
chr20:48625663|48625764 hsa-miR-4745-5p 1 0 0
chr20:48625663|48625764 hsa-miR-6729-5p 1 0 0
chr20:48625663|48625764 hsa-miR-6846-5p 1 0 0
chr20:48625663|48625764 hsa-miR-6848-5p 1 0 0
chr20:48625663|48625764 hsa-miR-4758-5p 1 0 0
chr20:48625663|48625764 hsa-miR-3173-3p 0 1 0
chr20:48625663|48625764 hsa-miR-6876-5p 0 1 0
chr20:48625663|48625764 hsa-miR-6891-5p 1 1 0
chr20:48625663|48625764 hsa-miR-6837-5p 0 1 0
chr20:48625663|48625764 hsa-miR-4756-5p 0 1 0
chr20:48625663|48625764 hsa-miR-6764-5p 0 1 0
chr20:48625663|48625764 hsa-miR-10522-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:48625663|48625764
ORF Type ORF1
Protein Length 34
Nucleotide Length 102
Protein Sequence LPSVLPASFRDKPGHPRCDDELADWPWAGPFFTR
Nucleotide Sequence CTGCCCAGCGTCCTCCCTGCCTCCTTCCGGGACAAGCCTGGCCACCCTCGCTGTGATGACGAGCTGGCTGATTGGCCCTGGGCCGGCCCATTCTTCACACGC
CircID chr20:48625663|48625764
ORF Type ORF2
Protein Length 28
Nucleotide Length 84
Protein Sequence MPPSGTSLATLAVMTSWLIGPGPAHSSH
Nucleotide Sequence CTGCCTCCTTCCGGGACAAGCCTGGCCACCCTCGCTGTGATGACGAGCTGGCTGATTGGCCCTGGGCCGGCCCATTCTTCACAC
CircID chr20:48625663|48625764
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MGRPRANQPARHHSEGGQACPGRRQGGRWA
Nucleotide Sequence ATGGGCCGGCCCAGGGCCAATCAGCCAGCTCGTCATCACAGCGAGGGTGGCCAGGCTTGTCCCGGAAGGAGGCAGGGAGGACGCTGGGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab