CircRNA Information

General Information
circRNA Basic Information
CircID chr20:56367342|56367565
Strand +
CircType exon
Host Gene ENSG00000124098.9;
Algorism CIRI2;
Sequence CTCCTGGGTTCAAGCAATGCTGCCTCAGCCTCCCCAGTAGCTGGGACTACAGGCGTGTGCCACCACACCCGGCTAATTTTTGTATTTGTAGTAGAGACGGGGTTTCATCATGTTGGCCAGGCTGGTCTCGAACTCCTGGCCTCAAGTGACACGCCTGCCTCAACCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCTGGCCTCTATGCTCGAATTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:56367342|56367565 hsa-miR-107 0 1 1
chr20:56367342|56367565 hsa-miR-597-5p 0 0 1
chr20:56367342|56367565 hsa-miR-597-3p 0 0 1
chr20:56367342|56367565 hsa-miR-668-5p 0 0 1
chr20:56367342|56367565 hsa-miR-668-3p 0 0 1
chr20:56367342|56367565 hsa-miR-675-5p 0 0 1
chr20:56367342|56367565 hsa-miR-675-3p 0 0 1
chr20:56367342|56367565 hsa-miR-665 0 1 1
chr20:56367342|56367565 hsa-miR-939-5p 0 0 1
chr20:56367342|56367565 hsa-miR-939-3p 0 0 1
chr20:56367342|56367565 hsa-miR-940 0 0 1
chr20:56367342|56367565 hsa-miR-1304-5p 0 0 1
chr20:56367342|56367565 hsa-miR-1304-3p 0 0 1
chr20:56367342|56367565 hsa-miR-1272 0 0 1
chr20:56367342|56367565 hsa-miR-1827 0 1 1
chr20:56367342|56367565 hsa-miR-1283 0 0 1
chr20:56367342|56367565 hsa-miR-485-5p 0 0 1
chr20:56367342|56367565 hsa-miR-103 0 0 1
chr20:56367342|56367565 hsa-miR-24 0 0 1
chr20:56367342|56367565 hsa-miR-614 0 1 0
chr20:56367342|56367565 hsa-miR-650 1 0 0
chr20:56367342|56367565 hsa-miR-3714 1 0 0
chr20:56367342|56367565 hsa-miR-3929 0 1 0
chr20:56367342|56367565 hsa-miR-1268b 1 0 0
chr20:56367342|56367565 hsa-miR-3689c 0 1 0
chr20:56367342|56367565 hsa-miR-4517 0 1 0
chr20:56367342|56367565 hsa-miR-4656 1 0 0
chr20:56367342|56367565 hsa-miR-4688 1 0 0
chr20:56367342|56367565 hsa-miR-5689 1 0 0
chr20:56367342|56367565 hsa-miR-5787 1 0 0
chr20:56367342|56367565 hsa-miR-6085 1 0 0
chr20:56367342|56367565 hsa-miR-6086 0 1 0
chr20:56367342|56367565 hsa-miR-8089 1 0 0
chr20:56367342|56367565 hsa-miR-6840-3p 1 0 0
chr20:56367342|56367565 hsa-miR-6765-5p 1 0 0
chr20:56367342|56367565 hsa-miR-6861-5p 1 0 0
chr20:56367342|56367565 hsa-miR-6825-5p 1 1 0
chr20:56367342|56367565 hsa-miR-1972 1 1 0
chr20:56367342|56367565 hsa-miR-6720-5p 1 0 0
chr20:56367342|56367565 hsa-miR-6799-5p 0 1 0
chr20:56367342|56367565 hsa-miR-3934-5p 0 1 0
chr20:56367342|56367565 hsa-miR-4786-5p 0 1 0
chr20:56367342|56367565 hsa-miR-6089 1 1 0
chr20:56367342|56367565 hsa-miR-3192-5p 1 1 0
chr20:56367342|56367565 hsa-miR-6727-5p 1 0 0
chr20:56367342|56367565 hsa-miR-770-5p 1 0 0
chr20:56367342|56367565 hsa-miR-6849-3p 0 1 0
chr20:56367342|56367565 hsa-miR-2467-3p 1 0 0
chr20:56367342|56367565 hsa-miR-4783-3p 1 0 0
chr20:56367342|56367565 hsa-miR-6771-5p 1 0 0
chr20:56367342|56367565 hsa-miR-103a-3p 0 1 0
chr20:56367342|56367565 hsa-miR-6824-5p 1 0 0
chr20:56367342|56367565 hsa-miR-891a-3p 0 1 0
chr20:56367342|56367565 hsa-miR-20b-3p 0 1 0
chr20:56367342|56367565 hsa-miR-1207-5p 1 0 0
chr20:56367342|56367565 hsa-miR-1233-5p 1 0 0
chr20:56367342|56367565 hsa-miR-1273h-5p 0 1 0
chr20:56367342|56367565 hsa-miR-3689b-3p 0 1 0
chr20:56367342|56367565 hsa-miR-4763-3p 1 0 0
chr20:56367342|56367565 hsa-miR-6778-5p 1 0 0
chr20:56367342|56367565 hsa-miR-6893-5p 0 1 0
chr20:56367342|56367565 hsa-miR-6756-5p 1 0 0
chr20:56367342|56367565 hsa-miR-6851-5p 1 0 0
chr20:56367342|56367565 hsa-miR-6763-5p 1 1 0
chr20:56367342|56367565 hsa-miR-6780a-5p 0 1 0
chr20:56367342|56367565 hsa-miR-4728-5p 1 0 0
chr20:56367342|56367565 hsa-miR-328-5p 1 0 0
chr20:56367342|56367565 hsa-miR-3689a-3p 0 1 0
chr20:56367342|56367565 hsa-miR-4685-5p 1 0 0
chr20:56367342|56367565 hsa-miR-4700-5p 0 1 0
chr20:56367342|56367565 hsa-miR-4667-5p 0 1 0
chr20:56367342|56367565 hsa-miR-6884-5p 0 1 0
chr20:56367342|56367565 hsa-miR-6827-3p 0 1 0
chr20:56367342|56367565 hsa-miR-6771-3p 0 1 0
chr20:56367342|56367565 hsa-miR-340-3p 0 1 0
chr20:56367342|56367565 hsa-miR-7157-5p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:56367342|56367565
ORF Type ORF1
Protein Length 73
Nucleotide Length 219
Protein Sequence MGSSNAASASPVAGTTGVCHHTRLIFVFVVETGFHHVGQAGLELLASSDTPASTSQSAGITGVSHRTWPLCSN
Nucleotide Sequence CTGGGTTCAAGCAATGCTGCCTCAGCCTCCCCAGTAGCTGGGACTACAGGCGTGTGCCACCACACCCGGCTAATTTTTGTATTTGTAGTAGAGACGGGGTTTCATCATGTTGGCCAGGCTGGTCTCGAACTCCTGGCCTCAAGTGACACGCCTGCCTCAACCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCTGGCCTCTATGCTCGAAT
CircID chr20:56367342|56367565
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MLARLVSNSWPQVTRLPQPPKVLGLQA
Nucleotide Sequence ATGTTGGCCAGGCTGGTCTCGAACTCCTGGCCTCAAGTGACACGCCTGCCTCAACCTCCCAAAGTGCTGGGATTACAGGCGTGA
CircID chr20:56367342|56367565
ORF Type ORF3
Protein Length 38
Nucleotide Length 117
Protein Sequence MRQACHLRPGVRDQPGQHDETPSLLQIQKLAGCGGTRL
Nucleotide Sequence TTGAGGCAGGCGTGTCACTTGAGGCCAGGAGTTCGAGACCAGCCTGGCCAACATGATGAAACCCCGTCTCTACTACAAATACAAAAATTAGCCGGGTGTGGTGGCACACGCCTGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab