CircRNA Information

General Information
circRNA Basic Information
CircID chr20:48649317|48649576
Strand -
CircType exon
Host Gene ENSG00000124126.12;
Algorism CIRI2;
Sequence ATATTGCTTCATCTCCTTCAGGGCCACATCCAGCTTGGTGAAGAGCTGCAGGTAGGCATCCTGGATCTCACGGTCCTCCTGCTTGAGTAGGAAGCTGAGGCCCCGGTCTTCCTGACCAAGGGTCCCACTGGCTGGCCCGAAGCTGCCATCATGGAGACCCTGGCCTTGGGGATCACCCTCTGCAGCAGGCAAGCACTTCCAGGAGGGAGCAGCCATGGTGGTGATGCAGTGCTGGGTGTACGACATGGGGTTCAGGTGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:48649317|48649576 hsa-miR-197-5p 0 0 1
chr20:48649317|48649576 hsa-miR-197-3p 0 0 1
chr20:48649317|48649576 hsa-miR-217-5p 0 0 1
chr20:48649317|48649576 hsa-miR-217-3p 0 0 1
chr20:48649317|48649576 hsa-miR-143-5p 0 0 1
chr20:48649317|48649576 hsa-miR-143-3p 0 0 1
chr20:48649317|48649576 hsa-miR-136-5p 0 0 1
chr20:48649317|48649576 hsa-miR-136-3p 0 0 1
chr20:48649317|48649576 hsa-miR-302a-5p 0 0 1
chr20:48649317|48649576 hsa-miR-302a-3p 0 0 1
chr20:48649317|48649576 hsa-miR-302b-5p 0 0 1
chr20:48649317|48649576 hsa-miR-302b-3p 0 0 1
chr20:48649317|48649576 hsa-miR-302c-5p 0 0 1
chr20:48649317|48649576 hsa-miR-302c-3p 0 0 1
chr20:48649317|48649576 hsa-miR-302d-5p 0 0 1
chr20:48649317|48649576 hsa-miR-302d-3p 0 0 1
chr20:48649317|48649576 hsa-miR-370-5p 0 0 1
chr20:48649317|48649576 hsa-miR-370-3p 0 0 1
chr20:48649317|48649576 hsa-miR-372-5p 0 0 1
chr20:48649317|48649576 hsa-miR-372-3p 0 0 1
chr20:48649317|48649576 hsa-miR-373-5p 0 0 1
chr20:48649317|48649576 hsa-miR-373-3p 0 0 1
chr20:48649317|48649576 hsa-miR-328-5p 0 0 1
chr20:48649317|48649576 hsa-miR-328-3p 0 0 1
chr20:48649317|48649576 hsa-miR-412-5p 0 0 1
chr20:48649317|48649576 hsa-miR-412-3p 0 0 1
chr20:48649317|48649576 hsa-miR-520e-5p 0 0 1
chr20:48649317|48649576 hsa-miR-520e-3p 0 0 1
chr20:48649317|48649576 hsa-miR-520f-5p 0 0 1
chr20:48649317|48649576 hsa-miR-520f-3p 0 0 1
chr20:48649317|48649576 hsa-miR-520b-5p 0 0 1
chr20:48649317|48649576 hsa-miR-520b-3p 0 0 1
chr20:48649317|48649576 hsa-miR-575 0 1 1
chr20:48649317|48649576 hsa-miR-604 0 0 1
chr20:48649317|48649576 hsa-miR-636 0 0 1
chr20:48649317|48649576 hsa-miR-647 0 1 1
chr20:48649317|48649576 hsa-miR-1301-5p 0 0 1
chr20:48649317|48649576 hsa-miR-1301-3p 0 0 1
chr20:48649317|48649576 hsa-miR-888-5p 0 0 1
chr20:48649317|48649576 hsa-miR-888-3p 0 0 1
chr20:48649317|48649576 hsa-miR-665 0 0 1
chr20:48649317|48649576 hsa-miR-873-5p 0 0 1
chr20:48649317|48649576 hsa-miR-873-3p 0 0 1
chr20:48649317|48649576 hsa-miR-1182 0 0 1
chr20:48649317|48649576 hsa-miR-663b 0 0 1
chr20:48649317|48649576 hsa-miR-1287-5p 0 0 1
chr20:48649317|48649576 hsa-miR-1287-3p 0 0 1
chr20:48649317|48649576 hsa-miR-1291 0 1 1
chr20:48649317|48649576 hsa-miR-302e 0 1 1
chr20:48649317|48649576 hsa-miR-1252-5p 0 0 1
chr20:48649317|48649576 hsa-miR-1252-3p 0 0 1
chr20:48649317|48649576 hsa-miR-885-3p 0 0 1
chr20:48649317|48649576 hsa-miR-1184 0 0 1
chr20:48649317|48649576 hsa-miR-520d-3p 0 0 1
chr20:48649317|48649576 hsa-miR-520a-3p 0 0 1
chr20:48649317|48649576 hsa-miR-520c-3p 0 1 1
chr20:48649317|48649576 hsa-miR-516a-3p 0 1 1
chr20:48649317|48649576 hsa-miR-220b 0 0 1
chr20:48649317|48649576 hsa-miR-7 0 0 1
chr20:48649317|48649576 hsa-miR-640 1 1 0
chr20:48649317|48649576 hsa-miR-1202 1 1 0
chr20:48649317|48649576 hsa-miR-1470 1 0 0
chr20:48649317|48649576 hsa-miR-1913 1 0 0
chr20:48649317|48649576 hsa-miR-4469 0 1 0
chr20:48649317|48649576 hsa-miR-4751 0 1 0
chr20:48649317|48649576 hsa-miR-6078 1 0 0
chr20:48649317|48649576 hsa-miR-6088 0 1 0
chr20:48649317|48649576 hsa-miR-6165 0 1 0
chr20:48649317|48649576 hsa-miR-12113 0 1 0
chr20:48649317|48649576 hsa-miR-7-5p 0 1 0
chr20:48649317|48649576 hsa-miR-6747-3p 0 1 0
chr20:48649317|48649576 hsa-miR-6804-5p 0 1 0
chr20:48649317|48649576 hsa-miR-4722-5p 1 1 0
chr20:48649317|48649576 hsa-miR-6762-3p 1 1 0
chr20:48649317|48649576 hsa-miR-1915-5p 1 0 0
chr20:48649317|48649576 hsa-miR-7108-5p 0 1 0
chr20:48649317|48649576 hsa-miR-6765-3p 1 0 0
chr20:48649317|48649576 hsa-miR-3194-5p 0 1 0
chr20:48649317|48649576 hsa-miR-6888-5p 0 1 0
chr20:48649317|48649576 hsa-miR-6882-3p 1 0 0
chr20:48649317|48649576 hsa-miR-6788-3p 1 0 0
chr20:48649317|48649576 hsa-miR-345-3p 0 1 0
chr20:48649317|48649576 hsa-miR-6784-5p 0 1 0
chr20:48649317|48649576 hsa-miR-4640-5p 1 0 0
chr20:48649317|48649576 hsa-miR-4764-5p 0 1 0
chr20:48649317|48649576 hsa-miR-619-3p 1 1 0
chr20:48649317|48649576 hsa-miR-3690 1 0 0
chr20:48649317|48649576 hsa-miR-3158-5p 0 1 0
chr20:48649317|48649576 hsa-miR-194-3p 0 1 0
chr20:48649317|48649576 hsa-miR-3922-5p 0 1 0
chr20:48649317|48649576 hsa-miR-660-3p 0 1 0
chr20:48649317|48649576 hsa-miR-7112-3p 0 1 0
chr20:48649317|48649576 hsa-miR-383-3p 0 1 0
chr20:48649317|48649576 hsa-miR-6859-3p 1 0 0
chr20:48649317|48649576 hsa-miR-4485-5p 1 0 0
chr20:48649317|48649576 hsa-miR-6756-5p 1 0 0
chr20:48649317|48649576 hsa-miR-6842-5p 1 1 0
chr20:48649317|48649576 hsa-miR-3127-3p 1 0 0
chr20:48649317|48649576 hsa-miR-1909-3p 1 0 0
chr20:48649317|48649576 hsa-miR-3622a-3p 1 1 0
chr20:48649317|48649576 hsa-miR-6511b-3p 1 0 0
chr20:48649317|48649576 hsa-miR-4676-5p 0 1 0
chr20:48649317|48649576 hsa-miR-1234-3p 1 0 0
chr20:48649317|48649576 hsa-miR-3622b-3p 1 1 0
chr20:48649317|48649576 hsa-miR-10524-5p 0 1 0
chr20:48649317|48649576 hsa-miR-6807-3p 0 1 0
chr20:48649317|48649576 hsa-miR-7157-5p 0 1 0
chr20:48649317|48649576 hsa-miR-516b-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr20:48649317|48649576
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MLHLLQGHIQLGEELQVGILDLTVLLLE
Nucleotide Sequence TTGCTTCATCTCCTTCAGGGCCACATCCAGCTTGGTGAAGAGCTGCAGGTAGGCATCCTGGATCTCACGGTCCTCCTGCTTGAGTAG
CircID chr20:48649317|48649576
ORF Type ORF2
Protein Length 49
Nucleotide Length 147
Protein Sequence MTKGPTGWPEAAIMETLALGITLCSRQALPGGSSHGGDAVLGVRHGVQV
Nucleotide Sequence CTGACCAAGGGTCCCACTGGCTGGCCCGAAGCTGCCATCATGGAGACCCTGGCCTTGGGGATCACCCTCTGCAGCAGGCAAGCACTTCCAGGAGGGAGCAGCCATGGTGGTGATGCAGTGCTGGGTGTACGACATGGGGTTCAGGTG
CircID chr20:48649317|48649576
ORF Type ORF3
Protein Length 44
Nucleotide Length 132
Protein Sequence MAGPKLPSWRPWPWGSPSAAGKHFQEGAAMVVMQCWVYDMGFRW
Nucleotide Sequence CTGGCTGGCCCGAAGCTGCCATCATGGAGACCCTGGCCTTGGGGATCACCCTCTGCAGCAGGCAAGCACTTCCAGGAGGGAGCAGCCATGGTGGTGATGCAGTGCTGGGTGTACGACATGGGGTTCAGGTGG
CircID chr20:48649317|48649576
ORF Type ORF4
Protein Length 30
Nucleotide Length 93
Protein Sequence MARSCHHGDPGLGDHPLQQASTSRREQPWW
Nucleotide Sequence CTGGCCCGAAGCTGCCATCATGGAGACCCTGGCCTTGGGGATCACCCTCTGCAGCAGGCAAGCACTTCCAGGAGGGAGCAGCCATGGTGGTGA
CircID chr20:48649317|48649576
ORF Type ORF5
Protein Length 64
Nucleotide Length 195
Protein Sequence MLPPGSACLLQRVIPKARVSMMAASGQPVGPLVRKTGASASYSSRRTVRSRMPTCSSSPSWMWP
Nucleotide Sequence CTGCTCCCTCCTGGAAGTGCTTGCCTGCTGCAGAGGGTGATCCCCAAGGCCAGGGTCTCCATGATGGCAGCTTCGGGCCAGCCAGTGGGACCCTTGGTCAGGAAGACCGGGGCCTCAGCTTCCTACTCAAGCAGGAGGACCGTGAGATCCAGGATGCCTACCTGCAGCTCTTCACCAAGCTGGATGTGGCCCTGA
CircID chr20:48649317|48649576
ORF Type ORF6
Protein Length 85
Nucleotide Length 255
Protein Sequence MNPMSYTQHCITTMAAPSWKCLPAAEGDPQGQGLHDGSFGPASGTLGQEDRGLSFLLKQEDREIQDAYLQLFTKLDVALKEMKQY
Nucleotide Sequence CTGAACCCCATGTCGTACACCCAGCACTGCATCACCACCATGGCTGCTCCCTCCTGGAAGTGCTTGCCTGCTGCAGAGGGTGATCCCCAAGGCCAGGGTCTCCATGATGGCAGCTTCGGGCCAGCCAGTGGGACCCTTGGTCAGGAAGACCGGGGCCTCAGCTTCCTACTCAAGCAGGAGGACCGTGAGATCCAGGATGCCTACCTGCAGCTCTTCACCAAGCTGGATGTGGCCCTGAAGGAGATGAAGCAATAT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab