CircRNA Information

General Information
circRNA Basic Information
CircID chr20:63740989|63741159
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCCCAGGCCTGGCGTGAGGCCCACAGCTGCTGTTGCACAACCCTGGTTAATGTGTGATGGGGGGAGGCCTGGGCCTGGCCCGCCCCTCTGCCAGGGCTTCAGACCCCTGCCCAGCCCCAGTATCTGAAGGAACCACAGTGGAGCCAAGCCCGCGATGTGGAGAACTCAGG
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:63740989|63741159 hsa-miR-19a-5p 0 0 1
chr20:63740989|63741159 hsa-miR-19a-3p 0 0 1
chr20:63740989|63741159 hsa-miR-205-5p 0 0 1
chr20:63740989|63741159 hsa-miR-205-3p 0 0 1
chr20:63740989|63741159 hsa-miR-377-5p 0 0 1
chr20:63740989|63741159 hsa-miR-377-3p 0 0 1
chr20:63740989|63741159 hsa-miR-612 1 1 1
chr20:63740989|63741159 hsa-miR-646 0 0 1
chr20:63740989|63741159 hsa-miR-661 0 0 1
chr20:63740989|63741159 hsa-miR-296-3p 0 0 1
chr20:63740989|63741159 hsa-miR-423-5p 0 0 1
chr20:63740989|63741159 hsa-miR-1207-5p 1 1 1
chr20:63740989|63741159 hsa-miR-515-5p 0 0 1
chr20:63740989|63741159 hsa-miR-1285 0 0 1
chr20:63740989|63741159 hsa-miR-19b 0 0 1
chr20:63740989|63741159 hsa-miR-484 0 1 0
chr20:63740989|63741159 hsa-miR-637 1 0 0
chr20:63740989|63741159 hsa-miR-663a 1 0 0
chr20:63740989|63741159 hsa-miR-762 1 1 0
chr20:63740989|63741159 hsa-miR-2861 1 0 0
chr20:63740989|63741159 hsa-miR-3147 1 0 0
chr20:63740989|63741159 hsa-miR-3196 0 1 0
chr20:63740989|63741159 hsa-miR-4296 0 1 0
chr20:63740989|63741159 hsa-miR-4322 0 1 0
chr20:63740989|63741159 hsa-miR-1268b 1 0 0
chr20:63740989|63741159 hsa-miR-4492 0 1 0
chr20:63740989|63741159 hsa-miR-4498 1 1 0
chr20:63740989|63741159 hsa-miR-4505 1 1 0
chr20:63740989|63741159 hsa-miR-4507 1 0 0
chr20:63740989|63741159 hsa-miR-4508 1 0 0
chr20:63740989|63741159 hsa-miR-1587 1 0 0
chr20:63740989|63741159 hsa-miR-4651 1 0 0
chr20:63740989|63741159 hsa-miR-4682 1 1 0
chr20:63740989|63741159 hsa-miR-4741 1 0 0
chr20:63740989|63741159 hsa-miR-5787 1 0 0
chr20:63740989|63741159 hsa-miR-6085 1 0 0
chr20:63740989|63741159 hsa-miR-6860 1 1 0
chr20:63740989|63741159 hsa-miR-8073 0 1 0
chr20:63740989|63741159 hsa-miR-8089 1 0 0
chr20:63740989|63741159 hsa-miR-134-3p 0 1 0
chr20:63740989|63741159 hsa-miR-4747-3p 1 1 0
chr20:63740989|63741159 hsa-miR-671-5p 1 1 0
chr20:63740989|63741159 hsa-miR-6861-5p 1 0 0
chr20:63740989|63741159 hsa-miR-4722-5p 1 0 0
chr20:63740989|63741159 hsa-miR-4755-3p 0 1 0
chr20:63740989|63741159 hsa-miR-6721-5p 1 1 0
chr20:63740989|63741159 hsa-miR-4655-5p 1 0 0
chr20:63740989|63741159 hsa-miR-23a-5p 1 0 0
chr20:63740989|63741159 hsa-miR-6798-5p 1 0 0
chr20:63740989|63741159 hsa-miR-2467-3p 0 1 0
chr20:63740989|63741159 hsa-miR-1229-5p 1 0 0
chr20:63740989|63741159 hsa-miR-6784-5p 1 0 0
chr20:63740989|63741159 hsa-miR-6753-5p 0 1 0
chr20:63740989|63741159 hsa-miR-1228-5p 1 0 0
chr20:63740989|63741159 hsa-miR-6823-5p 0 1 0
chr20:63740989|63741159 hsa-miR-6789-5p 1 1 0
chr20:63740989|63741159 hsa-miR-7112-5p 1 0 0
chr20:63740989|63741159 hsa-miR-6778-3p 0 1 0
chr20:63740989|63741159 hsa-miR-4649-3p 1 0 0
chr20:63740989|63741159 hsa-miR-6779-3p 1 0 0
chr20:63740989|63741159 hsa-miR-4650-5p 0 1 0
chr20:63740989|63741159 hsa-miR-4763-3p 1 1 0
chr20:63740989|63741159 hsa-miR-6787-5p 1 0 0
chr20:63740989|63741159 hsa-miR-6816-5p 1 1 0
chr20:63740989|63741159 hsa-miR-5001-5p 1 1 0
chr20:63740989|63741159 hsa-miR-6752-5p 1 0 0
chr20:63740989|63741159 hsa-miR-6756-5p 1 0 0
chr20:63740989|63741159 hsa-miR-6803-5p 1 0 0
chr20:63740989|63741159 hsa-miR-6813-5p 1 0 0
chr20:63740989|63741159 hsa-miR-6722-3p 1 1 0
chr20:63740989|63741159 hsa-miR-6751-5p 1 0 0
chr20:63740989|63741159 hsa-miR-6774-5p 1 0 0
chr20:63740989|63741159 hsa-miR-6808-5p 1 0 0
chr20:63740989|63741159 hsa-miR-6879-5p 1 0 0
chr20:63740989|63741159 hsa-miR-3620-5p 1 1 0
chr20:63740989|63741159 hsa-miR-5196-5p 1 0 0
chr20:63740989|63741159 hsa-miR-6836-5p 1 0 0
chr20:63740989|63741159 hsa-miR-10396b-5p 1 0 0
chr20:63740989|63741159 hsa-miR-1909-3p 1 1 0
chr20:63740989|63741159 hsa-miR-328-5p 1 1 0
chr20:63740989|63741159 hsa-miR-4649-5p 1 0 0
chr20:63740989|63741159 hsa-miR-6729-5p 1 0 0
chr20:63740989|63741159 hsa-miR-6846-5p 1 0 0
chr20:63740989|63741159 hsa-miR-6848-5p 1 0 0
chr20:63740989|63741159 hsa-miR-3187-5p 0 1 0
chr20:63740989|63741159 hsa-miR-3940-5p 1 0 0
chr20:63740989|63741159 hsa-miR-3184-5p 0 1 0
chr20:63740989|63741159 hsa-miR-6724-5p 1 0 0
chr20:63740989|63741159 hsa-miR-6791-5p 1 1 0
chr20:63740989|63741159 hsa-miR-6753-3p 1 0 0
chr20:63740989|63741159 hsa-miR-3927-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr20:63740989|63741159
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MGGGLGLARPSARASDPCPAPVSEGTTVEPSPRCGELR
Nucleotide Sequence ATGGGGGGAGGCCTGGGCCTGGCCCGCCCCTCTGCCAGGGCTTCAGACCCCTGCCCAGCCCCAGTATCTGAAGGAACCACAGTGGAGCCAAGCCCGCGATGTGGAGAACTCAGG
CircID chr20:63740989|63741159
ORF Type ORF2
Protein Length 27
Nucleotide Length 81
Protein Sequence MPGLQTPAQPQYLKEPQWSQARDVENS
Nucleotide Sequence CTGCCAGGGCTTCAGACCCCTGCCCAGCCCCAGTATCTGAAGGAACCACAGTGGAGCCAAGCCCGCGATGTGGAGAACTCA
CircID chr20:63740989|63741159
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MCDGGRPGPGPPLCQGFRPLPSPSI
Nucleotide Sequence ATGTGTGATGGGGGGAGGCCTGGGCCTGGCCCGCCCCTCTGCCAGGGCTTCAGACCCCTGCCCAGCCCCAGTATCTGA
CircID chr20:63740989|63741159
ORF Type ORF4
Protein Length 40
Nucleotide Length 123
Protein Sequence LSSPHRGLGSTVVPSDTGAGQGSEALAEGRARPRPPPITH
Nucleotide Sequence CTGAGTTCTCCACATCGCGGGCTTGGCTCCACTGTGGTTCCTTCAGATACTGGGGCTGGGCAGGGGTCTGAAGCCCTGGCAGAGGGGCGGGCCAGGCCCAGGCCTCCCCCCATCACACATTAA
CircID chr20:63740989|63741159
ORF Type ORF5
Protein Length 49
Nucleotide Length 147
Protein Sequence MAPLWFLQILGLGRGLKPWQRGGPGPGLPPSHINQGCATAAVGLTPGLG
Nucleotide Sequence TTGGCTCCACTGTGGTTCCTTCAGATACTGGGGCTGGGCAGGGGTCTGAAGCCCTGGCAGAGGGGCGGGCCAGGCCCAGGCCTCCCCCCATCACACATTAACCAGGGTTGTGCAACAGCAGCTGTGGGCCTCACGCCAGGCCTGGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab