CircRNA Information

General Information
circRNA Basic Information
CircID chr20:63521685|63521862
Strand -
CircType exon
Host Gene ENSG00000125534.8;
Algorism CIRI2;
Sequence CCGGGTCATTGGTGGGCCAGCTTCTTTTTCGGGAAGTCCACCCTCCCGTTCATGGCCACGGTGTTGGAGTCCGCAGAGCACTCGGAACCTCCCCAGGCCTCCAGCAGCATGACCGCCTGTGGCCTGGCTCGGGACGCCCCGAGGAAGCAGCCCGGCGGTCAGTCCAGCACAGCCAGCG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:63521685|63521862 hsa-miR-422a 0 0 1
chr20:63521685|63521862 hsa-miR-617 0 0 1
chr20:63521685|63521862 hsa-miR-650 0 0 1
chr20:63521685|63521862 hsa-miR-661 0 0 1
chr20:63521685|63521862 hsa-miR-887-5p 0 0 1
chr20:63521685|63521862 hsa-miR-887-3p 0 0 1
chr20:63521685|63521862 hsa-miR-939-5p 0 0 1
chr20:63521685|63521862 hsa-miR-939-3p 0 0 1
chr20:63521685|63521862 hsa-miR-1238-5p 0 0 1
chr20:63521685|63521862 hsa-miR-1238-3p 0 0 1
chr20:63521685|63521862 hsa-miR-1204 0 0 1
chr20:63521685|63521862 hsa-miR-1287-5p 0 0 1
chr20:63521685|63521862 hsa-miR-1287-3p 0 0 1
chr20:63521685|63521862 hsa-miR-1288-5p 0 0 1
chr20:63521685|63521862 hsa-miR-1288-3p 0 0 1
chr20:63521685|63521862 hsa-miR-615-3p 0 0 1
chr20:63521685|63521862 hsa-miR-516a-3p 0 0 1
chr20:63521685|63521862 hsa-miR-378 0 0 1
chr20:63521685|63521862 hsa-miR-1269 0 0 1
chr20:63521685|63521862 hsa-miR-602 1 0 0
chr20:63521685|63521862 hsa-miR-608 1 0 0
chr20:63521685|63521862 hsa-miR-612 1 0 0
chr20:63521685|63521862 hsa-miR-637 1 0 0
chr20:63521685|63521862 hsa-miR-762 1 0 0
chr20:63521685|63521862 hsa-miR-3135b 1 0 0
chr20:63521685|63521862 hsa-miR-1587 1 0 0
chr20:63521685|63521862 hsa-miR-4739 1 0 0
chr20:63521685|63521862 hsa-miR-4741 1 0 0
chr20:63521685|63521862 hsa-miR-5192 1 0 0
chr20:63521685|63521862 hsa-miR-5787 1 0 0
chr20:63521685|63521862 hsa-miR-7974 1 0 0
chr20:63521685|63521862 hsa-miR-4731-5p 1 0 0
chr20:63521685|63521862 hsa-miR-6861-5p 1 0 0
chr20:63521685|63521862 hsa-miR-6825-5p 1 0 0
chr20:63521685|63521862 hsa-miR-6894-5p 1 0 0
chr20:63521685|63521862 hsa-miR-4687-3p 1 0 0
chr20:63521685|63521862 hsa-miR-6089 1 0 0
chr20:63521685|63521862 hsa-miR-6746-5p 1 0 0
chr20:63521685|63521862 hsa-miR-7108-5p 1 0 0
chr20:63521685|63521862 hsa-miR-6742-5p 1 0 0
chr20:63521685|63521862 hsa-miR-3180-3p 1 0 0
chr20:63521685|63521862 hsa-miR-6829-5p 1 0 0
chr20:63521685|63521862 hsa-miR-6732-5p 1 0 0
chr20:63521685|63521862 hsa-miR-6852-5p 1 0 0
chr20:63521685|63521862 hsa-miR-6771-5p 1 0 0
chr20:63521685|63521862 hsa-miR-6749-5p 1 0 0
chr20:63521685|63521862 hsa-miR-4638-3p 1 0 0
chr20:63521685|63521862 hsa-miR-149-3p 1 0 0
chr20:63521685|63521862 hsa-miR-6824-5p 1 0 0
chr20:63521685|63521862 hsa-miR-6789-5p 1 0 0
chr20:63521685|63521862 hsa-miR-6769b-5p 1 0 0
chr20:63521685|63521862 hsa-miR-1343-5p 1 0 0
chr20:63521685|63521862 hsa-miR-5001-5p 1 0 0
chr20:63521685|63521862 hsa-miR-6752-5p 1 0 0
chr20:63521685|63521862 hsa-miR-6756-5p 1 0 0
chr20:63521685|63521862 hsa-miR-6803-5p 1 0 0
chr20:63521685|63521862 hsa-miR-7107-5p 1 0 0
chr20:63521685|63521862 hsa-miR-6780a-5p 1 0 0
chr20:63521685|63521862 hsa-miR-6797-5p 1 0 0
chr20:63521685|63521862 hsa-miR-7111-5p 1 0 0
chr20:63521685|63521862 hsa-miR-3620-5p 1 0 0
chr20:63521685|63521862 hsa-miR-4728-5p 1 0 0
chr20:63521685|63521862 hsa-miR-3689a-3p 1 0 0
chr20:63521685|63521862 hsa-miR-6795-5p 1 0 0
chr20:63521685|63521862 hsa-miR-6883-5p 1 0 0
chr20:63521685|63521862 hsa-miR-3198 1 0 0
chr20:63521685|63521862 hsa-miR-6785-5p 1 0 0
chr20:63521685|63521862 hsa-miR-9851-5p 1 0 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:63521685|63521862
ORF Type ORF1
Protein Length 42
Nucleotide Length 126
Protein Sequence MATVLESAEHSEPPQASSSMTACGLARDAPRKQPGGQSSTAS
Nucleotide Sequence ATGGCCACGGTGTTGGAGTCCGCAGAGCACTCGGAACCTCCCCAGGCCTCCAGCAGCATGACCGCCTGTGGCCTGGCTCGGGACGCCCCGAGGAAGCAGCCCGGCGGTCAGTCCAGCACAGCCAGC
CircID chr20:63521685|63521862
ORF Type ORF2
Protein Length 56
Nucleotide Length 168
Protein Sequence MVGQLLFREVHPPVHGHGVGVRRALGTSPGLQQHDRLWPGSGRPEEAARRSVQHSQ
Nucleotide Sequence TTGGTGGGCCAGCTTCTTTTTCGGGAAGTCCACCCTCCCGTTCATGGCCACGGTGTTGGAGTCCGCAGAGCACTCGGAACCTCCCCAGGCCTCCAGCAGCATGACCGCCTGTGGCCTGGCTCGGGACGCCCCGAGGAAGCAGCCCGGCGGTCAGTCCAGCACAGCCAG
CircID chr20:63521685|63521862
ORF Type ORF3
Protein Length 40
Nucleotide Length 123
Protein Sequence MCWTDRRAASSGRPEPGHRRSCCWRPGEVPSALRTPTPWP
Nucleotide Sequence CTGTGCTGGACTGACCGCCGGGCTGCTTCCTCGGGGCGTCCCGAGCCAGGCCACAGGCGGTCATGCTGCTGGAGGCCTGGGGAGGTTCCGAGTGCTCTGCGGACTCCAACACCGTGGCCATGA
CircID chr20:63521685|63521862
ORF Type ORF4
Protein Length 54
Nucleotide Length 162
Protein Sequence MTAGLLPRGVPSQATGGHAAGGLGRFRVLCGLQHRGHEREGGLPEKEAGPPMTR
Nucleotide Sequence CTGACCGCCGGGCTGCTTCCTCGGGGCGTCCCGAGCCAGGCCACAGGCGGTCATGCTGCTGGAGGCCTGGGGAGGTTCCGAGTGCTCTGCGGACTCCAACACCGTGGCCATGAACGGGAGGGTGGACTTCCCGAAAAAGAAGCTGGCCCACCAATGACCCGG
CircID chr20:63521685|63521862
ORF Type ORF5
Protein Length 34
Nucleotide Length 105
Protein Sequence MLLEAWGGSECSADSNTVAMNGRVDFPKKKLAHQ
Nucleotide Sequence ATGCTGCTGGAGGCCTGGGGAGGTTCCGAGTGCTCTGCGGACTCCAACACCGTGGCCATGAACGGGAGGGTGGACTTCCCGAAAAAGAAGCTGGCCCACCAATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab