CircRNA Information

General Information
circRNA Basic Information
CircID chr20:62812795|62812995
Strand +
CircType exon
Host Gene ENSG00000060491.15;
Algorism CIRI2;
Sequence CTTCCTCCGCTTCCTCACCTTGTCGGCCACCCTGGCTCCCAGGGGTTGGCGGCAGGGCTGCACTGCCTCCCCAGGGTCCTGACCGCCCACTTCCTGGGTCCCCGTCCTGAGGCTGCCCTGGCTGAGGGCACACCCCTCCAAATTCAGAGCGATCTTCTCCACCTCTGAGGCACTCTGAGGGCCTGGCTCTGTGGGCGGCTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:62812795|62812995 hsa-miR-148a-5p 0 0 1
chr20:62812795|62812995 hsa-miR-148a-3p 0 0 1
chr20:62812795|62812995 hsa-miR-34a-5p 0 0 1
chr20:62812795|62812995 hsa-miR-34a-3p 0 0 1
chr20:62812795|62812995 hsa-miR-152-5p 0 0 1
chr20:62812795|62812995 hsa-miR-152-3p 0 0 1
chr20:62812795|62812995 hsa-miR-148b-5p 0 0 1
chr20:62812795|62812995 hsa-miR-148b-3p 0 0 1
chr20:62812795|62812995 hsa-miR-449a 0 1 1
chr20:62812795|62812995 hsa-miR-519e-5p 0 0 1
chr20:62812795|62812995 hsa-miR-519e-3p 0 0 1
chr20:62812795|62812995 hsa-miR-504-5p 0 0 1
chr20:62812795|62812995 hsa-miR-504-3p 0 0 1
chr20:62812795|62812995 hsa-miR-624-5p 0 0 1
chr20:62812795|62812995 hsa-miR-624-3p 0 0 1
chr20:62812795|62812995 hsa-miR-650 0 1 1
chr20:62812795|62812995 hsa-miR-449b-5p 0 0 1
chr20:62812795|62812995 hsa-miR-449b-3p 0 0 1
chr20:62812795|62812995 hsa-miR-658 0 0 1
chr20:62812795|62812995 hsa-miR-920 0 0 1
chr20:62812795|62812995 hsa-miR-939-5p 0 0 1
chr20:62812795|62812995 hsa-miR-939-3p 0 0 1
chr20:62812795|62812995 hsa-miR-1253 0 0 1
chr20:62812795|62812995 hsa-miR-1827 0 0 1
chr20:62812795|62812995 hsa-miR-331-3p 0 0 1
chr20:62812795|62812995 hsa-miR-515-3p 0 0 1
chr20:62812795|62812995 hsa-miR-34c-5p 0 1 1
chr20:62812795|62812995 hsa-miR-768-5p 0 0 1
chr20:62812795|62812995 hsa-miR-608 1 0 0
chr20:62812795|62812995 hsa-miR-663a 1 0 0
chr20:62812795|62812995 hsa-miR-762 1 0 0
chr20:62812795|62812995 hsa-miR-663b 1 0 0
chr20:62812795|62812995 hsa-miR-1293 1 0 0
chr20:62812795|62812995 hsa-miR-711 0 1 0
chr20:62812795|62812995 hsa-miR-3141 1 0 0
chr20:62812795|62812995 hsa-miR-4257 1 1 0
chr20:62812795|62812995 hsa-miR-4281 1 0 0
chr20:62812795|62812995 hsa-miR-4292 0 1 0
chr20:62812795|62812995 hsa-miR-4651 1 0 0
chr20:62812795|62812995 hsa-miR-4688 1 0 0
chr20:62812795|62812995 hsa-miR-4706 1 1 0
chr20:62812795|62812995 hsa-miR-4741 1 0 0
chr20:62812795|62812995 hsa-miR-5787 1 0 0
chr20:62812795|62812995 hsa-miR-6090 1 0 0
chr20:62812795|62812995 hsa-miR-6134 0 1 0
chr20:62812795|62812995 hsa-miR-6745 1 0 0
chr20:62812795|62812995 hsa-miR-8089 1 1 0
chr20:62812795|62812995 hsa-miR-4433b-3p 1 0 0
chr20:62812795|62812995 hsa-miR-6840-3p 0 1 0
chr20:62812795|62812995 hsa-miR-3157-5p 0 1 0
chr20:62812795|62812995 hsa-miR-6747-5p 0 1 0
chr20:62812795|62812995 hsa-miR-6825-5p 0 1 0
chr20:62812795|62812995 hsa-miR-8071 1 0 0
chr20:62812795|62812995 hsa-miR-6515-5p 0 1 0
chr20:62812795|62812995 hsa-miR-6880-5p 1 1 0
chr20:62812795|62812995 hsa-miR-505-5p 0 1 0
chr20:62812795|62812995 hsa-miR-4755-3p 0 1 0
chr20:62812795|62812995 hsa-miR-4474-3p 1 0 0
chr20:62812795|62812995 hsa-miR-7108-5p 1 0 0
chr20:62812795|62812995 hsa-miR-6871-5p 0 1 0
chr20:62812795|62812995 hsa-miR-6748-5p 1 1 0
chr20:62812795|62812995 hsa-miR-6827-5p 0 1 0
chr20:62812795|62812995 hsa-miR-486-3p 0 1 0
chr20:62812795|62812995 hsa-miR-6782-5p 1 1 0
chr20:62812795|62812995 hsa-miR-5006-5p 1 0 0
chr20:62812795|62812995 hsa-miR-6786-5p 1 0 0
chr20:62812795|62812995 hsa-miR-1226-5p 1 0 0
chr20:62812795|62812995 hsa-miR-4640-5p 1 0 0
chr20:62812795|62812995 hsa-miR-6753-5p 1 0 0
chr20:62812795|62812995 hsa-miR-1908-5p 1 0 0
chr20:62812795|62812995 hsa-miR-1228-5p 1 0 0
chr20:62812795|62812995 hsa-miR-92b-5p 1 0 0
chr20:62812795|62812995 hsa-miR-4713-3p 1 1 0
chr20:62812795|62812995 hsa-miR-4787-5p 1 0 0
chr20:62812795|62812995 hsa-miR-7112-5p 1 0 0
chr20:62812795|62812995 hsa-miR-6895-5p 0 1 0
chr20:62812795|62812995 hsa-miR-3944-5p 0 1 0
chr20:62812795|62812995 hsa-miR-6752-3p 0 1 0
chr20:62812795|62812995 hsa-miR-5189-3p 0 1 0
chr20:62812795|62812995 hsa-miR-3173-5p 0 1 0
chr20:62812795|62812995 hsa-miR-6779-3p 0 1 0
chr20:62812795|62812995 hsa-miR-3144-5p 0 1 0
chr20:62812795|62812995 hsa-miR-1233-5p 0 1 0
chr20:62812795|62812995 hsa-miR-6769b-5p 1 0 0
chr20:62812795|62812995 hsa-miR-6775-5p 1 0 0
chr20:62812795|62812995 hsa-miR-6726-5p 1 0 0
chr20:62812795|62812995 hsa-miR-6743-5p 1 0 0
chr20:62812795|62812995 hsa-miR-6752-5p 1 1 0
chr20:62812795|62812995 hsa-miR-6754-5p 1 0 0
chr20:62812795|62812995 hsa-miR-6756-5p 1 0 0
chr20:62812795|62812995 hsa-miR-6842-5p 1 1 0
chr20:62812795|62812995 hsa-miR-6722-3p 1 0 0
chr20:62812795|62812995 hsa-miR-4728-5p 1 0 0
chr20:62812795|62812995 hsa-miR-5196-5p 1 0 0
chr20:62812795|62812995 hsa-miR-6836-5p 1 0 0
chr20:62812795|62812995 hsa-miR-10396b-5p 1 0 0
chr20:62812795|62812995 hsa-miR-328-5p 1 0 0
chr20:62812795|62812995 hsa-miR-449c-5p 0 1 0
chr20:62812795|62812995 hsa-miR-4632-5p 0 1 0
chr20:62812795|62812995 hsa-miR-4649-5p 1 0 0
chr20:62812795|62812995 hsa-miR-4685-5p 1 1 0
chr20:62812795|62812995 hsa-miR-4749-5p 1 0 0
chr20:62812795|62812995 hsa-miR-6729-5p 1 0 0
chr20:62812795|62812995 hsa-miR-6735-5p 0 1 0
chr20:62812795|62812995 hsa-miR-6777-5p 1 1 0
chr20:62812795|62812995 hsa-miR-6794-5p 1 0 0
chr20:62812795|62812995 hsa-miR-6846-5p 1 0 0
chr20:62812795|62812995 hsa-miR-4436b-3p 0 1 0
chr20:62812795|62812995 hsa-miR-1266-5p 0 1 0
chr20:62812795|62812995 hsa-miR-6799-3p 0 1 0
chr20:62812795|62812995 hsa-miR-1914-3p 0 1 0
chr20:62812795|62812995 hsa-miR-4700-5p 0 1 0
chr20:62812795|62812995 hsa-miR-4667-5p 0 1 0
chr20:62812795|62812995 hsa-miR-6791-5p 1 1 0
chr20:62812795|62812995 hsa-miR-550a-5p 1 0 0
chr20:62812795|62812995 hsa-miR-6893-3p 0 1 0
chr20:62812795|62812995 hsa-miR-6837-5p 1 0 0
chr20:62812795|62812995 hsa-miR-6775-3p 0 1 0
chr20:62812795|62812995 hsa-miR-6884-5p 1 0 0
chr20:62812795|62812995 hsa-miR-33b-3p 0 1 0
chr20:62812795|62812995 hsa-miR-2682-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr20:62812795|62812995
ORF Type ORF1
Protein Length 40
Nucleotide Length 123
Protein Sequence MAAGLHCLPRVLTAHFLGPRPEAALAEGTPLQIQSDLLHL
Nucleotide Sequence TTGGCGGCAGGGCTGCACTGCCTCCCCAGGGTCCTGACCGCCCACTTCCTGGGTCCCCGTCCTGAGGCTGCCCTGGCTGAGGGCACACCCCTCCAAATTCAGAGCGATCTTCTCCACCTCTGA
CircID chr20:62812795|62812995
ORF Type ORF2
Protein Length 49
Nucleotide Length 147
Protein Sequence MNLEGCALSQGSLRTGTQEVGGQDPGEAVQPCRQPLGARVADKVRKRRK
Nucleotide Sequence CTGAATTTGGAGGGGTGTGCCCTCAGCCAGGGCAGCCTCAGGACGGGGACCCAGGAAGTGGGCGGTCAGGACCCTGGGGAGGCAGTGCAGCCCTGCCGCCAACCCCTGGGAGCCAGGGTGGCCGACAAGGTGAGGAAGCGGAGGAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab