CircRNA Information

General Information
circRNA Basic Information
CircID chr20:58994742|58994967
Strand +
CircType exon
Host Gene ENSG00000101158.11;
Algorism CIRI2;
Sequence GGCCAGATCTGTCCTGAGGGGTCGTGGGAGCCCAGCGCCTGCCTTGAGGGAAATGAACACTGAAAACAGGATTTGGGAGCAGTATTGGATTGACAGCAGAGAAGGGACTGTTTGTAAGGGCAGTTTCTCACTGAAGCTGCTACCATTTTCCTTTGTAAAGAAGTCATCCACCTCCTCCCAGCGGTGCCCATTTTCAAGACGCTGCCCGAGCCTCTTAAAACAGCTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:58994742|58994967 hsa-miR-15a-5p 0 0 1
chr20:58994742|58994967 hsa-miR-15a-3p 0 0 1
chr20:58994742|58994967 hsa-miR-212-5p 0 0 1
chr20:58994742|58994967 hsa-miR-212-3p 0 0 1
chr20:58994742|58994967 hsa-miR-200b-5p 0 0 1
chr20:58994742|58994967 hsa-miR-200b-3p 0 0 1
chr20:58994742|58994967 hsa-miR-15b-5p 0 0 1
chr20:58994742|58994967 hsa-miR-15b-3p 0 0 1
chr20:58994742|58994967 hsa-miR-132-5p 0 0 1
chr20:58994742|58994967 hsa-miR-132-3p 0 0 1
chr20:58994742|58994967 hsa-miR-150-5p 0 0 1
chr20:58994742|58994967 hsa-miR-150-3p 0 0 1
chr20:58994742|58994967 hsa-miR-195-5p 0 0 1
chr20:58994742|58994967 hsa-miR-195-3p 0 0 1
chr20:58994742|58994967 hsa-miR-200c-5p 0 0 1
chr20:58994742|58994967 hsa-miR-200c-3p 0 0 1
chr20:58994742|58994967 hsa-miR-424-5p 0 0 1
chr20:58994742|58994967 hsa-miR-424-3p 0 0 1
chr20:58994742|58994967 hsa-miR-429 0 0 1
chr20:58994742|58994967 hsa-miR-497-5p 0 0 1
chr20:58994742|58994967 hsa-miR-497-3p 0 0 1
chr20:58994742|58994967 hsa-miR-522-5p 0 0 1
chr20:58994742|58994967 hsa-miR-522-3p 0 0 1
chr20:58994742|58994967 hsa-miR-503-5p 0 0 1
chr20:58994742|58994967 hsa-miR-503-3p 0 0 1
chr20:58994742|58994967 hsa-miR-539-5p 0 0 1
chr20:58994742|58994967 hsa-miR-539-3p 0 0 1
chr20:58994742|58994967 hsa-miR-579-5p 0 0 1
chr20:58994742|58994967 hsa-miR-579-3p 0 0 1
chr20:58994742|58994967 hsa-miR-617 0 0 1
chr20:58994742|58994967 hsa-miR-626 0 0 1
chr20:58994742|58994967 hsa-miR-646 0 0 1
chr20:58994742|58994967 hsa-miR-662 0 0 1
chr20:58994742|58994967 hsa-miR-765 0 1 1
chr20:58994742|58994967 hsa-miR-938 0 1 1
chr20:58994742|58994967 hsa-miR-940 1 1 1
chr20:58994742|58994967 hsa-miR-942-5p 0 0 1
chr20:58994742|58994967 hsa-miR-942-3p 0 0 1
chr20:58994742|58994967 hsa-miR-1206 0 0 1
chr20:58994742|58994967 hsa-miR-1255a 0 0 1
chr20:58994742|58994967 hsa-miR-532-3p 0 1 1
chr20:58994742|58994967 hsa-miR-885-3p 0 1 1
chr20:58994742|58994967 hsa-miR-524-5p 0 0 1
chr20:58994742|58994967 hsa-miR-520d-5p 0 0 1
chr20:58994742|58994967 hsa-miR-642 0 0 1
chr20:58994742|58994967 hsa-miR-16 0 0 1
chr20:58994742|58994967 hsa-miR-1255b 0 0 1
chr20:58994742|58994967 hsa-miR-638 1 0 0
chr20:58994742|58994967 hsa-miR-762 1 0 0
chr20:58994742|58994967 hsa-miR-1538 1 0 0
chr20:58994742|58994967 hsa-miR-3147 1 0 0
chr20:58994742|58994967 hsa-miR-3714 0 1 0
chr20:58994742|58994967 hsa-miR-4647 0 1 0
chr20:58994742|58994967 hsa-miR-4674 1 0 0
chr20:58994742|58994967 hsa-miR-4706 1 0 0
chr20:58994742|58994967 hsa-miR-4739 1 0 0
chr20:58994742|58994967 hsa-miR-5787 1 0 0
chr20:58994742|58994967 hsa-miR-6071 0 1 0
chr20:58994742|58994967 hsa-miR-6085 1 0 0
chr20:58994742|58994967 hsa-miR-9899 1 0 0
chr20:58994742|58994967 hsa-miR-103a-2-5p 1 0 0
chr20:58994742|58994967 hsa-miR-18a-3p 0 1 0
chr20:58994742|58994967 hsa-miR-7106-5p 1 1 0
chr20:58994742|58994967 hsa-miR-6825-5p 1 0 0
chr20:58994742|58994967 hsa-miR-4687-3p 1 0 0
chr20:58994742|58994967 hsa-miR-3692-5p 1 1 0
chr20:58994742|58994967 hsa-miR-6089 1 0 0
chr20:58994742|58994967 hsa-miR-3192-5p 0 1 0
chr20:58994742|58994967 hsa-miR-6880-5p 1 0 0
chr20:58994742|58994967 hsa-miR-4695-5p 1 0 0
chr20:58994742|58994967 hsa-miR-197-5p 1 0 0
chr20:58994742|58994967 hsa-miR-2467-5p 0 1 0
chr20:58994742|58994967 hsa-miR-30b-3p 1 1 0
chr20:58994742|58994967 hsa-miR-4738-3p 1 0 0
chr20:58994742|58994967 hsa-miR-1225-5p 1 0 0
chr20:58994742|58994967 hsa-miR-2115-5p 0 1 0
chr20:58994742|58994967 hsa-miR-6499-3p 0 1 0
chr20:58994742|58994967 hsa-miR-3158-3p 1 0 0
chr20:58994742|58994967 hsa-miR-2114-5p 0 1 0
chr20:58994742|58994967 hsa-miR-5000-3p 0 1 0
chr20:58994742|58994967 hsa-miR-4750-5p 1 0 0
chr20:58994742|58994967 hsa-miR-34a-5p 1 0 0
chr20:58994742|58994967 hsa-miR-2277-5p 1 0 0
chr20:58994742|58994967 hsa-miR-4763-3p 1 0 0
chr20:58994742|58994967 hsa-miR-6769b-5p 1 0 0
chr20:58994742|58994967 hsa-miR-6812-5p 1 0 0
chr20:58994742|58994967 hsa-miR-6893-5p 0 1 0
chr20:58994742|58994967 hsa-miR-6756-5p 1 0 0
chr20:58994742|58994967 hsa-miR-6803-5p 1 0 0
chr20:58994742|58994967 hsa-miR-6813-5p 1 0 0
chr20:58994742|58994967 hsa-miR-11181-3p 0 1 0
chr20:58994742|58994967 hsa-miR-6774-5p 1 0 0
chr20:58994742|58994967 hsa-miR-6779-5p 1 1 0
chr20:58994742|58994967 hsa-miR-6808-5p 0 1 0
chr20:58994742|58994967 hsa-miR-4728-5p 1 0 0
chr20:58994742|58994967 hsa-miR-5196-5p 1 0 0
chr20:58994742|58994967 hsa-miR-1909-3p 1 0 0
chr20:58994742|58994967 hsa-miR-4632-5p 1 0 0
chr20:58994742|58994967 hsa-miR-6795-5p 1 0 0
chr20:58994742|58994967 hsa-miR-6858-5p 1 0 0
chr20:58994742|58994967 hsa-miR-6883-5p 1 1 0
chr20:58994742|58994967 hsa-miR-6887-5p 1 0 0
chr20:58994742|58994967 hsa-miR-3187-5p 1 0 0
chr20:58994742|58994967 hsa-miR-5008-3p 1 0 0
chr20:58994742|58994967 hsa-miR-6785-5p 1 1 0
chr20:58994742|58994967 hsa-miR-3689d 0 1 0
chr20:58994742|58994967 hsa-miR-10400-3p 1 1 0
chr20:58994742|58994967 hsa-miR-320a-3p 0 1 0
chr20:58994742|58994967 hsa-miR-320b 0 1 0
chr20:58994742|58994967 hsa-miR-320c 0 1 0
chr20:58994742|58994967 hsa-miR-103a-1-5p 1 0 0
chr20:58994742|58994967 hsa-miR-1255b-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr20:58994742|58994967
ORF Type ORF1
Protein Length 71
Nucleotide Length 213
Protein Sequence MRGRGSPAPALREMNTENRIWEQYWIDSREGTVCKGSFSLKLLPFSFVKKSSTSSQRCPFSRRCPSLLKQL
Nucleotide Sequence CTGAGGGGTCGTGGGAGCCCAGCGCCTGCCTTGAGGGAAATGAACACTGAAAACAGGATTTGGGAGCAGTATTGGATTGACAGCAGAGAAGGGACTGTTTGTAAGGGCAGTTTCTCACTGAAGCTGCTACCATTTTCCTTTGTAAAGAAGTCATCCACCTCCTCCCAGCGGTGCCCATTTTCAAGACGCTGCCCGAGCCTCTTAAAACAGCTT
CircID chr20:58994742|58994967
ORF Type ORF2
Protein Length 27
Nucleotide Length 81
Protein Sequence MLPNPVFSVHFPQGRRWAPTTPQDRSG
Nucleotide Sequence CTGCTCCCAAATCCTGTTTTCAGTGTTCATTTCCCTCAAGGCAGGCGCTGGGCTCCCACGACCCCTCAGGACAGATCTGGC
CircID chr20:58994742|58994967
ORF Type ORF3
Protein Length 41
Nucleotide Length 123
Protein Sequence MPLQTVPSLLSIQYCSQILFSVFISLKAGAGLPRPLRTDLA
Nucleotide Sequence CTGCCCTTACAAACAGTCCCTTCTCTGCTGTCAATCCAATACTGCTCCCAAATCCTGTTTTCAGTGTTCATTTCCCTCAAGGCAGGCGCTGGGCTCCCACGACCCCTCAGGACAGATCTGGCC
CircID chr20:58994742|58994967
ORF Type ORF4
Protein Length 65
Nucleotide Length 195
Protein Sequence MKMGTAGRRWMTSLQRKMVAASVRNCPYKQSLLCCQSNTAPKSCFQCSFPSRQALGSHDPSGQIW
Nucleotide Sequence TTGAAAATGGGCACCGCTGGGAGGAGGTGGATGACTTCTTTACAAAGGAAAATGGTAGCAGCTTCAGTGAGAAACTGCCCTTACAAACAGTCCCTTCTCTGCTGTCAATCCAATACTGCTCCCAAATCCTGTTTTCAGTGTTCATTTCCCTCAAGGCAGGCGCTGGGCTCCCACGACCCCTCAGGACAGATCTGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab