CircRNA Information

General Information
circRNA Basic Information
CircID chr20:49123105|49123208
Strand -
CircType exon
Host Gene ENSG00000124214.18;
Algorism CIRI2;
Sequence TCCCTGCGGCGCGGGAGGCCTCGCTCTGTGAGGAGCGTGTACTCTGGCTCCTTCTCCTTTTTTGCCTGCTGGATCTGGGCCAGTCGGCTAATCGGATTGATCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:49123105|49123208 hsa-miR-214-5p 0 0 1
chr20:49123105|49123208 hsa-miR-214-3p 0 0 1
chr20:49123105|49123208 hsa-miR-193b-5p 0 0 1
chr20:49123105|49123208 hsa-miR-193b-3p 0 0 1
chr20:49123105|49123208 hsa-miR-338-3p 0 0 1
chr20:49123105|49123208 hsa-miR-193a-3p 0 0 1
chr20:49123105|49123208 hsa-miR-4428 0 1 0
chr20:49123105|49123208 hsa-miR-4516 1 1 0
chr20:49123105|49123208 hsa-miR-4530 0 1 0
chr20:49123105|49123208 hsa-miR-6746-5p 1 0 0
chr20:49123105|49123208 hsa-miR-505-5p 0 1 0
chr20:49123105|49123208 hsa-miR-24-3p 1 1 0
chr20:49123105|49123208 hsa-miR-6806-5p 1 0 0
chr20:49123105|49123208 hsa-miR-6770-5p 0 1 0
chr20:49123105|49123208 hsa-miR-6760-5p 0 1 0
chr20:49123105|49123208 hsa-miR-4690-5p 0 1 0
chr20:49123105|49123208 hsa-miR-4725-3p 0 1 0
chr20:49123105|49123208 hsa-miR-6511b-5p 0 1 0
chr20:49123105|49123208 hsa-miR-3619-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:49123105|49123208
ORF Type ORF1
Protein Length 33
Nucleotide Length 99
Protein Sequence MRRGRPRSVRSVYSGSFSFFACWIWASRLIGLI
Nucleotide Sequence CTGCGGCGCGGGAGGCCTCGCTCTGTGAGGAGCGTGTACTCTGGCTCCTTCTCCTTTTTTGCCTGCTGGATCTGGGCCAGTCGGCTAATCGGATTGATC
CircID chr20:49123105|49123208
ORF Type ORF2
Protein Length 27
Nucleotide Length 81
Protein Sequence MAQIQQAKKEKEPEYTLLTERGLPRRR
Nucleotide Sequence CTGGCCCAGATCCAGCAGGCAAAAAAGGAGAAGGAGCCAGAGTACACGCTCCTCACAGAGCGAGGCCTCCCGCGCCGCAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab