CircNet

General Information

circRNA Basic Information

CircID	chr20:49013564\|49028668
Strand	+
CircType	exon
Host Gene	ENSG00000124198.8;
Algorism	find_circ;CIRI2;DCC;
Sequence	GTGCTACAAGAATACACAAGTGATGACATGAATGTAGCTCCTGGTGACAGAGTCTGGGTCCGAGGCTGGTTCCCCATCTTATTCGAACTCTCCTGCATCATTAATAGATGCAAGTTAGATGTACGAACAAGGTTTTAAGGGCAAGTCTAAACCCAATCTTCTAAAACAAGAAACCAGCAGCCTGGCCTGTTGTTTGAGGATCCTGTTTCGAATGTATGTTGATGAGAACCGCAGGGATTCCTGGGAAGAAATACAGCAGAGACTTTTAAC

circRNA Expression in different cancers

circRNA-miRNA-gene regulatory network

Target miRNAs

CircID	miRNA	PITA	miRanda	targetScan
chr20:49013564\|49028668	hsa-miR-29b-1-5p	0	1	1

Target Genes

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Target miRNA Expression in different cancers

circRNA Open Reading Frame (ORF)

CircID	chr20:49013564\|49028668
ORF Type	ORF1
Protein Length	50
Nucleotide Length	150
Protein Sequence	MYEQGFKGKSKPNLLKQETSSLACCLRILFRMYVDENRRDSWEEIQQRLL
Nucleotide Sequence	ATGTACGAACAAGGTTTTAAGGGCAAGTCTAAACCCAATCTTCTAAAACAAGAAACCAGCAGCCTGGCCTGTTGTTTGAGGATCCTGTTTCGAATGTATGTTGATGAGAACCGCAGGGATTCCTGGGAAGAAATACAGCAGAGACTTTTA

CircID	chr20:49013564\|49028668
ORF Type	ORF2
Protein Length	37
Nucleotide Length	111
Protein Sequence	MNVAPGDRVWVRGWFPILFELSCIINRCKLDVRTRF*
Nucleotide Sequence	ATGAATGTAGCTCCTGGTGACAGAGTCTGGGTCCGAGGCTGGTTCCCCATCTTATTCGAACTCTCCTGCATCATTAATAGATGCAAGTTAGATGTACGAACAAGGTTTTAA

CircID	chr20:49013564\|49028668
ORF Type	ORF3
Protein Length	33
Nucleotide Length	99
Protein Sequence	MMQESSNKMGNQPRTQTLSPGATFMSSLVYSCS
Nucleotide Sequence	ATGATGCAGGAGAGTTCGAATAAGATGGGGAACCAGCCTCGGACCCAGACTCTGTCACCAGGAGCTACATTCATGTCATCACTTGTGTATTCTTGTAGC

RNA Binding Protein (RBP) of circRNA

CircID	RBP	Number of Upstream Sites	Number of Downstream Sites	Number of Circ Exons Sites
chr20:49013564\|49028668	ELAVL1	3	0	0
chr20:49013564\|49028668	SF3B4	2	0	0
chr20:49013564\|49028668	CELF2	2	0	0
chr20:49013564\|49028668	PRPF8	0	1	1
chr20:49013564\|49028668	FMR1	1	0	1
chr20:49013564\|49028668	CPSF6	0	0	1
chr20:49013564\|49028668	TROVE2	0	0	1
chr20:49013564\|49028668	XPO5	0	1	0
chr20:49013564\|49028668	NOP58	0	1	2
chr20:49013564\|49028668	U2AF2	2	4	0
chr20:49013564\|49028668	DDX54	0	1	9
chr20:49013564\|49028668	RBM10	0	2	0
chr20:49013564\|49028668	SF3A3	2	0	0
chr20:49013564\|49028668	PTBP1	1	3	0
chr20:49013564\|49028668	HNRNPC	10	0	1
chr20:49013564\|49028668	HNRNPD	0	1	0
chr20:49013564\|49028668	TRA2A	0	0	1
chr20:49013564\|49028668	DHX9	0	1	0
chr20:49013564\|49028668	ACIN1	0	0	1
chr20:49013564\|49028668	SMNDC1	1	0	0
chr20:49013564\|49028668	HNRNPA1	1	0	0
chr20:49013564\|49028668	LIN28B	2	1	1
chr20:49013564\|49028668	FXR2	0	0	1
chr20:49013564\|49028668	IGF2BP2	0	0	1
chr20:49013564\|49028668	FTO	1	0	0
chr20:49013564\|49028668	RBM47	0	0	1
chr20:49013564\|49028668	CSTF2T	1	0	2
chr20:49013564\|49028668	CSTF2	3	3	0
chr20:49013564\|49028668	EIF4A3	2	3	5
chr20:49013564\|49028668	FBL	1	0	2

CircRNA Information