CircRNA Information

General Information
circRNA Basic Information
CircID chr20:49074831|49075520
Strand +
CircType exon
Host Gene ENSG00000124207.15;
Algorism CIRI2;
Sequence CTTCTGTGTTTGGGCTTTTGATGCCAAAGATGTCACTAGGTAGATGGCTGCATCTTTGTGTTTCCAGTTGACAGATGGATTTTTTGCGTATTCCTGCAGCATGGAATTAACATAACCAGAGAAGATTCCTGTCACAGGTCCCTCAAAAAACTTGCATAATCCTCGTACCAGATCACAAGCAGCCCTGCGTCTAGTATCAATATCAGATCCTTCCAAATCTCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:49074831|49075520 hsa-miR-96-5p 0 0 1
chr20:49074831|49075520 hsa-miR-96-3p 0 0 1
chr20:49074831|49075520 hsa-miR-182-5p 0 0 1
chr20:49074831|49075520 hsa-miR-182-3p 0 0 1
chr20:49074831|49075520 hsa-miR-326 0 0 1
chr20:49074831|49075520 hsa-miR-489-5p 0 0 1
chr20:49074831|49075520 hsa-miR-489-3p 0 0 1
chr20:49074831|49075520 hsa-miR-492 0 1 1
chr20:49074831|49075520 hsa-miR-505-5p 0 0 1
chr20:49074831|49075520 hsa-miR-505-3p 0 0 1
chr20:49074831|49075520 hsa-miR-569 0 0 1
chr20:49074831|49075520 hsa-miR-1271-5p 0 0 1
chr20:49074831|49075520 hsa-miR-1271-3p 0 0 1
chr20:49074831|49075520 hsa-miR-942-5p 0 0 1
chr20:49074831|49075520 hsa-miR-942-3p 0 0 1
chr20:49074831|49075520 hsa-miR-1205 0 0 1
chr20:49074831|49075520 hsa-miR-1286 0 0 1
chr20:49074831|49075520 hsa-miR-1304-5p 0 0 1
chr20:49074831|49075520 hsa-miR-1304-3p 0 0 1
chr20:49074831|49075520 hsa-miR-129-5p 0 0 1
chr20:49074831|49075520 hsa-miR-28-3p 0 0 1
chr20:49074831|49075520 hsa-miR-875-3p 0 1 1
chr20:49074831|49075520 hsa-miR-330-5p 0 0 1
chr20:49074831|49075520 hsa-miR-491-3p 0 0 1
chr20:49074831|49075520 hsa-miR-542-3p 0 0 1
chr20:49074831|49075520 hsa-miR-548c-3p 0 0 1
chr20:49074831|49075520 hsa-miR-9 0 0 1
chr20:49074831|49075520 hsa-miR-762 1 0 0
chr20:49074831|49075520 hsa-miR-3131 1 0 0
chr20:49074831|49075520 hsa-miR-4464 1 0 0
chr20:49074831|49075520 hsa-miR-4476 1 0 0
chr20:49074831|49075520 hsa-miR-3689c 1 1 0
chr20:49074831|49075520 hsa-miR-4533 1 0 0
chr20:49074831|49075520 hsa-miR-4654 1 0 0
chr20:49074831|49075520 hsa-miR-4657 1 0 0
chr20:49074831|49075520 hsa-miR-4737 1 0 0
chr20:49074831|49075520 hsa-miR-4739 1 0 0
chr20:49074831|49075520 hsa-miR-4741 1 0 0
chr20:49074831|49075520 hsa-miR-4748 1 1 0
chr20:49074831|49075520 hsa-miR-6086 1 0 0
chr20:49074831|49075520 hsa-miR-6132 1 1 0
chr20:49074831|49075520 hsa-miR-8062 1 0 0
chr20:49074831|49075520 hsa-miR-150-3p 1 0 0
chr20:49074831|49075520 hsa-miR-7106-5p 1 0 0
chr20:49074831|49075520 hsa-miR-6894-5p 1 0 0
chr20:49074831|49075520 hsa-miR-4687-3p 1 0 0
chr20:49074831|49075520 hsa-miR-1301-3p 1 0 0
chr20:49074831|49075520 hsa-miR-6762-3p 0 1 0
chr20:49074831|49075520 hsa-miR-185-3p 1 0 0
chr20:49074831|49075520 hsa-miR-6829-5p 1 0 0
chr20:49074831|49075520 hsa-miR-3190-3p 1 0 0
chr20:49074831|49075520 hsa-miR-3126-5p 0 1 0
chr20:49074831|49075520 hsa-miR-1226-5p 1 0 0
chr20:49074831|49075520 hsa-miR-3127-5p 1 0 0
chr20:49074831|49075520 hsa-miR-6771-5p 1 0 0
chr20:49074831|49075520 hsa-miR-6834-5p 0 1 0
chr20:49074831|49075520 hsa-miR-4446-3p 1 1 0
chr20:49074831|49075520 hsa-miR-149-3p 1 0 0
chr20:49074831|49075520 hsa-miR-4679 0 1 0
chr20:49074831|49075520 hsa-miR-1233-5p 1 0 0
chr20:49074831|49075520 hsa-miR-1273h-5p 1 0 0
chr20:49074831|49075520 hsa-miR-3689b-3p 1 1 0
chr20:49074831|49075520 hsa-miR-6778-5p 1 0 0
chr20:49074831|49075520 hsa-miR-1249-5p 1 0 0
chr20:49074831|49075520 hsa-miR-6779-5p 1 0 0
chr20:49074831|49075520 hsa-miR-6780a-5p 1 0 0
chr20:49074831|49075520 hsa-miR-6797-5p 1 0 0
chr20:49074831|49075520 hsa-miR-6875-5p 1 1 0
chr20:49074831|49075520 hsa-miR-6836-5p 1 0 0
chr20:49074831|49075520 hsa-miR-3689a-3p 1 0 0
chr20:49074831|49075520 hsa-miR-4632-5p 1 0 0
chr20:49074831|49075520 hsa-miR-4685-5p 1 0 0
chr20:49074831|49075520 hsa-miR-6846-5p 1 0 0
chr20:49074831|49075520 hsa-miR-6887-5p 1 0 0
chr20:49074831|49075520 hsa-miR-939-5p 1 0 0
chr20:49074831|49075520 hsa-miR-3679-5p 1 0 0
chr20:49074831|49075520 hsa-miR-4747-5p 1 0 0
chr20:49074831|49075520 hsa-miR-3184-5p 1 0 0
chr20:49074831|49075520 hsa-miR-769-3p 1 0 0
chr20:49074831|49075520 hsa-miR-6529-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr20:49074831|49075520
ORF Type ORF1
Protein Length 72
Nucleotide Length 216
Protein Sequence MEGSDIDTRRRAACDLVRGLCKFFEGPVTGIFSGYVNSMLQEYAKNPSVNWKHKDAAIYLVTSLASKAQTQK
Nucleotide Sequence TTGGAAGGATCTGATATTGATACTAGACGCAGGGCTGCTTGTGATCTGGTACGAGGATTATGCAAGTTTTTTGAGGGACCTGTGACAGGAATCTTCTCTGGTTATGTTAATTCCATGCTGCAGGAATACGCAAAAAATCCATCTGTCAACTGGAAACACAAAGATGCAGCCATCTACCTAGTGACATCTTTGGCATCAAAAGCCCAAACACAGAAG
CircID chr20:49074831|49075520
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MVMLIPCCRNTQKIHLSTGNTKMQPST
Nucleotide Sequence CTGGTTATGTTAATTCCATGCTGCAGGAATACGCAAAAAATCCATCTGTCAACTGGAAACACAAAGATGCAGCCATCTACCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab