CircRNA Information

General Information
circRNA Basic Information
CircID chr20:50317237|50317429
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence GAAAGGGAGCTGGAAAGCCTCACTTACAGTGTTAACTGATGGAATTTCACGCCGGGTCCCTATACCTTGCAGTTACCTTTAGCCCCATCCATGGCCCCAGGCTCACGAGGTCCTGAGAACAACTTTCCACAGGCCAACTCCAAGGACAATGGAAAGTCCCTTAGCCTGGGCAGCTGACAAGACACAGGCCTGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:50317237|50317429 hsa-miR-22-5p 0 0 1
chr20:50317237|50317429 hsa-miR-22-3p 0 0 1
chr20:50317237|50317429 hsa-miR-204-5p 0 0 1
chr20:50317237|50317429 hsa-miR-204-3p 0 0 1
chr20:50317237|50317429 hsa-miR-211-5p 0 0 1
chr20:50317237|50317429 hsa-miR-211-3p 0 0 1
chr20:50317237|50317429 hsa-miR-141-5p 0 0 1
chr20:50317237|50317429 hsa-miR-141-3p 0 0 1
chr20:50317237|50317429 hsa-miR-200a-5p 0 0 1
chr20:50317237|50317429 hsa-miR-200a-3p 0 0 1
chr20:50317237|50317429 hsa-miR-382-5p 0 0 1
chr20:50317237|50317429 hsa-miR-382-3p 0 0 1
chr20:50317237|50317429 hsa-miR-431-5p 0 0 1
chr20:50317237|50317429 hsa-miR-431-3p 0 0 1
chr20:50317237|50317429 hsa-miR-432-5p 0 0 1
chr20:50317237|50317429 hsa-miR-432-3p 0 0 1
chr20:50317237|50317429 hsa-miR-571 1 1 1
chr20:50317237|50317429 hsa-miR-587 0 0 1
chr20:50317237|50317429 hsa-miR-661 0 1 1
chr20:50317237|50317429 hsa-miR-935 0 0 1
chr20:50317237|50317429 hsa-miR-548m 0 0 1
chr20:50317237|50317429 hsa-miR-1266-5p 0 0 1
chr20:50317237|50317429 hsa-miR-1266-3p 0 0 1
chr20:50317237|50317429 hsa-miR-485-5p 0 0 1
chr20:50317237|50317429 hsa-miR-941 0 0 1
chr20:50317237|50317429 hsa-miR-490-5p 0 0 1
chr20:50317237|50317429 hsa-miR-1207-3p 0 0 1
chr20:50317237|50317429 hsa-miR-663a 1 0 0
chr20:50317237|50317429 hsa-miR-762 1 0 0
chr20:50317237|50317429 hsa-miR-1469 1 0 0
chr20:50317237|50317429 hsa-miR-3143 0 1 0
chr20:50317237|50317429 hsa-miR-4316 0 1 0
chr20:50317237|50317429 hsa-miR-548ai 0 1 0
chr20:50317237|50317429 hsa-miR-4489 1 1 0
chr20:50317237|50317429 hsa-miR-2392 1 0 0
chr20:50317237|50317429 hsa-miR-4507 1 0 0
chr20:50317237|50317429 hsa-miR-3978 0 1 0
chr20:50317237|50317429 hsa-miR-4656 1 0 0
chr20:50317237|50317429 hsa-miR-5787 1 0 0
chr20:50317237|50317429 hsa-miR-8089 1 0 0
chr20:50317237|50317429 hsa-miR-135a-3p 0 1 0
chr20:50317237|50317429 hsa-miR-3187-3p 1 0 0
chr20:50317237|50317429 hsa-miR-3151-5p 1 0 0
chr20:50317237|50317429 hsa-miR-6782-5p 1 0 0
chr20:50317237|50317429 hsa-miR-6735-3p 1 1 0
chr20:50317237|50317429 hsa-miR-6884-3p 1 0 0
chr20:50317237|50317429 hsa-miR-6786-5p 1 0 0
chr20:50317237|50317429 hsa-miR-1229-5p 1 0 0
chr20:50317237|50317429 hsa-miR-4783-3p 1 0 0
chr20:50317237|50317429 hsa-miR-4640-5p 1 0 0
chr20:50317237|50317429 hsa-miR-3691-5p 1 0 0
chr20:50317237|50317429 hsa-miR-3677-3p 0 1 0
chr20:50317237|50317429 hsa-miR-6749-5p 1 0 0
chr20:50317237|50317429 hsa-miR-2276-3p 0 1 0
chr20:50317237|50317429 hsa-miR-6877-5p 1 0 0
chr20:50317237|50317429 hsa-miR-664b-5p 1 1 0
chr20:50317237|50317429 hsa-miR-6811-3p 0 1 0
chr20:50317237|50317429 hsa-miR-2355-3p 0 1 0
chr20:50317237|50317429 hsa-miR-744-5p 1 0 0
chr20:50317237|50317429 hsa-miR-1296-5p 1 0 0
chr20:50317237|50317429 hsa-miR-6508-3p 0 1 0
chr20:50317237|50317429 hsa-miR-1296-3p 1 0 0
chr20:50317237|50317429 hsa-miR-329-5p 0 1 0
chr20:50317237|50317429 hsa-miR-6812-5p 1 0 0
chr20:50317237|50317429 hsa-miR-6756-5p 1 1 0
chr20:50317237|50317429 hsa-miR-6851-5p 1 0 0
chr20:50317237|50317429 hsa-miR-7107-5p 1 0 0
chr20:50317237|50317429 hsa-miR-6779-5p 1 0 0
chr20:50317237|50317429 hsa-miR-4728-5p 1 0 0
chr20:50317237|50317429 hsa-miR-10396a-5p 1 0 0
chr20:50317237|50317429 hsa-miR-10396b-5p 1 0 0
chr20:50317237|50317429 hsa-miR-4726-5p 1 0 0
chr20:50317237|50317429 hsa-miR-4745-5p 1 0 0
chr20:50317237|50317429 hsa-miR-6794-5p 1 0 0
chr20:50317237|50317429 hsa-miR-365b-5p 0 1 0
chr20:50317237|50317429 hsa-miR-6855-5p 1 0 0
chr20:50317237|50317429 hsa-miR-6791-5p 1 0 0
chr20:50317237|50317429 hsa-miR-6762-5p 1 1 0
chr20:50317237|50317429 hsa-miR-873-5p 0 1 0
chr20:50317237|50317429 hsa-miR-570-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:50317237|50317429
ORF Type ORF1
Protein Length 36
Nucleotide Length 111
Protein Sequence MQLPLAPSMAPGSRGPENNFPQANSKDNGKSLSLGS
Nucleotide Sequence TTGCAGTTACCTTTAGCCCCATCCATGGCCCCAGGCTCACGAGGTCCTGAGAACAACTTTCCACAGGCCAACTCCAAGGACAATGGAAAGTCCCTTAGCCTGGGCAGCTGA
CircID chr20:50317237|50317429
ORF Type ORF2
Protein Length 27
Nucleotide Length 81
Protein Sequence MRTTFHRPTPRTMESPLAWAADKTQAW
Nucleotide Sequence CTGAGAACAACTTTCCACAGGCCAACTCCAAGGACAATGGAAAGTCCCTTAGCCTGGGCAGCTGACAAGACACAGGCCTGG
CircID chr20:50317237|50317429
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MMEFHAGSLYLAVTFSPIHGPRLTRS
Nucleotide Sequence CTGATGGAATTTCACGCCGGGTCCCTATACCTTGCAGTTACCTTTAGCCCCATCCATGGCCCCAGGCTCACGAGGTCCTGA
CircID chr20:50317237|50317429
ORF Type ORF4
Protein Length 25
Nucleotide Length 78
Protein Sequence MSAAQAKGLSIVLGVGLWKVVLRTS
Nucleotide Sequence TTGTCAGCTGCCCAGGCTAAGGGACTTTCCATTGTCCTTGGAGTTGGCCTGTGGAAAGTTGTTCTCAGGACCTCGTGA
CircID chr20:50317237|50317429
ORF Type ORF5
Protein Length 37
Nucleotide Length 114
Protein Sequence MPRLRDFPLSLELACGKLFSGPREPGAMDGAKGNCKV
Nucleotide Sequence CTGCCCAGGCTAAGGGACTTTCCATTGTCCTTGGAGTTGGCCTGTGGAAAGTTGTTCTCAGGACCTCGTGAGCCTGGGGCCATGGATGGGGCTAAAGGTAACTGCAAGGTATAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab