CircRNA Information

General Information
circRNA Basic Information
CircID chr20:50082055|50082254
Strand +
CircType exon
Host Gene ENSG00000244687.10;
Algorism CIRI2;
Sequence CCCTGGTTTCTTTAAGTCTTAAGTGATGCCCCTTCCAAACCATCATCCTGTCCCCACGCTCCTCCACTCCCGCCCTTGGCCGAAGCATAGATTGTAACCCCTCCACTCCCCTCTGAGATTGGCCTTCGGTGAGGAATTCAGGGCTTTCCCCATATCTTCTCTCCCCCACCTTTATCGAGGGGTGCTGCTTTTTCTCCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:50082055|50082254 hsa-miR-15a-5p 0 0 1
chr20:50082055|50082254 hsa-miR-15a-3p 0 0 1
chr20:50082055|50082254 hsa-miR-208a-5p 0 0 1
chr20:50082055|50082254 hsa-miR-208a-3p 0 0 1
chr20:50082055|50082254 hsa-miR-216a-5p 0 0 1
chr20:50082055|50082254 hsa-miR-216a-3p 0 0 1
chr20:50082055|50082254 hsa-miR-15b-5p 0 0 1
chr20:50082055|50082254 hsa-miR-15b-3p 0 0 1
chr20:50082055|50082254 hsa-miR-185-5p 0 0 1
chr20:50082055|50082254 hsa-miR-185-3p 0 0 1
chr20:50082055|50082254 hsa-miR-186-5p 0 0 1
chr20:50082055|50082254 hsa-miR-186-3p 0 0 1
chr20:50082055|50082254 hsa-miR-195-5p 0 0 1
chr20:50082055|50082254 hsa-miR-195-3p 0 0 1
chr20:50082055|50082254 hsa-miR-424-5p 0 0 1
chr20:50082055|50082254 hsa-miR-424-3p 0 0 1
chr20:50082055|50082254 hsa-miR-497-5p 0 0 1
chr20:50082055|50082254 hsa-miR-497-3p 0 0 1
chr20:50082055|50082254 hsa-miR-625-5p 0 0 1
chr20:50082055|50082254 hsa-miR-625-3p 0 0 1
chr20:50082055|50082254 hsa-miR-765 1 0 1
chr20:50082055|50082254 hsa-miR-208b-5p 0 0 1
chr20:50082055|50082254 hsa-miR-208b-3p 0 0 1
chr20:50082055|50082254 hsa-miR-1253 0 0 1
chr20:50082055|50082254 hsa-miR-548m 0 0 1
chr20:50082055|50082254 hsa-miR-1275 1 1 1
chr20:50082055|50082254 hsa-miR-491-5p 0 0 1
chr20:50082055|50082254 hsa-miR-16 0 0 1
chr20:50082055|50082254 hsa-miR-499-5p 0 0 1
chr20:50082055|50082254 hsa-miR-608 1 0 0
chr20:50082055|50082254 hsa-miR-637 1 0 0
chr20:50082055|50082254 hsa-miR-663a 1 0 0
chr20:50082055|50082254 hsa-miR-658 1 0 0
chr20:50082055|50082254 hsa-miR-1268a 1 0 0
chr20:50082055|50082254 hsa-miR-1270 1 0 0
chr20:50082055|50082254 hsa-miR-2110 0 1 0
chr20:50082055|50082254 hsa-miR-3132 1 0 0
chr20:50082055|50082254 hsa-miR-3138 1 0 0
chr20:50082055|50082254 hsa-miR-3141 1 1 0
chr20:50082055|50082254 hsa-miR-3175 0 1 0
chr20:50082055|50082254 hsa-miR-3196 1 0 0
chr20:50082055|50082254 hsa-miR-4298 1 0 0
chr20:50082055|50082254 hsa-miR-4257 1 0 0
chr20:50082055|50082254 hsa-miR-4271 1 0 0
chr20:50082055|50082254 hsa-miR-3652 1 0 0
chr20:50082055|50082254 hsa-miR-3945 1 0 0
chr20:50082055|50082254 hsa-miR-1268b 1 0 0
chr20:50082055|50082254 hsa-miR-4430 1 0 0
chr20:50082055|50082254 hsa-miR-4440 1 0 0
chr20:50082055|50082254 hsa-miR-4443 1 0 0
chr20:50082055|50082254 hsa-miR-4452 0 1 0
chr20:50082055|50082254 hsa-miR-4484 1 0 0
chr20:50082055|50082254 hsa-miR-4488 1 0 0
chr20:50082055|50082254 hsa-miR-4489 1 0 0
chr20:50082055|50082254 hsa-miR-2392 1 0 0
chr20:50082055|50082254 hsa-miR-4510 1 1 0
chr20:50082055|50082254 hsa-miR-4534 1 0 0
chr20:50082055|50082254 hsa-miR-4644 0 1 0
chr20:50082055|50082254 hsa-miR-4651 1 0 0
chr20:50082055|50082254 hsa-miR-4658 1 0 0
chr20:50082055|50082254 hsa-miR-4688 1 1 0
chr20:50082055|50082254 hsa-miR-4689 1 0 0
chr20:50082055|50082254 hsa-miR-4706 1 0 0
chr20:50082055|50082254 hsa-miR-4739 1 1 0
chr20:50082055|50082254 hsa-miR-4784 1 0 0
chr20:50082055|50082254 hsa-miR-5090 1 0 0
chr20:50082055|50082254 hsa-miR-5192 1 0 0
chr20:50082055|50082254 hsa-miR-5194 1 0 0
chr20:50082055|50082254 hsa-miR-5698 1 1 0
chr20:50082055|50082254 hsa-miR-5739 1 1 0
chr20:50082055|50082254 hsa-miR-5787 1 0 0
chr20:50082055|50082254 hsa-miR-6085 1 0 0
chr20:50082055|50082254 hsa-miR-6090 1 0 0
chr20:50082055|50082254 hsa-miR-6124 1 0 0
chr20:50082055|50082254 hsa-miR-6127 1 0 0
chr20:50082055|50082254 hsa-miR-6130 1 0 0
chr20:50082055|50082254 hsa-miR-6133 1 0 0
chr20:50082055|50082254 hsa-miR-8072 1 0 0
chr20:50082055|50082254 hsa-miR-8085 1 1 0
chr20:50082055|50082254 hsa-miR-8087 0 1 0
chr20:50082055|50082254 hsa-miR-8089 1 1 0
chr20:50082055|50082254 hsa-miR-12114 1 0 0
chr20:50082055|50082254 hsa-miR-12115 1 1 0
chr20:50082055|50082254 hsa-miR-12119 1 0 0
chr20:50082055|50082254 hsa-miR-4433b-3p 1 1 0
chr20:50082055|50082254 hsa-miR-92a-2-5p 1 0 0
chr20:50082055|50082254 hsa-miR-122-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6734-5p 1 0 0
chr20:50082055|50082254 hsa-miR-504-3p 1 0 0
chr20:50082055|50082254 hsa-miR-6747-5p 1 0 0
chr20:50082055|50082254 hsa-miR-4433a-3p 1 0 0
chr20:50082055|50082254 hsa-miR-671-5p 1 0 0
chr20:50082055|50082254 hsa-miR-3150a-3p 1 0 0
chr20:50082055|50082254 hsa-miR-7106-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6825-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6894-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6857-5p 1 0 0
chr20:50082055|50082254 hsa-miR-5187-5p 1 1 0
chr20:50082055|50082254 hsa-miR-1227-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6515-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6089 1 0 0
chr20:50082055|50082254 hsa-miR-6880-5p 1 0 0
chr20:50082055|50082254 hsa-miR-7847-3p 1 1 0
chr20:50082055|50082254 hsa-miR-6746-5p 1 1 0
chr20:50082055|50082254 hsa-miR-6730-5p 1 0 0
chr20:50082055|50082254 hsa-miR-7154-3p 1 0 0
chr20:50082055|50082254 hsa-miR-6727-5p 1 0 0
chr20:50082055|50082254 hsa-miR-3622b-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6721-5p 1 0 0
chr20:50082055|50082254 hsa-miR-197-5p 1 0 0
chr20:50082055|50082254 hsa-miR-8069 1 1 0
chr20:50082055|50082254 hsa-miR-7845-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6742-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6716-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6871-5p 1 0 0
chr20:50082055|50082254 hsa-miR-3151-5p 1 0 0
chr20:50082055|50082254 hsa-miR-1292-5p 1 0 0
chr20:50082055|50082254 hsa-miR-3180-3p 1 0 0
chr20:50082055|50082254 hsa-miR-6796-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6732-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6798-5p 1 0 0
chr20:50082055|50082254 hsa-miR-486-3p 1 0 0
chr20:50082055|50082254 hsa-miR-6760-5p 0 1 0
chr20:50082055|50082254 hsa-miR-6782-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6810-5p 1 1 0
chr20:50082055|50082254 hsa-miR-5006-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6786-5p 1 0 0
chr20:50082055|50082254 hsa-miR-7109-5p 1 0 0
chr20:50082055|50082254 hsa-miR-1226-5p 1 0 0
chr20:50082055|50082254 hsa-miR-4640-5p 1 0 0
chr20:50082055|50082254 hsa-miR-1908-5p 1 0 0
chr20:50082055|50082254 hsa-miR-1228-5p 1 0 0
chr20:50082055|50082254 hsa-miR-296-3p 1 0 0
chr20:50082055|50082254 hsa-miR-6771-5p 1 0 0
chr20:50082055|50082254 hsa-miR-92b-5p 1 0 0
chr20:50082055|50082254 hsa-miR-877-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6847-5p 1 0 0
chr20:50082055|50082254 hsa-miR-3202 0 1 0
chr20:50082055|50082254 hsa-miR-4743-5p 1 0 0
chr20:50082055|50082254 hsa-miR-4787-5p 1 0 0
chr20:50082055|50082254 hsa-miR-4446-3p 1 0 0
chr20:50082055|50082254 hsa-miR-149-3p 1 0 0
chr20:50082055|50082254 hsa-miR-6824-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6789-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6802-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6781-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6878-5p 0 1 0
chr20:50082055|50082254 hsa-miR-3065-3p 0 1 0
chr20:50082055|50082254 hsa-miR-423-5p 1 0 0
chr20:50082055|50082254 hsa-miR-483-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6779-3p 0 1 0
chr20:50082055|50082254 hsa-miR-3179 0 1 0
chr20:50082055|50082254 hsa-miR-10400-5p 1 0 0
chr20:50082055|50082254 hsa-miR-1233-5p 1 0 0
chr20:50082055|50082254 hsa-miR-4763-3p 1 0 0
chr20:50082055|50082254 hsa-miR-6769b-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6778-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6787-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6816-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6865-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6870-5p 1 1 0
chr20:50082055|50082254 hsa-miR-6775-5p 1 0 0
chr20:50082055|50082254 hsa-miR-1343-5p 1 0 0
chr20:50082055|50082254 hsa-miR-3180 1 0 0
chr20:50082055|50082254 hsa-miR-5001-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6737-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6743-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6752-5p 1 1 0
chr20:50082055|50082254 hsa-miR-6756-5p 1 1 0
chr20:50082055|50082254 hsa-miR-6769a-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6803-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6813-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6819-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6842-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6851-5p 1 0 0
chr20:50082055|50082254 hsa-miR-7107-5p 1 0 0
chr20:50082055|50082254 hsa-miR-7110-5p 1 0 0
chr20:50082055|50082254 hsa-miR-10401-5p 1 0 0
chr20:50082055|50082254 hsa-miR-11181-3p 1 0 0
chr20:50082055|50082254 hsa-miR-1249-5p 1 1 0
chr20:50082055|50082254 hsa-miR-6722-3p 1 0 0
chr20:50082055|50082254 hsa-miR-6751-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6763-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6779-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6780a-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6797-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6879-5p 1 0 0
chr20:50082055|50082254 hsa-miR-7111-5p 1 1 0
chr20:50082055|50082254 hsa-miR-4728-5p 1 1 0
chr20:50082055|50082254 hsa-miR-5196-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6780b-5p 1 0 0
chr20:50082055|50082254 hsa-miR-10396a-5p 1 0 0
chr20:50082055|50082254 hsa-miR-10396b-5p 1 0 0
chr20:50082055|50082254 hsa-miR-1237-5p 1 0 0
chr20:50082055|50082254 hsa-miR-1909-3p 1 0 0
chr20:50082055|50082254 hsa-miR-328-5p 1 0 0
chr20:50082055|50082254 hsa-miR-4649-5p 1 0 0
chr20:50082055|50082254 hsa-miR-4701-3p 1 0 0
chr20:50082055|50082254 hsa-miR-4745-5p 1 0 0
chr20:50082055|50082254 hsa-miR-4749-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6729-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6738-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6777-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6795-5p 1 1 0
chr20:50082055|50082254 hsa-miR-6846-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6848-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6883-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6887-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6889-5p 1 0 0
chr20:50082055|50082254 hsa-miR-4436b-3p 1 0 0
chr20:50082055|50082254 hsa-miR-4723-5p 1 1 0
chr20:50082055|50082254 hsa-miR-939-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6731-5p 1 1 0
chr20:50082055|50082254 hsa-miR-6856-5p 1 0 0
chr20:50082055|50082254 hsa-miR-4665-5p 1 1 0
chr20:50082055|50082254 hsa-miR-3679-5p 1 1 0
chr20:50082055|50082254 hsa-miR-6891-5p 1 0 0
chr20:50082055|50082254 hsa-miR-4472 1 0 0
chr20:50082055|50082254 hsa-miR-6766-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6790-5p 1 0 0
chr20:50082055|50082254 hsa-miR-6849-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr20:50082055|50082254
ORF Type ORF1
Protein Length 29
Nucleotide Length 87
Protein Sequence MRLAFGEEFRAFPISSLPHLYRGVLLFLP
Nucleotide Sequence CTGAGATTGGCCTTCGGTGAGGAATTCAGGGCTTTCCCCATATCTTCTCTCCCCCACCTTTATCGAGGGGTGCTGCTTTTTCTCCCT
CircID chr20:50082055|50082254
ORF Type ORF2
Protein Length 29
Nucleotide Length 87
Protein Sequence MLRPRAGVEERGDRMMVWKGHHLRLKETR
Nucleotide Sequence ATGCTTCGGCCAAGGGCGGGAGTGGAGGAGCGTGGGGACAGGATGATGGTTTGGAAGGGGCATCACTTAAGACTTAAAGAAACCAGG
CircID chr20:50082055|50082254
ORF Type ORF3
Protein Length 36
Nucleotide Length 111
Protein Sequence MGKALNSSPKANLRGEWRGYNLCFGQGREWRSVGTG
Nucleotide Sequence ATGGGGAAAGCCCTGAATTCCTCACCGAAGGCCAATCTCAGAGGGGAGTGGAGGGGTTACAATCTATGCTTCGGCCAAGGGCGGGAGTGGAGGAGCGTGGGGACAGGATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab