CircRNA Information

General Information
circRNA Basic Information
CircID chr20:49114565|49114771
Strand +
CircType exon
Host Gene ENSG00000124214.18;
Algorism CIRI2;
Sequence ACGGTGGGTAAAGGATGTGGGCAGCAGCAGGGAAGACAACAGAAACACAAGGAGGCGGCTGTGGCCGGGCTGGACTGTGCTGGGGTTTGTTGTGATGGCCACTCGGTGACCTGGCGGTCCCTACGCAATAGCAGCTGCCTGTGGGGAAGAAGGGCTGCCCAGCCAGCTGGTTCTCCCGGGACACCAGCAGATCCACACCCTGGGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:49114565|49114771 hsa-miR-370-5p 0 0 1
chr20:49114565|49114771 hsa-miR-370-3p 0 0 1
chr20:49114565|49114771 hsa-miR-511-5p 0 0 1
chr20:49114565|49114771 hsa-miR-511-3p 0 0 1
chr20:49114565|49114771 hsa-miR-495-5p 0 0 1
chr20:49114565|49114771 hsa-miR-495-3p 0 0 1
chr20:49114565|49114771 hsa-miR-581 0 0 1
chr20:49114565|49114771 hsa-miR-589-5p 0 0 1
chr20:49114565|49114771 hsa-miR-589-3p 0 0 1
chr20:49114565|49114771 hsa-miR-612 1 0 1
chr20:49114565|49114771 hsa-miR-1248 0 0 1
chr20:49114565|49114771 hsa-miR-1267 0 0 1
chr20:49114565|49114771 hsa-miR-1281 0 0 1
chr20:49114565|49114771 hsa-miR-501-5p 0 0 1
chr20:49114565|49114771 hsa-miR-1207-3p 0 0 1
chr20:49114565|49114771 hsa-miR-455-3p 0 0 1
chr20:49114565|49114771 hsa-miR-1274a 0 0 1
chr20:49114565|49114771 hsa-miR-1280 0 0 1
chr20:49114565|49114771 hsa-miR-138 0 0 1
chr20:49114565|49114771 hsa-miR-1285 0 0 1
chr20:49114565|49114771 hsa-miR-129-3p 0 0 1
chr20:49114565|49114771 hsa-miR-346 1 0 0
chr20:49114565|49114771 hsa-miR-638 1 0 0
chr20:49114565|49114771 hsa-miR-663a 1 0 0
chr20:49114565|49114771 hsa-miR-1538 1 0 0
chr20:49114565|49114771 hsa-miR-1913 1 0 0
chr20:49114565|49114771 hsa-miR-1976 1 0 0
chr20:49114565|49114771 hsa-miR-4284 1 0 0
chr20:49114565|49114771 hsa-miR-4449 1 0 0
chr20:49114565|49114771 hsa-miR-6071 1 0 0
chr20:49114565|49114771 hsa-miR-6084 1 0 0
chr20:49114565|49114771 hsa-miR-18a-3p 1 0 0
chr20:49114565|49114771 hsa-miR-15a-3p 1 0 0
chr20:49114565|49114771 hsa-miR-6836-3p 1 0 0
chr20:49114565|49114771 hsa-miR-6720-5p 1 0 0
chr20:49114565|49114771 hsa-miR-766-3p 1 0 0
chr20:49114565|49114771 hsa-miR-6854-5p 1 0 0
chr20:49114565|49114771 hsa-miR-3677-5p 1 0 0
chr20:49114565|49114771 hsa-miR-874-3p 1 0 0
chr20:49114565|49114771 hsa-miR-6849-3p 1 0 0
chr20:49114565|49114771 hsa-miR-6787-3p 1 0 0
chr20:49114565|49114771 hsa-miR-942-5p 1 0 0
chr20:49114565|49114771 hsa-miR-6728-3p 1 0 0
chr20:49114565|49114771 hsa-miR-6882-3p 1 0 0
chr20:49114565|49114771 hsa-miR-6772-3p 1 0 0
chr20:49114565|49114771 hsa-miR-4707-3p 1 0 0
chr20:49114565|49114771 hsa-miR-1908-3p 1 0 0
chr20:49114565|49114771 hsa-miR-4707-5p 1 0 0
chr20:49114565|49114771 hsa-miR-1910-5p 1 0 0
chr20:49114565|49114771 hsa-miR-5591-3p 1 0 0
chr20:49114565|49114771 hsa-miR-1178-3p 1 0 0
chr20:49114565|49114771 hsa-miR-767-3p 1 0 0
chr20:49114565|49114771 hsa-miR-4717-5p 1 0 0
chr20:49114565|49114771 hsa-miR-5089-3p 1 0 0
chr20:49114565|49114771 hsa-miR-744-3p 1 0 0
chr20:49114565|49114771 hsa-miR-1343-5p 1 0 0
chr20:49114565|49114771 hsa-miR-6743-5p 1 0 0
chr20:49114565|49114771 hsa-miR-6752-5p 1 0 0
chr20:49114565|49114771 hsa-miR-4697-5p 1 0 0
chr20:49114565|49114771 hsa-miR-6791-3p 1 0 0
chr20:49114565|49114771 hsa-miR-6893-3p 1 0 0
chr20:49114565|49114771 hsa-miR-6810-3p 1 0 0
chr20:49114565|49114771 hsa-miR-10392-3p 1 0 0
chr20:49114565|49114771 hsa-miR-129-2-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:49114565|49114771
ORF Type ORF1
Protein Length 46
Nucleotide Length 138
Protein Sequence MDCAGVCCDGHSVTWRSLRNSSCLWGRRAAQPAGSPGTPADPHPGH
Nucleotide Sequence CTGGACTGTGCTGGGGTTTGTTGTGATGGCCACTCGGTGACCTGGCGGTCCCTACGCAATAGCAGCTGCCTGTGGGGAAGAAGGGCTGCCCAGCCAGCTGGTTCTCCCGGGACACCAGCAGATCCACACCCTGGGCAC
CircID chr20:49114565|49114771
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MWAAAGKTTETQGGGCGRAGLCWGLL
Nucleotide Sequence ATGTGGGCAGCAGCAGGGAAGACAACAGAAACACAAGGAGGCGGCTGTGGCCGGGCTGGACTGTGCTGGGGTTTGTTGTGA
CircID chr20:49114565|49114771
ORF Type ORF3
Protein Length 44
Nucleotide Length 132
Protein Sequence MLLRRDRQVTEWPSQQTPAQSSPATAASLCFCCLPCCCPHPLPT
Nucleotide Sequence CTGCTATTGCGTAGGGACCGCCAGGTCACCGAGTGGCCATCACAACAAACCCCAGCACAGTCCAGCCCGGCCACAGCCGCCTCCTTGTGTTTCTGTTGTCTTCCCTGCTGCTGCCCACATCCTTTACCCACC
CircID chr20:49114565|49114771
ORF Type ORF4
Protein Length 63
Nucleotide Length 189
Protein Sequence MLVSRENQLAGQPFFPTGSCYCVGTARSPSGHHNKPQHSPARPQPPPCVSVVFPAAAHILYPP
Nucleotide Sequence CTGCTGGTGTCCCGGGAGAACCAGCTGGCTGGGCAGCCCTTCTTCCCCACAGGCAGCTGCTATTGCGTAGGGACCGCCAGGTCACCGAGTGGCCATCACAACAAACCCCAGCACAGTCCAGCCCGGCCACAGCCGCCTCCTTGTGTTTCTGTTGTCTTCCCTGCTGCTGCCCACATCCTTTACCCACCG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab