CircRNA Information

General Information
circRNA Basic Information
CircID chr20:50124892|50125137
Strand +
CircType exon
Host Gene ENSG00000240849.9;
Algorism CIRI2;
Sequence GCCTGGAGGACCTCATCCAGGGCCTGACGGGCGAGAAGCCTCGGGCAGATGACATGAAATGGGCCCAGAAGATCAAATAACTTCTCCGAGCCTGCTACCTGGTTGCCAACCTTCCCTAGCCCCCAAACCGAAGCCATCTGCCAAATTCCAGCCTCTTTGAGCTGGCCCCTCCAGATGGAGAGGACATCTCCTGGGCTGGGCCCAGGTACCCCAGCCCACCCCTCATGACACAGAATACTTGAGCCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:50124892|50125137 hsa-miR-26b-5p 0 0 1
chr20:50124892|50125137 hsa-miR-26b-3p 0 0 1
chr20:50124892|50125137 hsa-miR-96-5p 0 0 1
chr20:50124892|50125137 hsa-miR-96-3p 0 0 1
chr20:50124892|50125137 hsa-miR-182-5p 0 0 1
chr20:50124892|50125137 hsa-miR-182-3p 0 0 1
chr20:50124892|50125137 hsa-miR-136-5p 0 0 1
chr20:50124892|50125137 hsa-miR-136-3p 0 0 1
chr20:50124892|50125137 hsa-miR-135b-5p 0 0 1
chr20:50124892|50125137 hsa-miR-135b-3p 0 0 1
chr20:50124892|50125137 hsa-miR-484 0 0 1
chr20:50124892|50125137 hsa-miR-583 0 0 1
chr20:50124892|50125137 hsa-miR-592 0 0 1
chr20:50124892|50125137 hsa-miR-597-5p 0 0 1
chr20:50124892|50125137 hsa-miR-597-3p 0 0 1
chr20:50124892|50125137 hsa-miR-608 1 1 1
chr20:50124892|50125137 hsa-miR-612 1 0 1
chr20:50124892|50125137 hsa-miR-619-5p 0 0 1
chr20:50124892|50125137 hsa-miR-619-3p 0 0 1
chr20:50124892|50125137 hsa-miR-630 0 1 1
chr20:50124892|50125137 hsa-miR-1271-5p 0 0 1
chr20:50124892|50125137 hsa-miR-1271-3p 0 0 1
chr20:50124892|50125137 hsa-miR-541-5p 0 0 1
chr20:50124892|50125137 hsa-miR-541-3p 0 0 1
chr20:50124892|50125137 hsa-miR-665 0 0 1
chr20:50124892|50125137 hsa-miR-1291 0 1 1
chr20:50124892|50125137 hsa-miR-1297 0 0 1
chr20:50124892|50125137 hsa-miR-1255a 0 0 1
chr20:50124892|50125137 hsa-miR-1275 0 0 1
chr20:50124892|50125137 hsa-miR-296-5p 0 0 1
chr20:50124892|50125137 hsa-miR-485-5p 0 0 1
chr20:50124892|50125137 hsa-miR-423-5p 0 1 1
chr20:50124892|50125137 hsa-miR-654-5p 0 0 1
chr20:50124892|50125137 hsa-miR-324-3p 0 0 1
chr20:50124892|50125137 hsa-miR-1255b 0 0 1
chr20:50124892|50125137 hsa-miR-26a 0 0 1
chr20:50124892|50125137 hsa-miR-1285 0 0 1
chr20:50124892|50125137 hsa-miR-135a 0 0 1
chr20:50124892|50125137 hsa-miR-516b 0 0 1
chr20:50124892|50125137 hsa-miR-24 0 0 1
chr20:50124892|50125137 hsa-miR-1826 0 0 1
chr20:50124892|50125137 hsa-miR-637 1 0 0
chr20:50124892|50125137 hsa-miR-762 1 1 0
chr20:50124892|50125137 hsa-miR-760 1 0 0
chr20:50124892|50125137 hsa-miR-4296 1 0 0
chr20:50124892|50125137 hsa-miR-3652 1 0 0
chr20:50124892|50125137 hsa-miR-4465 1 1 0
chr20:50124892|50125137 hsa-miR-4488 1 0 0
chr20:50124892|50125137 hsa-miR-4489 1 1 0
chr20:50124892|50125137 hsa-miR-4507 1 0 0
chr20:50124892|50125137 hsa-miR-1587 1 1 0
chr20:50124892|50125137 hsa-miR-4538 1 0 0
chr20:50124892|50125137 hsa-miR-4651 1 1 0
chr20:50124892|50125137 hsa-miR-4688 1 0 0
chr20:50124892|50125137 hsa-miR-4739 1 0 0
chr20:50124892|50125137 hsa-miR-4741 1 0 0
chr20:50124892|50125137 hsa-miR-4748 1 0 0
chr20:50124892|50125137 hsa-miR-5194 0 1 0
chr20:50124892|50125137 hsa-miR-5572 1 0 0
chr20:50124892|50125137 hsa-miR-5685 0 1 0
chr20:50124892|50125137 hsa-miR-5787 1 1 0
chr20:50124892|50125137 hsa-miR-6069 0 1 0
chr20:50124892|50125137 hsa-miR-6086 1 1 0
chr20:50124892|50125137 hsa-miR-7150 1 0 0
chr20:50124892|50125137 hsa-miR-8089 1 0 0
chr20:50124892|50125137 hsa-miR-9500 1 1 0
chr20:50124892|50125137 hsa-miR-11399 1 0 0
chr20:50124892|50125137 hsa-miR-432-3p 0 1 0
chr20:50124892|50125137 hsa-miR-128-1-5p 1 0 0
chr20:50124892|50125137 hsa-miR-6734-5p 0 1 0
chr20:50124892|50125137 hsa-miR-7155-5p 0 1 0
chr20:50124892|50125137 hsa-miR-125b-1-3p 1 0 0
chr20:50124892|50125137 hsa-miR-7106-5p 1 0 0
chr20:50124892|50125137 hsa-miR-6857-5p 1 0 0
chr20:50124892|50125137 hsa-miR-6854-5p 1 0 0
chr20:50124892|50125137 hsa-miR-6089 1 0 0
chr20:50124892|50125137 hsa-miR-6757-5p 1 0 0
chr20:50124892|50125137 hsa-miR-7160-5p 1 0 0
chr20:50124892|50125137 hsa-miR-6741-5p 1 0 0
chr20:50124892|50125137 hsa-miR-8069 1 0 0
chr20:50124892|50125137 hsa-miR-432-5p 0 1 0
chr20:50124892|50125137 hsa-miR-6742-5p 1 0 0
chr20:50124892|50125137 hsa-miR-423-3p 1 0 0
chr20:50124892|50125137 hsa-miR-3190-3p 1 0 0
chr20:50124892|50125137 hsa-miR-6881-5p 1 0 0
chr20:50124892|50125137 hsa-miR-6782-5p 1 1 0
chr20:50124892|50125137 hsa-miR-3934-3p 1 0 0
chr20:50124892|50125137 hsa-miR-939-3p 0 1 0
chr20:50124892|50125137 hsa-miR-6740-5p 0 1 0
chr20:50124892|50125137 hsa-miR-4640-5p 1 1 0
chr20:50124892|50125137 hsa-miR-5010-3p 1 0 0
chr20:50124892|50125137 hsa-miR-296-3p 1 0 0
chr20:50124892|50125137 hsa-miR-6771-5p 1 0 0
chr20:50124892|50125137 hsa-miR-4690-5p 1 0 0
chr20:50124892|50125137 hsa-miR-6824-5p 1 1 0
chr20:50124892|50125137 hsa-miR-3162-5p 1 0 0
chr20:50124892|50125137 hsa-miR-7154-5p 1 0 0
chr20:50124892|50125137 hsa-miR-6866-5p 0 1 0
chr20:50124892|50125137 hsa-miR-664b-5p 1 0 0
chr20:50124892|50125137 hsa-miR-2355-3p 0 1 0
chr20:50124892|50125137 hsa-miR-7158-5p 1 0 0
chr20:50124892|50125137 hsa-miR-5002-5p 0 1 0
chr20:50124892|50125137 hsa-miR-1207-5p 1 0 0
chr20:50124892|50125137 hsa-miR-4763-3p 1 0 0
chr20:50124892|50125137 hsa-miR-6769b-5p 1 0 0
chr20:50124892|50125137 hsa-miR-6865-5p 1 0 0
chr20:50124892|50125137 hsa-miR-5001-5p 1 0 0
chr20:50124892|50125137 hsa-miR-6737-5p 1 0 0
chr20:50124892|50125137 hsa-miR-6743-5p 1 0 0
chr20:50124892|50125137 hsa-miR-6754-5p 1 0 0
chr20:50124892|50125137 hsa-miR-6756-5p 1 1 0
chr20:50124892|50125137 hsa-miR-6803-5p 1 0 0
chr20:50124892|50125137 hsa-miR-6813-5p 1 1 0
chr20:50124892|50125137 hsa-miR-6815-5p 1 1 0
chr20:50124892|50125137 hsa-miR-6819-5p 1 0 0
chr20:50124892|50125137 hsa-miR-6851-5p 1 0 0
chr20:50124892|50125137 hsa-miR-6751-5p 1 0 0
chr20:50124892|50125137 hsa-miR-6763-5p 1 0 0
chr20:50124892|50125137 hsa-miR-6779-5p 1 0 0
chr20:50124892|50125137 hsa-miR-6780a-5p 1 0 0
chr20:50124892|50125137 hsa-miR-6797-5p 1 0 0
chr20:50124892|50125137 hsa-miR-6879-5p 1 0 0
chr20:50124892|50125137 hsa-miR-3620-5p 1 1 0
chr20:50124892|50125137 hsa-miR-4728-5p 1 0 0
chr20:50124892|50125137 hsa-miR-6780b-5p 1 1 0
chr20:50124892|50125137 hsa-miR-1237-5p 1 0 0
chr20:50124892|50125137 hsa-miR-328-5p 1 0 0
chr20:50124892|50125137 hsa-miR-4649-5p 1 0 0
chr20:50124892|50125137 hsa-miR-4726-5p 1 1 0
chr20:50124892|50125137 hsa-miR-6729-5p 1 0 0
chr20:50124892|50125137 hsa-miR-675-5p 1 0 0
chr20:50124892|50125137 hsa-miR-6795-5p 1 0 0
chr20:50124892|50125137 hsa-miR-6846-5p 1 1 0
chr20:50124892|50125137 hsa-miR-6848-5p 1 1 0
chr20:50124892|50125137 hsa-miR-6883-5p 1 0 0
chr20:50124892|50125137 hsa-miR-6831-5p 1 0 0
chr20:50124892|50125137 hsa-miR-6845-5p 1 1 0
chr20:50124892|50125137 hsa-miR-3940-5p 1 0 0
chr20:50124892|50125137 hsa-miR-6773-5p 0 1 0
chr20:50124892|50125137 hsa-miR-1914-3p 1 0 0
chr20:50124892|50125137 hsa-miR-6855-5p 1 0 0
chr20:50124892|50125137 hsa-miR-4747-5p 1 0 0
chr20:50124892|50125137 hsa-miR-6750-5p 1 0 0
chr20:50124892|50125137 hsa-miR-3184-5p 0 1 0
chr20:50124892|50125137 hsa-miR-6724-5p 0 1 0
chr20:50124892|50125137 hsa-miR-6762-5p 0 1 0
chr20:50124892|50125137 hsa-miR-6884-5p 0 1 0
chr20:50124892|50125137 hsa-miR-330-5p 1 0 0
chr20:50124892|50125137 hsa-miR-4691-5p 0 1 0
chr20:50124892|50125137 hsa-miR-4690-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr20:50124892|50125137
ORF Type ORF1
Protein Length 41
Nucleotide Length 126
Protein Sequence MPTFPSPQTEAICQIPASLSWPLQMERTSPGLGPGTPAHPS
Nucleotide Sequence TTGCCAACCTTCCCTAGCCCCCAAACCGAAGCCATCTGCCAAATTCCAGCCTCTTTGAGCTGGCCCCTCCAGATGGAGAGGACATCTCCTGGGCTGGGCCCAGGTACCCCAGCCCACCCCTCATGA
CircID chr20:50124892|50125137
ORF Type ORF2
Protein Length 33
Nucleotide Length 102
Protein Sequence MGPEDQITSPSLLPGCQPSLAPKPKPSAKFQPL
Nucleotide Sequence ATGGGCCCAGAAGATCAAATAACTTCTCCGAGCCTGCTACCTGGTTGCCAACCTTCCCTAGCCCCCAAACCGAAGCCATCTGCCAAATTCCAGCCTCTTTGA
CircID chr20:50124892|50125137
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence LEDLIQGLTGEKPRADDMKWAQKIK
Nucleotide Sequence CTGGAGGACCTCATCCAGGGCCTGACGGGCGAGAAGCCTCGGGCAGATGACATGAAATGGGCCCAGAAGATCAAATAA
CircID chr20:50124892|50125137
ORF Type ORF4
Protein Length 34
Nucleotide Length 105
Protein Sequence MPNSSLFELAPPDGEDISWAGPRYPSPPLMTQNT
Nucleotide Sequence CTGCCAAATTCCAGCCTCTTTGAGCTGGCCCCTCCAGATGGAGAGGACATCTCCTGGGCTGGGCCCAGGTACCCCAGCCCACCCCTCATGACACAGAATACTTGA
CircID chr20:50124892|50125137
ORF Type ORF5
Protein Length 33
Nucleotide Length 102
Protein Sequence MEGPAQRGWNLADGFGLGAREGWQPGSRLGEVI
Nucleotide Sequence CTGGAGGGGCCAGCTCAAAGAGGCTGGAATTTGGCAGATGGCTTCGGTTTGGGGGCTAGGGAAGGTTGGCAACCAGGTAGCAGGCTCGGAGAAGTTATTTGA
CircID chr20:50124892|50125137
ORF Type ORF6
Protein Length 77
Nucleotide Length 231
Protein Sequence MCHEGWAGVPGPSPGDVLSIWRGQLKEAGIWQMASVWGLGKVGNQVAGSEKLFDLLGPFHVICPRLLARQALDEVLQ
Nucleotide Sequence CTGTGTCATGAGGGGTGGGCTGGGGTACCTGGGCCCAGCCCAGGAGATGTCCTCTCCATCTGGAGGGGCCAGCTCAAAGAGGCTGGAATTTGGCAGATGGCTTCGGTTTGGGGGCTAGGGAAGGTTGGCAACCAGGTAGCAGGCTCGGAGAAGTTATTTGATCTTCTGGGCCCATTTCATGTCATCTGCCCGAGGCTTCTCGCCCGTCAGGCCCTGGATGAGGTCCTCCAG
CircID chr20:50124892|50125137
ORF Type ORF7
Protein Length 36
Nucleotide Length 111
Protein Sequence MRGGLGYLGPAQEMSSPSGGASSKRLEFGRWLRFGG
Nucleotide Sequence ATGAGGGGTGGGCTGGGGTACCTGGGCCCAGCCCAGGAGATGTCCTCTCCATCTGGAGGGGCCAGCTCAAAGAGGCTGGAATTTGGCAGATGGCTTCGGTTTGGGGGCTAG
CircID chr20:50124892|50125137
ORF Type ORF8
Protein Length 25
Nucleotide Length 75
Protein Sequence MIFWAHFMSSARGFSPVRPWMRSSR
Nucleotide Sequence TTGATCTTCTGGGCCCATTTCATGTCATCTGCCCGAGGCTTCTCGCCCGTCAGGCCCTGGATGAGGTCCTCCAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab