CircRNA Information

General Information
circRNA Basic Information
CircID chr20:58691511|58691793
Strand +
CircType exon
Host Gene ENSG00000254995.4;
Algorism CIRI2;
Sequence CCTCCTCTGTTACCTCCATGTAGTTCCATAAGCCACTCCTGTTATTTTGAGTTTCTTCTTCATAACCAGCCTAAAAATGAAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAAAAGAAAAAAAAGCACTGTCAACTCCCTGGCGTGGTGTGAGAGGTTTTCCACCACTGACCTCCCAGCTGGCCCCCTAGCTCCCTAACTTGTAGCCCCGGGAGCCACAAGCCAGGCTTTCACCTTCCCTGTCCACAGGCTCCAGGTCTGTCTGCTCAGCTCTGAGCCATGGTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:58691511|58691793 hsa-miR-520f-5p 0 0 1
chr20:58691511|58691793 hsa-miR-520f-3p 0 0 1
chr20:58691511|58691793 hsa-miR-579-5p 0 0 1
chr20:58691511|58691793 hsa-miR-579-3p 0 0 1
chr20:58691511|58691793 hsa-miR-591 0 0 1
chr20:58691511|58691793 hsa-miR-619-5p 0 0 1
chr20:58691511|58691793 hsa-miR-619-3p 0 0 1
chr20:58691511|58691793 hsa-miR-631 0 0 1
chr20:58691511|58691793 hsa-miR-888-5p 0 0 1
chr20:58691511|58691793 hsa-miR-888-3p 0 0 1
chr20:58691511|58691793 hsa-miR-920 0 1 1
chr20:58691511|58691793 hsa-miR-1228-5p 0 0 1
chr20:58691511|58691793 hsa-miR-1228-3p 0 0 1
chr20:58691511|58691793 hsa-miR-1321 0 0 1
chr20:58691511|58691793 hsa-miR-1324 0 0 1
chr20:58691511|58691793 hsa-miR-1207-3p 0 0 1
chr20:58691511|58691793 hsa-miR-342-3p 0 0 1
chr20:58691511|58691793 hsa-miR-24 0 0 1
chr20:58691511|58691793 hsa-miR-220a 0 0 1
chr20:58691511|58691793 hsa-miR-219-1-3p 0 0 1
chr20:58691511|58691793 hsa-miR-194 0 0 1
chr20:58691511|58691793 hsa-miR-596 1 0 0
chr20:58691511|58691793 hsa-miR-608 1 0 0
chr20:58691511|58691793 hsa-miR-612 1 0 0
chr20:58691511|58691793 hsa-miR-762 1 0 0
chr20:58691511|58691793 hsa-miR-933 1 0 0
chr20:58691511|58691793 hsa-miR-1202 1 0 0
chr20:58691511|58691793 hsa-miR-1268a 1 0 0
chr20:58691511|58691793 hsa-miR-3138 1 1 0
chr20:58691511|58691793 hsa-miR-3196 1 0 0
chr20:58691511|58691793 hsa-miR-4259 1 1 0
chr20:58691511|58691793 hsa-miR-4270 0 1 0
chr20:58691511|58691793 hsa-miR-4281 1 0 0
chr20:58691511|58691793 hsa-miR-3611 0 1 0
chr20:58691511|58691793 hsa-miR-3652 1 0 0
chr20:58691511|58691793 hsa-miR-3661 1 1 0
chr20:58691511|58691793 hsa-miR-1268b 1 0 0
chr20:58691511|58691793 hsa-miR-4449 1 1 0
chr20:58691511|58691793 hsa-miR-4462 1 0 0
chr20:58691511|58691793 hsa-miR-4496 0 1 0
chr20:58691511|58691793 hsa-miR-1587 1 0 0
chr20:58691511|58691793 hsa-miR-4651 1 0 0
chr20:58691511|58691793 hsa-miR-4656 1 0 0
chr20:58691511|58691793 hsa-miR-4663 0 1 0
chr20:58691511|58691793 hsa-miR-4706 1 0 0
chr20:58691511|58691793 hsa-miR-4739 1 0 0
chr20:58691511|58691793 hsa-miR-5194 1 0 0
chr20:58691511|58691793 hsa-miR-5572 1 0 0
chr20:58691511|58691793 hsa-miR-5698 1 0 0
chr20:58691511|58691793 hsa-miR-5787 1 0 0
chr20:58691511|58691793 hsa-miR-6090 1 0 0
chr20:58691511|58691793 hsa-miR-6129 1 0 0
chr20:58691511|58691793 hsa-miR-6165 1 0 0
chr20:58691511|58691793 hsa-miR-6860 1 0 0
chr20:58691511|58691793 hsa-miR-8089 1 0 0
chr20:58691511|58691793 hsa-miR-9500 0 1 0
chr20:58691511|58691793 hsa-miR-135a-3p 1 0 0
chr20:58691511|58691793 hsa-miR-4433b-3p 1 1 0
chr20:58691511|58691793 hsa-miR-4433a-3p 1 1 0
chr20:58691511|58691793 hsa-miR-6825-5p 1 0 0
chr20:58691511|58691793 hsa-miR-125a-3p 1 0 0
chr20:58691511|58691793 hsa-miR-6799-5p 1 0 0
chr20:58691511|58691793 hsa-miR-6833-5p 1 0 0
chr20:58691511|58691793 hsa-miR-7114-5p 0 1 0
chr20:58691511|58691793 hsa-miR-6089 1 0 0
chr20:58691511|58691793 hsa-miR-3192-5p 0 1 0
chr20:58691511|58691793 hsa-miR-4653-3p 1 0 0
chr20:58691511|58691793 hsa-miR-4722-5p 1 0 0
chr20:58691511|58691793 hsa-miR-24-3p 0 1 0
chr20:58691511|58691793 hsa-miR-6727-5p 1 0 0
chr20:58691511|58691793 hsa-miR-6721-5p 1 0 0
chr20:58691511|58691793 hsa-miR-6793-5p 1 0 0
chr20:58691511|58691793 hsa-miR-6829-5p 1 0 0
chr20:58691511|58691793 hsa-miR-6732-5p 1 0 0
chr20:58691511|58691793 hsa-miR-6805-5p 1 1 0
chr20:58691511|58691793 hsa-miR-6760-5p 1 0 0
chr20:58691511|58691793 hsa-miR-6782-5p 1 0 0
chr20:58691511|58691793 hsa-miR-6810-5p 1 0 0
chr20:58691511|58691793 hsa-miR-6735-3p 1 0 0
chr20:58691511|58691793 hsa-miR-6852-5p 1 1 0
chr20:58691511|58691793 hsa-miR-6835-5p 1 0 0
chr20:58691511|58691793 hsa-miR-1226-5p 1 0 0
chr20:58691511|58691793 hsa-miR-4738-3p 1 0 0
chr20:58691511|58691793 hsa-miR-6784-5p 1 1 0
chr20:58691511|58691793 hsa-miR-4640-5p 1 1 0
chr20:58691511|58691793 hsa-miR-3127-5p 1 0 0
chr20:58691511|58691793 hsa-miR-4690-5p 1 0 0
chr20:58691511|58691793 hsa-miR-6823-5p 1 0 0
chr20:58691511|58691793 hsa-miR-6749-5p 1 0 0
chr20:58691511|58691793 hsa-miR-3160-3p 0 1 0
chr20:58691511|58691793 hsa-miR-4446-3p 1 0 0
chr20:58691511|58691793 hsa-miR-149-3p 1 0 0
chr20:58691511|58691793 hsa-miR-6824-5p 1 0 0
chr20:58691511|58691793 hsa-miR-3162-5p 1 1 0
chr20:58691511|58691793 hsa-miR-5010-5p 1 0 0
chr20:58691511|58691793 hsa-miR-4800-5p 1 0 0
chr20:58691511|58691793 hsa-miR-7112-5p 1 0 0
chr20:58691511|58691793 hsa-miR-664b-5p 1 0 0
chr20:58691511|58691793 hsa-miR-744-5p 1 0 0
chr20:58691511|58691793 hsa-miR-7113-5p 1 1 0
chr20:58691511|58691793 hsa-miR-6800-3p 0 1 0
chr20:58691511|58691793 hsa-miR-4802-5p 0 1 0
chr20:58691511|58691793 hsa-miR-1207-5p 1 1 0
chr20:58691511|58691793 hsa-miR-1273h-5p 0 1 0
chr20:58691511|58691793 hsa-miR-4763-3p 1 0 0
chr20:58691511|58691793 hsa-miR-6769b-5p 1 0 0
chr20:58691511|58691793 hsa-miR-6775-5p 1 0 0
chr20:58691511|58691793 hsa-miR-1343-5p 1 0 0
chr20:58691511|58691793 hsa-miR-5001-5p 1 0 0
chr20:58691511|58691793 hsa-miR-6726-5p 1 1 0
chr20:58691511|58691793 hsa-miR-6737-5p 1 0 0
chr20:58691511|58691793 hsa-miR-6754-5p 1 1 0
chr20:58691511|58691793 hsa-miR-6819-5p 1 0 0
chr20:58691511|58691793 hsa-miR-6851-5p 1 0 0
chr20:58691511|58691793 hsa-miR-7107-5p 1 0 0
chr20:58691511|58691793 hsa-miR-6763-5p 1 0 0
chr20:58691511|58691793 hsa-miR-6779-5p 1 0 0
chr20:58691511|58691793 hsa-miR-6780a-5p 0 1 0
chr20:58691511|58691793 hsa-miR-6808-5p 1 0 0
chr20:58691511|58691793 hsa-miR-6879-5p 1 1 0
chr20:58691511|58691793 hsa-miR-3620-5p 1 0 0
chr20:58691511|58691793 hsa-miR-5189-5p 1 0 0
chr20:58691511|58691793 hsa-miR-5196-5p 0 1 0
chr20:58691511|58691793 hsa-miR-6780b-5p 1 0 0
chr20:58691511|58691793 hsa-miR-328-5p 1 0 0
chr20:58691511|58691793 hsa-miR-4649-5p 1 0 0
chr20:58691511|58691793 hsa-miR-4685-5p 1 0 0
chr20:58691511|58691793 hsa-miR-6729-5p 1 0 0
chr20:58691511|58691793 hsa-miR-6777-5p 1 1 0
chr20:58691511|58691793 hsa-miR-6794-5p 1 0 0
chr20:58691511|58691793 hsa-miR-6846-5p 1 0 0
chr20:58691511|58691793 hsa-miR-6848-5p 1 1 0
chr20:58691511|58691793 hsa-miR-6883-5p 1 0 0
chr20:58691511|58691793 hsa-miR-6887-5p 1 0 0
chr20:58691511|58691793 hsa-miR-3187-5p 1 0 0
chr20:58691511|58691793 hsa-miR-939-5p 1 1 0
chr20:58691511|58691793 hsa-miR-4633-3p 0 1 0
chr20:58691511|58691793 hsa-miR-6511a-5p 1 0 0
chr20:58691511|58691793 hsa-miR-6511b-5p 1 0 0
chr20:58691511|58691793 hsa-miR-4747-5p 1 1 0
chr20:58691511|58691793 hsa-miR-6849-5p 1 0 0
chr20:58691511|58691793 hsa-miR-6791-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr20:58691511|58691793
ORF Type ORF1
Protein Length 47
Nucleotide Length 144
Protein Sequence MLPPCSSISHSCYFEFLLHNQPKNEKKKKKKRKEKKKKKHCQLPGVV
Nucleotide Sequence CTGTTACCTCCATGTAGTTCCATAAGCCACTCCTGTTATTTTGAGTTTCTTCTTCATAACCAGCCTAAAAATGAAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAAAAGAAAAAAAAGCACTGTCAACTCCCTGGCGTGGTGTGA
CircID chr20:58691511|58691793
ORF Type ORF2
Protein Length 49
Nucleotide Length 150
Protein Sequence MSFFFITSLKMKKKKKKKEKKKRKKSTVNSLAWCERFSTTDLPAGPLAP
Nucleotide Sequence TTGAGTTTCTTCTTCATAACCAGCCTAAAAATGAAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAAAAGAAAAAAAAGCACTGTCAACTCCCTGGCGTGGTGTGAGAGGTTTTCCACCACTGACCTCCCAGCTGGCCCCCTAGCTCCCTAA
CircID chr20:58691511|58691793
ORF Type ORF3
Protein Length 40
Nucleotide Length 123
Protein Sequence MTVLFFLFFFSFFFFFFFIFRLVMKKKLKITGVAYGTTWR
Nucleotide Sequence TTGACAGTGCTTTTTTTTCTTTTTTTCTTTTCTTTTTTTTTTTTTTTTTTTTTCATTTTTAGGCTGGTTATGAAGAAGAAACTCAAAATAACAGGAGTGGCTTATGGAACTACATGGAGGTAA
CircID chr20:58691511|58691793
ORF Type ORF4
Protein Length 29
Nucleotide Length 90
Protein Sequence MWLPGLQVRELGGQLGGQWWKTSHTTPGS
Nucleotide Sequence TTGTGGCTCCCGGGGCTACAAGTTAGGGAGCTAGGGGGCCAGCTGGGAGGTCAGTGGTGGAAAACCTCTCACACCACGCCAGGGAGTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab