CircRNA Information

General Information
circRNA Basic Information
CircID chr20:58903531|58903756
Strand +
CircType exon
Host Gene ENSG00000087460.22;
Algorism CIRI2;
Sequence TCAGGATGTAGTCCACTCTGAACTGGTTCTCGGGGTTGGCCAGCTCCACGGGGGGCACCAGGTTGCTCATGGCGGCCACAATGGTCTGAAAATGATTTAGCAAAGCGGTCAGGGAACAGCACTGGCTGGGAGGGCGCTACAAGACAGACAGCACAAGGAGCCAGCACGTACTTCAATCGCCTCTTTCAGGTTGTTTTTGATGTCCTGCACTTTGGTTGCCTTCTCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:58903531|58903756 hsa-miR-17-5p 0 0 1
chr20:58903531|58903756 hsa-miR-17-3p 0 0 1
chr20:58903531|58903756 hsa-miR-20a-5p 0 0 1
chr20:58903531|58903756 hsa-miR-20a-3p 0 0 1
chr20:58903531|58903756 hsa-miR-93-5p 0 0 1
chr20:58903531|58903756 hsa-miR-93-3p 0 0 1
chr20:58903531|58903756 hsa-miR-106a-5p 0 0 1
chr20:58903531|58903756 hsa-miR-106a-3p 0 0 1
chr20:58903531|58903756 hsa-miR-149-5p 0 0 1
chr20:58903531|58903756 hsa-miR-149-3p 0 0 1
chr20:58903531|58903756 hsa-miR-106b-5p 0 0 1
chr20:58903531|58903756 hsa-miR-106b-3p 0 0 1
chr20:58903531|58903756 hsa-miR-20b-5p 0 0 1
chr20:58903531|58903756 hsa-miR-20b-3p 0 0 1
chr20:58903531|58903756 hsa-miR-431-5p 0 0 1
chr20:58903531|58903756 hsa-miR-431-3p 0 0 1
chr20:58903531|58903756 hsa-miR-519d-5p 0 0 1
chr20:58903531|58903756 hsa-miR-519d-3p 0 0 1
chr20:58903531|58903756 hsa-miR-520g-5p 0 0 1
chr20:58903531|58903756 hsa-miR-520g-3p 0 0 1
chr20:58903531|58903756 hsa-miR-520h 0 0 1
chr20:58903531|58903756 hsa-miR-573 0 0 1
chr20:58903531|58903756 hsa-miR-575 0 0 1
chr20:58903531|58903756 hsa-miR-583 0 0 1
chr20:58903531|58903756 hsa-miR-589-5p 0 0 1
chr20:58903531|58903756 hsa-miR-589-3p 0 0 1
chr20:58903531|58903756 hsa-miR-626 0 0 1
chr20:58903531|58903756 hsa-miR-643 0 0 1
chr20:58903531|58903756 hsa-miR-663b 0 0 1
chr20:58903531|58903756 hsa-miR-1286 0 1 1
chr20:58903531|58903756 hsa-miR-1253 0 0 1
chr20:58903531|58903756 hsa-miR-1825 0 0 1
chr20:58903531|58903756 hsa-miR-512-3p 0 0 1
chr20:58903531|58903756 hsa-miR-490-3p 0 1 1
chr20:58903531|58903756 hsa-miR-125a-5p 0 0 1
chr20:58903531|58903756 hsa-miR-519b-3p 0 0 1
chr20:58903531|58903756 hsa-miR-519c-3p 0 0 1
chr20:58903531|58903756 hsa-miR-1274a 0 0 1
chr20:58903531|58903756 hsa-miR-125b 0 0 1
chr20:58903531|58903756 hsa-miR-1300 0 0 1
chr20:58903531|58903756 hsa-miR-218 0 0 1
chr20:58903531|58903756 hsa-miR-519a 0 0 1
chr20:58903531|58903756 hsa-miR-636 1 0 0
chr20:58903531|58903756 hsa-miR-759 0 1 0
chr20:58903531|58903756 hsa-miR-892b 1 0 0
chr20:58903531|58903756 hsa-miR-3185 1 0 0
chr20:58903531|58903756 hsa-miR-4268 1 0 0
chr20:58903531|58903756 hsa-miR-3907 1 0 0
chr20:58903531|58903756 hsa-miR-4436a 0 1 0
chr20:58903531|58903756 hsa-miR-4487 0 1 0
chr20:58903531|58903756 hsa-miR-4526 1 0 0
chr20:58903531|58903756 hsa-miR-3972 1 0 0
chr20:58903531|58903756 hsa-miR-7977 0 1 0
chr20:58903531|58903756 hsa-miR-8053 0 1 0
chr20:58903531|58903756 hsa-miR-8070 1 0 0
chr20:58903531|58903756 hsa-miR-12115 1 0 0
chr20:58903531|58903756 hsa-miR-1247-3p 0 1 0
chr20:58903531|58903756 hsa-miR-6836-3p 1 0 0
chr20:58903531|58903756 hsa-miR-4474-3p 0 1 0
chr20:58903531|58903756 hsa-miR-7108-5p 1 1 0
chr20:58903531|58903756 hsa-miR-6868-3p 1 0 0
chr20:58903531|58903756 hsa-miR-6770-5p 0 1 0
chr20:58903531|58903756 hsa-miR-6874-5p 0 1 0
chr20:58903531|58903756 hsa-miR-6882-3p 1 0 0
chr20:58903531|58903756 hsa-miR-1226-5p 1 0 0
chr20:58903531|58903756 hsa-miR-1908-3p 1 0 0
chr20:58903531|58903756 hsa-miR-5580-5p 0 1 0
chr20:58903531|58903756 hsa-miR-3190-5p 0 1 0
chr20:58903531|58903756 hsa-miR-5000-5p 0 1 0
chr20:58903531|58903756 hsa-miR-4732-3p 0 1 0
chr20:58903531|58903756 hsa-miR-1910-5p 1 0 0
chr20:58903531|58903756 hsa-miR-5189-3p 1 1 0
chr20:58903531|58903756 hsa-miR-4766-5p 0 1 0
chr20:58903531|58903756 hsa-miR-6851-3p 1 0 0
chr20:58903531|58903756 hsa-miR-371b-3p 1 0 0
chr20:58903531|58903756 hsa-miR-7158-5p 1 0 0
chr20:58903531|58903756 hsa-miR-5585-5p 0 1 0
chr20:58903531|58903756 hsa-miR-3913-3p 0 1 0
chr20:58903531|58903756 hsa-miR-3085-5p 1 0 0
chr20:58903531|58903756 hsa-miR-6856-5p 1 0 0
chr20:58903531|58903756 hsa-miR-3085-3p 1 0 0
chr20:58903531|58903756 hsa-miR-6817-5p 0 1 0
chr20:58903531|58903756 hsa-miR-4676-5p 0 1 0
chr20:58903531|58903756 hsa-miR-6876-3p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr20:58903531|58903756
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MVLGVGQLHGGHQVAHGGHNGLKMI
Nucleotide Sequence CTGGTTCTCGGGGTTGGCCAGCTCCACGGGGGGCACCAGGTTGCTCATGGCGGCCACAATGGTCTGAAAATGATTTAG

CircID chr20:58903531|58903756
ORF Type ORF2
Protein Length 35
Nucleotide Length 105
Protein Sequence MAGRALQDRQHKEPARTSIASFRLFLMSCTLVAFS
Nucleotide Sequence CTGGCTGGGAGGGCGCTACAAGACAGACAGCACAAGGAGCCAGCACGTACTTCAATCGCCTCTTTCAGGTTGTTTTTGATGTCCTGCACTTTGGTTGCCTTCTCA

CircID chr20:58903531|58903756
ORF Type ORF3
Protein Length 37
Nucleotide Length 111
Protein Sequence MTALLNHFQTIVAAMSNLVPPVELANPENQFRVDYIL
Nucleotide Sequence CTGACCGCTTTGCTAAATCATTTTCAGACCATTGTGGCCGCCATGAGCAACCTGGTGCCCCCCGTGGAGCTGGCCAACCCCGAGAACCAGTTCAGAGTGGACTACATCCTG

CircID chr20:58903531|58903756
ORF Type ORF4
Protein Length 26
Nucleotide Length 81
Protein Sequence MKEAIEVRAGSLCCLSCSALPASAVP
Nucleotide Sequence CTGAAAGAGGCGATTGAAGTACGTGCTGGCTCCTTGTGCTGTCTGTCTTGTAGCGCCCTCCCAGCCAGTGCTGTTCCCTGA

CircID chr20:58903531|58903756
ORF Type ORF5
Protein Length 58
Nucleotide Length 174
Protein Sequence MKYVLAPCAVCLVAPSQPVLFPDRFAKSFSDHCGRHEQPGAPRGAGQPREPVQSGLHP
Nucleotide Sequence TTGAAGTACGTGCTGGCTCCTTGTGCTGTCTGTCTTGTAGCGCCCTCCCAGCCAGTGCTGTTCCCTGACCGCTTTGCTAAATCATTTTCAGACCATTGTGGCCGCCATGAGCAACCTGGTGCCCCCCGTGGAGCTGGCCAACCCCGAGAACCAGTTCAGAGTGGACTACATCCT

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites