CircRNA Information

General Information
circRNA Basic Information
CircID chr20:51337241|51337488
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGGATGAGTCAAGAACTTTTTAGTCACAAGAAAGAGAAAATCTACTGAAATGGGACTAAGCCAAGAAAAGGAAATGAACTGGCACGTACCACAGAAAGTCAAGGTGTGGATGGATTCAGGAAGTGATGTTTCCAGGAATCTCTCTCCCTTGATCTCACATGCTAATTTCCTCTACCTTGGCTACATCCTCAGGTGAGCTCTTTCCAAGCACTGGCTAAACCTCCCCACCCTACCCCCAGTGACAACT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:51337241|51337488 hsa-miR-134-5p 0 0 1
chr20:51337241|51337488 hsa-miR-134-3p 0 0 1
chr20:51337241|51337488 hsa-miR-185-5p 0 0 1
chr20:51337241|51337488 hsa-miR-185-3p 0 0 1
chr20:51337241|51337488 hsa-miR-494-5p 0 0 1
chr20:51337241|51337488 hsa-miR-494-3p 0 0 1
chr20:51337241|51337488 hsa-miR-520f-5p 0 0 1
chr20:51337241|51337488 hsa-miR-520f-3p 0 0 1
chr20:51337241|51337488 hsa-miR-526b-5p 0 0 1
chr20:51337241|51337488 hsa-miR-526b-3p 0 0 1
chr20:51337241|51337488 hsa-miR-575 0 1 1
chr20:51337241|51337488 hsa-miR-578 0 0 1
chr20:51337241|51337488 hsa-miR-579-5p 0 0 1
chr20:51337241|51337488 hsa-miR-579-3p 0 0 1
chr20:51337241|51337488 hsa-miR-581 0 0 1
chr20:51337241|51337488 hsa-miR-636 0 0 1
chr20:51337241|51337488 hsa-miR-637 1 0 1
chr20:51337241|51337488 hsa-miR-758-5p 0 0 1
chr20:51337241|51337488 hsa-miR-758-3p 0 0 1
chr20:51337241|51337488 hsa-miR-668-5p 0 0 1
chr20:51337241|51337488 hsa-miR-668-3p 0 0 1
chr20:51337241|51337488 hsa-miR-877-5p 0 0 1
chr20:51337241|51337488 hsa-miR-877-3p 0 0 1
chr20:51337241|51337488 hsa-miR-936 0 0 1
chr20:51337241|51337488 hsa-miR-939-5p 0 0 1
chr20:51337241|51337488 hsa-miR-939-3p 0 0 1
chr20:51337241|51337488 hsa-miR-1228-5p 0 0 1
chr20:51337241|51337488 hsa-miR-1228-3p 0 0 1
chr20:51337241|51337488 hsa-miR-1200 0 0 1
chr20:51337241|51337488 hsa-miR-1265 1 1 1
chr20:51337241|51337488 hsa-miR-1276 0 1 1
chr20:51337241|51337488 hsa-miR-1825 0 0 1
chr20:51337241|51337488 hsa-miR-491-5p 0 0 1
chr20:51337241|51337488 hsa-miR-875-3p 0 1 1
chr20:51337241|51337488 hsa-miR-199b-3p 0 0 1
chr20:51337241|51337488 hsa-miR-199a-3p 0 0 1
chr20:51337241|51337488 hsa-miR-1185 0 0 1
chr20:51337241|51337488 hsa-miR-499-3p 0 0 1
chr20:51337241|51337488 hsa-miR-608 1 0 0
chr20:51337241|51337488 hsa-miR-762 1 0 0
chr20:51337241|51337488 hsa-miR-1268a 1 0 0
chr20:51337241|51337488 hsa-miR-3132 1 0 0
chr20:51337241|51337488 hsa-miR-544b 0 1 0
chr20:51337241|51337488 hsa-miR-3137 1 0 0
chr20:51337241|51337488 hsa-miR-1268b 1 0 0
chr20:51337241|51337488 hsa-miR-4533 1 1 0
chr20:51337241|51337488 hsa-miR-4538 1 0 0
chr20:51337241|51337488 hsa-miR-3978 0 1 0
chr20:51337241|51337488 hsa-miR-4644 0 1 0
chr20:51337241|51337488 hsa-miR-4651 1 0 0
chr20:51337241|51337488 hsa-miR-4689 1 0 0
chr20:51337241|51337488 hsa-miR-4706 1 0 0
chr20:51337241|51337488 hsa-miR-5572 1 0 0
chr20:51337241|51337488 hsa-miR-5787 1 0 0
chr20:51337241|51337488 hsa-miR-8085 0 1 0
chr20:51337241|51337488 hsa-miR-8089 1 0 0
chr20:51337241|51337488 hsa-miR-12114 1 0 0
chr20:51337241|51337488 hsa-miR-4435 1 0 0
chr20:51337241|51337488 hsa-miR-92a-2-5p 0 1 0
chr20:51337241|51337488 hsa-miR-6747-5p 1 0 0
chr20:51337241|51337488 hsa-miR-6825-5p 1 1 0
chr20:51337241|51337488 hsa-miR-6894-5p 1 0 0
chr20:51337241|51337488 hsa-miR-6857-5p 1 0 0
chr20:51337241|51337488 hsa-miR-6799-5p 0 1 0
chr20:51337241|51337488 hsa-miR-6510-5p 1 0 0
chr20:51337241|51337488 hsa-miR-6804-5p 1 0 0
chr20:51337241|51337488 hsa-miR-6880-5p 1 1 0
chr20:51337241|51337488 hsa-miR-7847-3p 1 0 0
chr20:51337241|51337488 hsa-miR-145-3p 0 1 0
chr20:51337241|51337488 hsa-miR-3622b-5p 1 0 0
chr20:51337241|51337488 hsa-miR-197-5p 1 0 0
chr20:51337241|51337488 hsa-miR-6742-5p 1 0 0
chr20:51337241|51337488 hsa-miR-3605-5p 0 1 0
chr20:51337241|51337488 hsa-miR-6772-5p 1 0 0
chr20:51337241|51337488 hsa-miR-6796-5p 1 0 0
chr20:51337241|51337488 hsa-miR-6760-5p 0 1 0
chr20:51337241|51337488 hsa-miR-6881-5p 1 0 0
chr20:51337241|51337488 hsa-miR-6782-5p 1 0 0
chr20:51337241|51337488 hsa-miR-6786-5p 1 0 0
chr20:51337241|51337488 hsa-miR-6835-5p 1 0 0
chr20:51337241|51337488 hsa-miR-5187-3p 0 1 0
chr20:51337241|51337488 hsa-miR-1229-5p 1 1 0
chr20:51337241|51337488 hsa-miR-296-3p 1 0 0
chr20:51337241|51337488 hsa-miR-6771-5p 1 0 0
chr20:51337241|51337488 hsa-miR-6847-5p 0 1 0
chr20:51337241|51337488 hsa-miR-6824-5p 0 1 0
chr20:51337241|51337488 hsa-miR-1250-5p 1 0 0
chr20:51337241|51337488 hsa-miR-616-3p 1 0 0
chr20:51337241|51337488 hsa-miR-7151-5p 0 1 0
chr20:51337241|51337488 hsa-miR-6769b-5p 1 0 0
chr20:51337241|51337488 hsa-miR-6812-5p 1 0 0
chr20:51337241|51337488 hsa-miR-6816-5p 1 0 0
chr20:51337241|51337488 hsa-miR-6752-5p 1 0 0
chr20:51337241|51337488 hsa-miR-6756-5p 1 0 0
chr20:51337241|51337488 hsa-miR-6803-5p 1 1 0
chr20:51337241|51337488 hsa-miR-6819-5p 1 0 0
chr20:51337241|51337488 hsa-miR-6842-5p 1 0 0
chr20:51337241|51337488 hsa-miR-6851-5p 1 0 0
chr20:51337241|51337488 hsa-miR-7110-5p 1 0 0
chr20:51337241|51337488 hsa-miR-6751-5p 1 1 0
chr20:51337241|51337488 hsa-miR-7111-5p 1 0 0
chr20:51337241|51337488 hsa-miR-4728-5p 1 0 0
chr20:51337241|51337488 hsa-miR-5196-5p 1 0 0
chr20:51337241|51337488 hsa-miR-1237-5p 1 0 0
chr20:51337241|51337488 hsa-miR-4685-5p 1 0 0
chr20:51337241|51337488 hsa-miR-4725-3p 1 0 0
chr20:51337241|51337488 hsa-miR-6831-5p 1 0 0
chr20:51337241|51337488 hsa-miR-6731-5p 0 1 0
chr20:51337241|51337488 hsa-miR-4700-5p 1 1 0
chr20:51337241|51337488 hsa-miR-3679-5p 1 0 0
chr20:51337241|51337488 hsa-miR-6766-5p 1 0 0
chr20:51337241|51337488 hsa-miR-4667-5p 1 0 0
chr20:51337241|51337488 hsa-miR-6791-5p 1 0 0
chr20:51337241|51337488 hsa-miR-4676-5p 0 1 0
chr20:51337241|51337488 hsa-miR-10397-5p 0 1 0
chr20:51337241|51337488 hsa-miR-3140-5p 0 1 0
chr20:51337241|51337488 hsa-miR-376a-2-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr20:51337241|51337488
ORF Type ORF1
Protein Length 48
Nucleotide Length 147
Protein Sequence MGLSQEKEMNWHVPQKVKVWMDSGSDVSRNLSPLISHANFLYLGYILR
Nucleotide Sequence ATGGGACTAAGCCAAGAAAAGGAAATGAACTGGCACGTACCACAGAAAGTCAAGGTGTGGATGGATTCAGGAAGTGATGTTTCCAGGAATCTCTCTCCCTTGATCTCACATGCTAATTTCCTCTACCTTGGCTACATCCTCAGGTGA
CircID chr20:51337241|51337488
ORF Type ORF2
Protein Length 45
Nucleotide Length 135
Protein Sequence METSLPESIHTLTFCGTCQFISFSWLSPISVDFLFLVTKKFLTHP
Nucleotide Sequence CTGGAAACATCACTTCCTGAATCCATCCACACCTTGACTTTCTGTGGTACGTGCCAGTTCATTTCCTTTTCTTGGCTTAGTCCCATTTCAGTAGATTTTCTCTTTCTTGTGACTAAAAAGTTCTTGACTCATCCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab