CircRNA Information

General Information
circRNA Basic Information
CircID chr20:57648959|57649143
Strand -
CircType exon
Host Gene ENSG00000124225.14;
Algorism CIRI2;
Sequence TGGGCTTTCTGAGAACACGGACGGTTCTTAGCACAATTTGTGAAATCTGTGTAGAACCGGGCTTTGCAGGGGAGATAATTTTCCTCCTCTGGAGGAAAGGTGGTGATTGACAGGCAGGGAGACAGTGACAAGGCTAGAGAAAGCCACGCTCGGCCTTCTCTGAACCAGGATGGAACGGCAGACCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:57648959|57649143 hsa-miR-197-5p 0 0 1
chr20:57648959|57649143 hsa-miR-197-3p 0 0 1
chr20:57648959|57649143 hsa-miR-346 0 0 1
chr20:57648959|57649143 hsa-miR-527 0 0 1
chr20:57648959|57649143 hsa-miR-668-5p 0 0 1
chr20:57648959|57649143 hsa-miR-668-3p 0 0 1
chr20:57648959|57649143 hsa-miR-1238-5p 0 0 1
chr20:57648959|57649143 hsa-miR-1238-3p 0 0 1
chr20:57648959|57649143 hsa-miR-1208 0 0 1
chr20:57648959|57649143 hsa-miR-1251-5p 0 0 1
chr20:57648959|57649143 hsa-miR-1251-3p 0 0 1
chr20:57648959|57649143 hsa-miR-513b-5p 0 0 1
chr20:57648959|57649143 hsa-miR-513b-3p 0 0 1
chr20:57648959|57649143 hsa-miR-525-5p 0 1 1
chr20:57648959|57649143 hsa-miR-671-3p 0 1 1
chr20:57648959|57649143 hsa-miR-331-3p 0 0 1
chr20:57648959|57649143 hsa-miR-520a-5p 0 1 1
chr20:57648959|57649143 hsa-miR-518a-5p 0 0 1
chr20:57648959|57649143 hsa-miR-548b-3p 0 0 1
chr20:57648959|57649143 hsa-miR-220b 0 0 1
chr20:57648959|57649143 hsa-miR-218 0 0 1
chr20:57648959|57649143 hsa-miR-623 0 1 0
chr20:57648959|57649143 hsa-miR-644a 0 1 0
chr20:57648959|57649143 hsa-miR-4312 1 1 0
chr20:57648959|57649143 hsa-miR-3655 1 0 0
chr20:57648959|57649143 hsa-miR-4521 0 1 0
chr20:57648959|57649143 hsa-miR-4686 1 0 0
chr20:57648959|57649143 hsa-miR-4741 1 0 0
chr20:57648959|57649143 hsa-miR-214-5p 0 1 0
chr20:57648959|57649143 hsa-miR-6747-3p 0 1 0
chr20:57648959|57649143 hsa-miR-149-5p 1 0 0
chr20:57648959|57649143 hsa-miR-6875-3p 1 0 0
chr20:57648959|57649143 hsa-miR-6873-3p 0 1 0
chr20:57648959|57649143 hsa-miR-6849-3p 1 0 0
chr20:57648959|57649143 hsa-miR-659-3p 0 1 0
chr20:57648959|57649143 hsa-miR-6770-5p 0 1 0
chr20:57648959|57649143 hsa-miR-6882-3p 1 0 0
chr20:57648959|57649143 hsa-miR-615-3p 1 0 0
chr20:57648959|57649143 hsa-miR-6884-3p 1 0 0
chr20:57648959|57649143 hsa-miR-4793-5p 0 1 0
chr20:57648959|57649143 hsa-miR-6894-3p 1 0 0
chr20:57648959|57649143 hsa-miR-6514-3p 1 1 0
chr20:57648959|57649143 hsa-miR-5001-3p 1 0 0
chr20:57648959|57649143 hsa-miR-7113-3p 1 1 0
chr20:57648959|57649143 hsa-miR-3191-5p 1 0 0
chr20:57648959|57649143 hsa-miR-7106-3p 1 0 0
chr20:57648959|57649143 hsa-miR-6752-3p 1 0 0
chr20:57648959|57649143 hsa-miR-3160-5p 0 1 0
chr20:57648959|57649143 hsa-miR-6773-3p 1 0 0
chr20:57648959|57649143 hsa-miR-6760-3p 1 1 0
chr20:57648959|57649143 hsa-miR-597-5p 1 0 0
chr20:57648959|57649143 hsa-miR-3173-5p 1 0 0
chr20:57648959|57649143 hsa-miR-6842-5p 1 0 0
chr20:57648959|57649143 hsa-miR-6753-3p 1 1 0
chr20:57648959|57649143 hsa-miR-7107-3p 1 1 0
chr20:57648959|57649143 hsa-miR-4722-3p 1 0 0
chr20:57648959|57649143 hsa-miR-6727-3p 1 0 0
chr20:57648959|57649143 hsa-miR-6775-3p 1 0 0
chr20:57648959|57649143 hsa-miR-4691-5p 0 1 0
chr20:57648959|57649143 hsa-miR-6503-5p 1 1 0
chr20:57648959|57649143 hsa-miR-6766-3p 1 0 0
chr20:57648959|57649143 hsa-miR-3922-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr20:57648959|57649143
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence MRTRTVLSTICEICVEPGFAGEIIFLLWRKGGD
Nucleotide Sequence CTGAGAACACGGACGGTTCTTAGCACAATTTGTGAAATCTGTGTAGAACCGGGCTTTGCAGGGGAGATAATTTTCCTCCTCTGGAGGAAAGGTGGTGATTGA

CircID chr20:57648959|57649143
ORF Type ORF2
Protein Length 43
Nucleotide Length 129
Protein Sequence MSLSPCLSITTFPPEEENYLPCKARFYTDFTNCAKNRPCSQKA
Nucleotide Sequence TTGTCACTGTCTCCCTGCCTGTCAATCACCACCTTTCCTCCAGAGGAGGAAAATTATCTCCCCTGCAAAGCCCGGTTCTACACAGATTTCACAAATTGTGCTAAGAACCGTCCGTGTTCTCAGAAAGCC

CircID chr20:57648959|57649143
ORF Type ORF3
Protein Length 46
Nucleotide Length 141
Protein Sequence MVQRRPSVAFSSLVTVSLPVNHHLSSRGGKLSPLQSPVLHRFHKLC
Nucleotide Sequence CTGGTTCAGAGAAGGCCGAGCGTGGCTTTCTCTAGCCTTGTCACTGTCTCCCTGCCTGTCAATCACCACCTTTCCTCCAGAGGAGGAAAATTATCTCCCCTGCAAAGCCCGGTTCTACACAGATTTCACAAATTGTGCTAA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites