CircRNA Information

General Information
circRNA Basic Information
CircID chr20:57562134|57562294
Strand -
CircType exon
Host Gene ENSG00000124253.10;
Algorism CIRI2;
Sequence CCAAGAGCAAAGAGACACAGTGCCCATCCCCAAAACAGGCCTCAGCCAGCTCGGTCGCTGGATGTCAGAGGAGGATTTTGAGAAAGCGTTCAATGCCAGGTTCCCAGGGTGCATGAAAGGTGAGCGGAACATTGATTTGATTGGGTAAAACAGCAGAGAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:57562134|57562294 hsa-miR-489-5p 0 0 1
chr20:57562134|57562294 hsa-miR-489-3p 0 0 1
chr20:57562134|57562294 hsa-miR-572 1 0 1
chr20:57562134|57562294 hsa-miR-593-5p 0 0 1
chr20:57562134|57562294 hsa-miR-593-3p 0 0 1
chr20:57562134|57562294 hsa-miR-892a 0 1 1
chr20:57562134|57562294 hsa-miR-887-5p 0 0 1
chr20:57562134|57562294 hsa-miR-887-3p 0 0 1
chr20:57562134|57562294 hsa-miR-1256 1 0 1
chr20:57562134|57562294 hsa-miR-1292-5p 0 0 1
chr20:57562134|57562294 hsa-miR-1292-3p 0 0 1
chr20:57562134|57562294 hsa-miR-513c-5p 0 0 1
chr20:57562134|57562294 hsa-miR-513c-3p 0 0 1
chr20:57562134|57562294 hsa-miR-490-3p 0 0 1
chr20:57562134|57562294 hsa-miR-502-3p 0 1 1
chr20:57562134|57562294 hsa-miR-501-3p 0 1 1
chr20:57562134|57562294 hsa-miR-371-5p 0 0 1
chr20:57562134|57562294 hsa-miR-762 1 0 0
chr20:57562134|57562294 hsa-miR-2110 1 0 0
chr20:57562134|57562294 hsa-miR-2861 1 0 0
chr20:57562134|57562294 hsa-miR-4292 0 1 0
chr20:57562134|57562294 hsa-miR-4487 1 1 0
chr20:57562134|57562294 hsa-miR-4488 1 0 0
chr20:57562134|57562294 hsa-miR-4492 1 0 0
chr20:57562134|57562294 hsa-miR-4498 1 0 0
chr20:57562134|57562294 hsa-miR-4525 1 0 0
chr20:57562134|57562294 hsa-miR-4651 1 0 0
chr20:57562134|57562294 hsa-miR-4656 1 0 0
chr20:57562134|57562294 hsa-miR-5190 1 1 0
chr20:57562134|57562294 hsa-miR-5193 0 1 0
chr20:57562134|57562294 hsa-miR-5572 1 0 0
chr20:57562134|57562294 hsa-miR-5705 1 0 0
chr20:57562134|57562294 hsa-miR-5787 1 0 0
chr20:57562134|57562294 hsa-miR-7703 1 0 0
chr20:57562134|57562294 hsa-miR-8089 1 1 0
chr20:57562134|57562294 hsa-miR-6089 1 0 0
chr20:57562134|57562294 hsa-miR-7160-5p 0 1 0
chr20:57562134|57562294 hsa-miR-6820-5p 1 0 0
chr20:57562134|57562294 hsa-miR-6759-5p 1 0 0
chr20:57562134|57562294 hsa-miR-3189-5p 1 0 0
chr20:57562134|57562294 hsa-miR-185-3p 1 0 0
chr20:57562134|57562294 hsa-miR-6732-5p 1 0 0
chr20:57562134|57562294 hsa-miR-5008-5p 1 0 0
chr20:57562134|57562294 hsa-miR-204-3p 1 0 0
chr20:57562134|57562294 hsa-miR-92b-5p 1 0 0
chr20:57562134|57562294 hsa-miR-6749-5p 1 0 0
chr20:57562134|57562294 hsa-miR-6719-3p 0 1 0
chr20:57562134|57562294 hsa-miR-106b-3p 1 0 0
chr20:57562134|57562294 hsa-miR-4649-3p 0 1 0
chr20:57562134|57562294 hsa-miR-3680-3p 1 0 0
chr20:57562134|57562294 hsa-miR-4668-3p 0 1 0
chr20:57562134|57562294 hsa-miR-221-5p 0 1 0
chr20:57562134|57562294 hsa-miR-4763-3p 1 0 0
chr20:57562134|57562294 hsa-miR-6756-5p 1 0 0
chr20:57562134|57562294 hsa-miR-6803-5p 1 0 0
chr20:57562134|57562294 hsa-miR-6842-5p 1 0 0
chr20:57562134|57562294 hsa-miR-6751-5p 1 1 0
chr20:57562134|57562294 hsa-miR-4725-3p 1 0 0
chr20:57562134|57562294 hsa-miR-6848-5p 1 0 0
chr20:57562134|57562294 hsa-miR-4700-5p 1 1 0
chr20:57562134|57562294 hsa-miR-6791-5p 1 1 0
chr20:57562134|57562294 hsa-miR-6862-3p 1 0 0
chr20:57562134|57562294 hsa-miR-6805-3p 1 0 0
chr20:57562134|57562294 hsa-miR-3130-5p 1 0 0
chr20:57562134|57562294 hsa-miR-6504-5p 0 1 0
chr20:57562134|57562294 hsa-miR-616-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:57562134|57562294
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MSEEDFEKAFNARFPGCMKGERNIDLIG
Nucleotide Sequence ATGTCAGAGGAGGATTTTGAGAAAGCGTTCAATGCCAGGTTCCCAGGGTGCATGAAAGGTGAGCGGAACATTGATTTGATTGGGTAA
CircID chr20:57562134|57562294
ORF Type ORF2
Protein Length 52
Nucleotide Length 156
Protein Sequence MLFYPIKSMFRSPFMHPGNLALNAFSKSSSDIQRPSWLRPVLGMGTVSLCSW
Nucleotide Sequence CTGCTGTTTTACCCAATCAAATCAATGTTCCGCTCACCTTTCATGCACCCTGGGAACCTGGCATTGAACGCTTTCTCAAAATCCTCCTCTGACATCCAGCGACCGAGCTGGCTGAGGCCTGTTTTGGGGATGGGCACTGTGTCTCTTTGCTCTTGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab