CircRNA Information

General Information
circRNA Basic Information
CircID chr20:6041419|6041654
Strand -
CircType exon
Host Gene ENSG00000125872.7;
Algorism CIRI2;
Sequence CCATGCACTACCGAGTTGGGGGCACACCAGTGGACCAGCGCCGACGTGTCCGTGGTCTCCGTCACCCCCTGCAGCCTGGGCGGGTCTGGGATGGTGTCTTCCCCGCTGAGGCCGGGGCACCGGCACCGCCACCGCCTCTGCAGCTCCGCGCACGGGGTCTGCAGGTGCTTGCAGGGATGGTAATCACAGGGGACGTCCTGGTGAGGCGTTCCCACCTCCTCCTTCCTCCCTTCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:6041419|6041654 hsa-miR-130a-5p 0 0 1
chr20:6041419|6041654 hsa-miR-130a-3p 0 0 1
chr20:6041419|6041654 hsa-miR-301a-5p 0 0 1
chr20:6041419|6041654 hsa-miR-301a-3p 0 0 1
chr20:6041419|6041654 hsa-miR-130b-5p 0 0 1
chr20:6041419|6041654 hsa-miR-130b-3p 0 0 1
chr20:6041419|6041654 hsa-miR-558 0 0 1
chr20:6041419|6041654 hsa-miR-614 0 0 1
chr20:6041419|6041654 hsa-miR-454-5p 0 0 1
chr20:6041419|6041654 hsa-miR-454-3p 0 0 1
chr20:6041419|6041654 hsa-miR-765 0 0 1
chr20:6041419|6041654 hsa-miR-301b-5p 0 0 1
chr20:6041419|6041654 hsa-miR-301b-3p 0 0 1
chr20:6041419|6041654 hsa-miR-1226-5p 0 0 1
chr20:6041419|6041654 hsa-miR-1226-3p 0 0 1
chr20:6041419|6041654 hsa-miR-1205 0 0 1
chr20:6041419|6041654 hsa-miR-1292-5p 0 0 1
chr20:6041419|6041654 hsa-miR-1292-3p 0 0 1
chr20:6041419|6041654 hsa-miR-1321 0 0 1
chr20:6041419|6041654 hsa-miR-331-3p 0 0 1
chr20:6041419|6041654 hsa-miR-7 0 0 1
chr20:6041419|6041654 hsa-miR-923 0 0 1
chr20:6041419|6041654 hsa-miR-663a 1 0 0
chr20:6041419|6041654 hsa-miR-658 1 0 0
chr20:6041419|6041654 hsa-miR-1183 1 0 0
chr20:6041419|6041654 hsa-miR-1469 0 1 0
chr20:6041419|6041654 hsa-miR-3141 1 0 0
chr20:6041419|6041654 hsa-miR-4533 1 1 0
chr20:6041419|6041654 hsa-miR-3960 1 0 0
chr20:6041419|6041654 hsa-miR-4706 1 1 0
chr20:6041419|6041654 hsa-miR-4739 1 1 0
chr20:6041419|6041654 hsa-miR-5091 0 1 0
chr20:6041419|6041654 hsa-miR-6127 1 1 0
chr20:6041419|6041654 hsa-miR-6131 0 1 0
chr20:6041419|6041654 hsa-miR-6133 1 1 0
chr20:6041419|6041654 hsa-miR-12118 0 1 0
chr20:6041419|6041654 hsa-miR-4433b-3p 1 0 0
chr20:6041419|6041654 hsa-miR-6734-5p 1 0 0
chr20:6041419|6041654 hsa-miR-4665-3p 1 0 0
chr20:6041419|6041654 hsa-miR-7106-5p 1 1 0
chr20:6041419|6041654 hsa-miR-6894-5p 1 0 0
chr20:6041419|6041654 hsa-miR-4786-5p 0 1 0
chr20:6041419|6041654 hsa-miR-7847-3p 1 0 0
chr20:6041419|6041654 hsa-miR-593-5p 0 1 0
chr20:6041419|6041654 hsa-miR-6732-5p 1 1 0
chr20:6041419|6041654 hsa-miR-6798-5p 1 1 0
chr20:6041419|6041654 hsa-miR-2467-3p 0 1 0
chr20:6041419|6041654 hsa-miR-6821-5p 1 1 0
chr20:6041419|6041654 hsa-miR-7109-5p 1 0 0
chr20:6041419|6041654 hsa-miR-6763-3p 1 0 0
chr20:6041419|6041654 hsa-miR-3202 0 1 0
chr20:6041419|6041654 hsa-miR-4787-5p 1 0 0
chr20:6041419|6041654 hsa-miR-149-3p 1 0 0
chr20:6041419|6041654 hsa-miR-146b-3p 0 1 0
chr20:6041419|6041654 hsa-miR-3158-5p 0 1 0
chr20:6041419|6041654 hsa-miR-2276-3p 0 1 0
chr20:6041419|6041654 hsa-miR-4707-5p 0 1 0
chr20:6041419|6041654 hsa-miR-4746-3p 0 1 0
chr20:6041419|6041654 hsa-miR-4679 0 1 0
chr20:6041419|6041654 hsa-miR-10400-5p 1 0 0
chr20:6041419|6041654 hsa-miR-1207-5p 1 0 0
chr20:6041419|6041654 hsa-miR-4763-3p 1 0 0
chr20:6041419|6041654 hsa-miR-6778-5p 1 0 0
chr20:6041419|6041654 hsa-miR-6787-5p 1 0 0
chr20:6041419|6041654 hsa-miR-6752-5p 1 1 0
chr20:6041419|6041654 hsa-miR-6754-5p 1 0 0
chr20:6041419|6041654 hsa-miR-6803-5p 1 0 0
chr20:6041419|6041654 hsa-miR-7110-5p 0 1 0
chr20:6041419|6041654 hsa-miR-11181-3p 0 1 0
chr20:6041419|6041654 hsa-miR-1249-5p 1 1 0
chr20:6041419|6041654 hsa-miR-6722-3p 1 1 0
chr20:6041419|6041654 hsa-miR-6751-5p 1 0 0
chr20:6041419|6041654 hsa-miR-6797-5p 0 1 0
chr20:6041419|6041654 hsa-miR-5196-5p 1 0 0
chr20:6041419|6041654 hsa-miR-6780b-5p 0 1 0
chr20:6041419|6041654 hsa-miR-1909-3p 1 1 0
chr20:6041419|6041654 hsa-miR-328-5p 1 0 0
chr20:6041419|6041654 hsa-miR-4725-3p 0 1 0
chr20:6041419|6041654 hsa-miR-6887-5p 1 0 0
chr20:6041419|6041654 hsa-miR-10396a-3p 0 1 0
chr20:6041419|6041654 hsa-miR-10396b-3p 0 1 0
chr20:6041419|6041654 hsa-miR-3173-3p 0 1 0
chr20:6041419|6041654 hsa-miR-6876-5p 0 1 0
chr20:6041419|6041654 hsa-miR-6891-5p 0 1 0
chr20:6041419|6041654 hsa-miR-3689d 0 1 0
chr20:6041419|6041654 hsa-miR-6511a-3p 0 1 0
chr20:6041419|6041654 hsa-miR-6511b-3p 0 1 0
chr20:6041419|6041654 hsa-miR-10394-5p 0 1 0
chr20:6041419|6041654 hsa-miR-33b-3p 1 0 0
chr20:6041419|6041654 hsa-miR-10397-5p 1 0 0
chr20:6041419|6041654 hsa-miR-4781-5p 0 1 0
chr20:6041419|6041654 hsa-miR-498-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr20:6041419|6041654
ORF Type ORF1
Protein Length 55
Nucleotide Length 168
Protein Sequence MGAHQWTSADVSVVSVTPCSLGGSGMVSSPLRPGHRHRHRLCSSAHGVCRCLQGW
Nucleotide Sequence TTGGGGGCACACCAGTGGACCAGCGCCGACGTGTCCGTGGTCTCCGTCACCCCCTGCAGCCTGGGCGGGTCTGGGATGGTGTCTTCCCCGCTGAGGCCGGGGCACCGGCACCGCCACCGCCTCTGCAGCTCCGCGCACGGGGTCTGCAGGTGCTTGCAGGGATGGTAA
CircID chr20:6041419|6041654
ORF Type ORF2
Protein Length 78
Nucleotide Length 234
Protein Sequence MHYRVGGTPVDQRRRVRGLRHPLQPGRVWDGVFPAEAGAPAPPPPLQLRARGLQVLAGMVITGDVLVRRSHLLLPPFL
Nucleotide Sequence ATGCACTACCGAGTTGGGGGCACACCAGTGGACCAGCGCCGACGTGTCCGTGGTCTCCGTCACCCCCTGCAGCCTGGGCGGGTCTGGGATGGTGTCTTCCCCGCTGAGGCCGGGGCACCGGCACCGCCACCGCCTCTGCAGCTCCGCGCACGGGGTCTGCAGGTGCTTGCAGGGATGGTAATCACAGGGGACGTCCTGGTGAGGCGTTCCCACCTCCTCCTTCCTCCCTTCCTC
CircID chr20:6041419|6041654
ORF Type ORF3
Protein Length 54
Nucleotide Length 162
Protein Sequence MQTPCAELQRRWRCRCPGLSGEDTIPDPPRLQGVTETTDTSALVHWCAPNSVVH
Nucleotide Sequence CTGCAGACCCCGTGCGCGGAGCTGCAGAGGCGGTGGCGGTGCCGGTGCCCCGGCCTCAGCGGGGAAGACACCATCCCAGACCCGCCCAGGCTGCAGGGGGTGACGGAGACCACGGACACGTCGGCGCTGGTCCACTGGTGTGCCCCCAACTCGGTAGTGCAT
CircID chr20:6041419|6041654
ORF Type ORF4
Protein Length 58
Nucleotide Length 174
Protein Sequence MQAPADPVRGAAEAVAVPVPRPQRGRHHPRPAQAAGGDGDHGHVGAGPLVCPQLGSAW
Nucleotide Sequence CTGCAAGCACCTGCAGACCCCGTGCGCGGAGCTGCAGAGGCGGTGGCGGTGCCGGTGCCCCGGCCTCAGCGGGGAAGACACCATCCCAGACCCGCCCAGGCTGCAGGGGGTGACGGAGACCACGGACACGTCGGCGCTGGTCCACTGGTGTGCCCCCAACTCGGTAGTGCATGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab