CircRNA Information

General Information
circRNA Basic Information
CircID chr20:56367351|56367571
Strand +
CircType exon
Host Gene ENSG00000124098.9;
Algorism CIRI2;
Sequence CTCCACCTCCTGGGTTCAAGCAATGCTGCCTCAGCCTCCCCAGTAGCTGGGACTACAGGCGTGTGCCACCACACCCGGCTAATTTTTGTATTTGTAGTAGAGACGGGGTTTCATCATGTTGGCCAGGCTGGTCTCGAACTCCTGGCCTCAAGTGACACGCCTGCCTCAACCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCTGGCCTCTATG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:56367351|56367571 hsa-miR-107 0 1 1
chr20:56367351|56367571 hsa-miR-597-5p 0 0 1
chr20:56367351|56367571 hsa-miR-597-3p 0 0 1
chr20:56367351|56367571 hsa-miR-668-5p 0 0 1
chr20:56367351|56367571 hsa-miR-668-3p 0 0 1
chr20:56367351|56367571 hsa-miR-675-5p 0 0 1
chr20:56367351|56367571 hsa-miR-675-3p 0 0 1
chr20:56367351|56367571 hsa-miR-665 0 1 1
chr20:56367351|56367571 hsa-miR-939-5p 0 0 1
chr20:56367351|56367571 hsa-miR-939-3p 0 0 1
chr20:56367351|56367571 hsa-miR-940 0 0 1
chr20:56367351|56367571 hsa-miR-1304-5p 0 0 1
chr20:56367351|56367571 hsa-miR-1304-3p 0 0 1
chr20:56367351|56367571 hsa-miR-1272 0 0 1
chr20:56367351|56367571 hsa-miR-1827 0 1 1
chr20:56367351|56367571 hsa-miR-1283 0 0 1
chr20:56367351|56367571 hsa-miR-485-5p 0 0 1
chr20:56367351|56367571 hsa-miR-103 0 0 1
chr20:56367351|56367571 hsa-miR-24 0 0 1
chr20:56367351|56367571 hsa-miR-614 0 1 0
chr20:56367351|56367571 hsa-miR-650 1 0 0
chr20:56367351|56367571 hsa-miR-3714 1 0 0
chr20:56367351|56367571 hsa-miR-3929 0 1 0
chr20:56367351|56367571 hsa-miR-1268b 1 0 0
chr20:56367351|56367571 hsa-miR-4449 1 0 0
chr20:56367351|56367571 hsa-miR-3689c 0 1 0
chr20:56367351|56367571 hsa-miR-4517 0 1 0
chr20:56367351|56367571 hsa-miR-3960 1 0 0
chr20:56367351|56367571 hsa-miR-4656 1 0 0
chr20:56367351|56367571 hsa-miR-4688 1 0 0
chr20:56367351|56367571 hsa-miR-4767 1 0 0
chr20:56367351|56367571 hsa-miR-5689 1 0 0
chr20:56367351|56367571 hsa-miR-5787 1 0 0
chr20:56367351|56367571 hsa-miR-6085 1 0 0
chr20:56367351|56367571 hsa-miR-6086 0 1 0
chr20:56367351|56367571 hsa-miR-8089 1 0 0
chr20:56367351|56367571 hsa-miR-6840-3p 1 1 0
chr20:56367351|56367571 hsa-miR-6765-5p 1 0 0
chr20:56367351|56367571 hsa-miR-6861-5p 1 0 0
chr20:56367351|56367571 hsa-miR-6825-5p 1 1 0
chr20:56367351|56367571 hsa-miR-1972 1 1 0
chr20:56367351|56367571 hsa-miR-6720-5p 1 0 0
chr20:56367351|56367571 hsa-miR-6799-5p 1 1 0
chr20:56367351|56367571 hsa-miR-3934-5p 1 1 0
chr20:56367351|56367571 hsa-miR-4786-5p 0 1 0
chr20:56367351|56367571 hsa-miR-6089 1 1 0
chr20:56367351|56367571 hsa-miR-3192-5p 1 1 0
chr20:56367351|56367571 hsa-miR-7160-5p 1 0 0
chr20:56367351|56367571 hsa-miR-6727-5p 1 0 0
chr20:56367351|56367571 hsa-miR-770-5p 1 0 0
chr20:56367351|56367571 hsa-miR-6849-3p 0 1 0
chr20:56367351|56367571 hsa-miR-2467-3p 1 0 0
chr20:56367351|56367571 hsa-miR-4783-3p 1 0 0
chr20:56367351|56367571 hsa-miR-6771-5p 1 0 0
chr20:56367351|56367571 hsa-miR-4690-5p 1 0 0
chr20:56367351|56367571 hsa-miR-103a-3p 0 1 0
chr20:56367351|56367571 hsa-miR-6824-5p 1 0 0
chr20:56367351|56367571 hsa-miR-891a-3p 0 1 0
chr20:56367351|56367571 hsa-miR-20b-3p 0 1 0
chr20:56367351|56367571 hsa-miR-1207-5p 1 0 0
chr20:56367351|56367571 hsa-miR-1233-5p 1 0 0
chr20:56367351|56367571 hsa-miR-1273h-5p 1 1 0
chr20:56367351|56367571 hsa-miR-3689b-3p 0 1 0
chr20:56367351|56367571 hsa-miR-4763-3p 1 0 0
chr20:56367351|56367571 hsa-miR-6778-5p 1 0 0
chr20:56367351|56367571 hsa-miR-6893-5p 1 1 0
chr20:56367351|56367571 hsa-miR-1343-5p 1 0 0
chr20:56367351|56367571 hsa-miR-6752-5p 1 0 0
chr20:56367351|56367571 hsa-miR-6756-5p 1 0 0
chr20:56367351|56367571 hsa-miR-6851-5p 1 0 0
chr20:56367351|56367571 hsa-miR-6722-3p 1 0 0
chr20:56367351|56367571 hsa-miR-6763-5p 1 1 0
chr20:56367351|56367571 hsa-miR-6780a-5p 0 1 0
chr20:56367351|56367571 hsa-miR-6808-5p 1 0 0
chr20:56367351|56367571 hsa-miR-4728-5p 1 0 0
chr20:56367351|56367571 hsa-miR-328-5p 1 0 0
chr20:56367351|56367571 hsa-miR-3689a-3p 0 1 0
chr20:56367351|56367571 hsa-miR-4685-5p 1 0 0
chr20:56367351|56367571 hsa-miR-6848-5p 1 0 0
chr20:56367351|56367571 hsa-miR-4700-5p 1 1 0
chr20:56367351|56367571 hsa-miR-4667-5p 0 1 0
chr20:56367351|56367571 hsa-miR-6884-5p 1 1 0
chr20:56367351|56367571 hsa-miR-6827-3p 0 1 0
chr20:56367351|56367571 hsa-miR-6771-3p 0 1 0
chr20:56367351|56367571 hsa-miR-340-3p 0 1 0
chr20:56367351|56367571 hsa-miR-7157-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:56367351|56367571
ORF Type ORF1
Protein Length 70
Nucleotide Length 210
Protein Sequence MGSSNAASASPVAGTTGVCHHTRLIFVFVVETGFHHVGQAGLELLASSDTPASTSQSAGITGVSHRTWPL
Nucleotide Sequence CTGGGTTCAAGCAATGCTGCCTCAGCCTCCCCAGTAGCTGGGACTACAGGCGTGTGCCACCACACCCGGCTAATTTTTGTATTTGTAGTAGAGACGGGGTTTCATCATGTTGGCCAGGCTGGTCTCGAACTCCTGGCCTCAAGTGACACGCCTGCCTCAACCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCTGGCCTCTA
CircID chr20:56367351|56367571
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MLARLVSNSWPQVTRLPQPPKVLGLQA
Nucleotide Sequence ATGTTGGCCAGGCTGGTCTCGAACTCCTGGCCTCAAGTGACACGCCTGCCTCAACCTCCCAAAGTGCTGGGATTACAGGCGTGA
CircID chr20:56367351|56367571
ORF Type ORF3
Protein Length 38
Nucleotide Length 117
Protein Sequence MRQACHLRPGVRDQPGQHDETPSLLQIQKLAGCGGTRL
Nucleotide Sequence TTGAGGCAGGCGTGTCACTTGAGGCCAGGAGTTCGAGACCAGCCTGGCCAACATGATGAAACCCCGTCTCTACTACAAATACAAAAATTAGCCGGGTGTGGTGGCACACGCCTGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab