CircRNA Information

General Information
circRNA Basic Information
CircID chr20:57711436|57711660
Strand -
CircType exon
Host Gene ENSG00000124225.14;
Algorism CIRI2;
Sequence CAGGAGGCTTGTTCTGGAGAAGTCAAGCCCAGGGATGTGGCTCAGGCTGGTCCAAGCTCTTTGGAGGAGTCCAAGCGTGCCCAGCCCAGAGGGAGGTTCAGAGGCACTGACCGTCTTCTGTTTGGGAGGAGAAGCTCACTCTTGGAGCCACAGCCAGCACTAGGTCAGGACCCAGGCCCCGGCCCAGGAGTGGGGCAATACCCAGCGTCTACCCCAGATGGCACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:57711436|57711660 hsa-miR-192-5p 0 0 1
chr20:57711436|57711660 hsa-miR-192-3p 0 0 1
chr20:57711436|57711660 hsa-miR-148a-5p 0 0 1
chr20:57711436|57711660 hsa-miR-148a-3p 0 0 1
chr20:57711436|57711660 hsa-miR-215-5p 0 0 1
chr20:57711436|57711660 hsa-miR-215-3p 0 0 1
chr20:57711436|57711660 hsa-miR-152-5p 0 0 1
chr20:57711436|57711660 hsa-miR-152-3p 0 0 1
chr20:57711436|57711660 hsa-miR-150-5p 0 0 1
chr20:57711436|57711660 hsa-miR-150-3p 0 0 1
chr20:57711436|57711660 hsa-miR-379-5p 0 0 1
chr20:57711436|57711660 hsa-miR-379-3p 0 0 1
chr20:57711436|57711660 hsa-miR-326 0 0 1
chr20:57711436|57711660 hsa-miR-148b-5p 0 0 1
chr20:57711436|57711660 hsa-miR-148b-3p 0 0 1
chr20:57711436|57711660 hsa-miR-519e-5p 0 0 1
chr20:57711436|57711660 hsa-miR-519e-3p 0 0 1
chr20:57711436|57711660 hsa-miR-520f-5p 0 0 1
chr20:57711436|57711660 hsa-miR-520f-3p 0 0 1
chr20:57711436|57711660 hsa-miR-612 0 1 1
chr20:57711436|57711660 hsa-miR-617 0 0 1
chr20:57711436|57711660 hsa-miR-637 0 0 1
chr20:57711436|57711660 hsa-miR-661 1 1 1
chr20:57711436|57711660 hsa-miR-766-5p 0 0 1
chr20:57711436|57711660 hsa-miR-766-3p 0 0 1
chr20:57711436|57711660 hsa-miR-1276 0 0 1
chr20:57711436|57711660 hsa-miR-512-3p 0 0 1
chr20:57711436|57711660 hsa-miR-483-3p 0 0 1
chr20:57711436|57711660 hsa-miR-330-5p 0 1 1
chr20:57711436|57711660 hsa-miR-515-3p 0 0 1
chr20:57711436|57711660 hsa-miR-515-5p 0 0 1
chr20:57711436|57711660 hsa-miR-642 0 0 1
chr20:57711436|57711660 hsa-miR-1269 0 0 1
chr20:57711436|57711660 hsa-miR-1285 0 0 1
chr20:57711436|57711660 hsa-miR-608 1 1 0
chr20:57711436|57711660 hsa-miR-762 1 1 0
chr20:57711436|57711660 hsa-miR-1538 1 0 0
chr20:57711436|57711660 hsa-miR-2861 1 0 0
chr20:57711436|57711660 hsa-miR-4279 0 1 0
chr20:57711436|57711660 hsa-miR-4286 0 1 0
chr20:57711436|57711660 hsa-miR-4292 0 1 0
chr20:57711436|57711660 hsa-miR-378g 0 1 0
chr20:57711436|57711660 hsa-miR-4469 0 1 0
chr20:57711436|57711660 hsa-miR-4473 0 1 0
chr20:57711436|57711660 hsa-miR-3689f 1 0 0
chr20:57711436|57711660 hsa-miR-4492 0 1 0
chr20:57711436|57711660 hsa-miR-1587 0 1 0
chr20:57711436|57711660 hsa-miR-4538 1 1 0
chr20:57711436|57711660 hsa-miR-5681b 0 1 0
chr20:57711436|57711660 hsa-miR-5787 0 1 0
chr20:57711436|57711660 hsa-miR-6080 0 1 0
chr20:57711436|57711660 hsa-miR-7974 0 1 0
chr20:57711436|57711660 hsa-miR-146a-3p 0 1 0
chr20:57711436|57711660 hsa-miR-6861-5p 1 1 0
chr20:57711436|57711660 hsa-miR-4474-3p 0 1 0
chr20:57711436|57711660 hsa-miR-5589-5p 0 1 0
chr20:57711436|57711660 hsa-miR-6849-3p 0 1 0
chr20:57711436|57711660 hsa-miR-6793-5p 1 0 0
chr20:57711436|57711660 hsa-miR-4697-3p 0 1 0
chr20:57711436|57711660 hsa-miR-6815-3p 0 1 0
chr20:57711436|57711660 hsa-miR-939-3p 0 1 0
chr20:57711436|57711660 hsa-miR-6784-5p 0 1 0
chr20:57711436|57711660 hsa-miR-4640-5p 1 0 0
chr20:57711436|57711660 hsa-miR-6749-5p 1 0 0
chr20:57711436|57711660 hsa-miR-6742-3p 0 1 0
chr20:57711436|57711660 hsa-miR-6781-5p 0 1 0
chr20:57711436|57711660 hsa-miR-4776-5p 0 1 0
chr20:57711436|57711660 hsa-miR-4776-3p 1 0 0
chr20:57711436|57711660 hsa-miR-519d-5p 0 1 0
chr20:57711436|57711660 hsa-miR-503-3p 0 1 0
chr20:57711436|57711660 hsa-miR-6775-5p 1 0 0
chr20:57711436|57711660 hsa-miR-3620-5p 1 1 0
chr20:57711436|57711660 hsa-miR-5189-5p 0 1 0
chr20:57711436|57711660 hsa-miR-10392-5p 1 0 0
chr20:57711436|57711660 hsa-miR-1909-3p 1 0 0
chr20:57711436|57711660 hsa-miR-6848-5p 1 0 0
chr20:57711436|57711660 hsa-miR-3187-5p 0 1 0
chr20:57711436|57711660 hsa-miR-3085-5p 0 1 0
chr20:57711436|57711660 hsa-miR-6791-5p 0 1 0
chr20:57711436|57711660 hsa-miR-6762-5p 1 0 0
chr20:57711436|57711660 hsa-miR-3529-5p 0 1 0
chr20:57711436|57711660 hsa-miR-6792-3p 0 1 0
chr20:57711436|57711660 hsa-miR-5009-5p 0 1 0
chr20:57711436|57711660 hsa-miR-6751-3p 0 1 0
chr20:57711436|57711660 hsa-miR-3085-3p 0 1 0
chr20:57711436|57711660 hsa-miR-6783-3p 0 1 0
chr20:57711436|57711660 hsa-miR-4691-5p 1 0 0
chr20:57711436|57711660 hsa-miR-6504-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:57711436|57711660
ORF Type ORF1
Protein Length 55
Nucleotide Length 165
Protein Sequence MEESKRAQPRGRFRGTDRLLFGRRSSLLEPQPALGQDPGPGPGVGQYPASTPDGT
Nucleotide Sequence TTGGAGGAGTCCAAGCGTGCCCAGCCCAGAGGGAGGTTCAGAGGCACTGACCGTCTTCTGTTTGGGAGGAGAAGCTCACTCTTGGAGCCACAGCCAGCACTAGGTCAGGACCCAGGCCCCGGCCCAGGAGTGGGGCAATACCCAGCGTCTACCCCAGATGGCACC
CircID chr20:57711436|57711660
ORF Type ORF2
Protein Length 49
Nucleotide Length 150
Protein Sequence MEKSSPGMWLRLVQALWRSPSVPSPEGGSEALTVFCLGGEAHSWSHSQH
Nucleotide Sequence CTGGAGAAGTCAAGCCCAGGGATGTGGCTCAGGCTGGTCCAAGCTCTTTGGAGGAGTCCAAGCGTGCCCAGCCCAGAGGGAGGTTCAGAGGCACTGACCGTCTTCTGTTTGGGAGGAGAAGCTCACTCTTGGAGCCACAGCCAGCACTAG
CircID chr20:57711436|57711660
ORF Type ORF3
Protein Length 33
Nucleotide Length 102
Protein Sequence MFWRSQAQGCGSGWSKLFGGVQACPAQREVQRH
Nucleotide Sequence TTGTTCTGGAGAAGTCAAGCCCAGGGATGTGGCTCAGGCTGGTCCAAGCTCTTTGGAGGAGTCCAAGCGTGCCCAGCCCAGAGGGAGGTTCAGAGGCACTGA
CircID chr20:57711436|57711660
ORF Type ORF4
Protein Length 28
Nucleotide Length 84
Protein Sequence MGTLGLLQRAWTSLSHIPGLDFSRTSLL
Nucleotide Sequence CTGGGCACGCTTGGACTCCTCCAAAGAGCTTGGACCAGCCTGAGCCACATCCCTGGGCTTGACTTCTCCAGAACAAGCCTCCTG
CircID chr20:57711436|57711660
ORF Type ORF5
Protein Length 35
Nucleotide Length 108
Protein Sequence MGIAPLLGRGLGPDLVLAVAPRVSFSSQTEDGQCL
Nucleotide Sequence CTGGGTATTGCCCCACTCCTGGGCCGGGGCCTGGGTCCTGACCTAGTGCTGGCTGTGGCTCCAAGAGTGAGCTTCTCCTCCCAAACAGAAGACGGTCAGTGCCTCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab