CircRNA Information

General Information
circRNA Basic Information
CircID chr20:63865493|63865736
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CCACCCCGCGGCCCCTCTTCAGCTCCCGGGGCCACTGACCTCGAAGCTTATGATGGTCGTGGTGTGTTTTTTGCCCGCGGCCCAGACCGCTTCCTGGGCTCTCTCCAGCCGCCCTCCTGGTCTCCCCTGGGACCGTTCCGAGGTGTGGTTCCCTGGCGCCCGCCGTTGCTCCCGTAGTTTGGGTTCTGTCGCTCCCAGCAGGTCTCGCTTATGCCGCCCACCCCGTGCCCTGCTCTTGCTTGCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:63865493|63865736 hsa-miR-185-5p 0 0 1
chr20:63865493|63865736 hsa-miR-185-3p 0 0 1
chr20:63865493|63865736 hsa-miR-370-5p 0 0 1
chr20:63865493|63865736 hsa-miR-370-3p 0 0 1
chr20:63865493|63865736 hsa-miR-335-5p 0 0 1
chr20:63865493|63865736 hsa-miR-335-3p 0 0 1
chr20:63865493|63865736 hsa-miR-564 0 1 1
chr20:63865493|63865736 hsa-miR-608 1 1 1
chr20:63865493|63865736 hsa-miR-612 0 0 1
chr20:63865493|63865736 hsa-miR-541-5p 0 0 1
chr20:63865493|63865736 hsa-miR-541-3p 0 0 1
chr20:63865493|63865736 hsa-miR-665 0 0 1
chr20:63865493|63865736 hsa-miR-920 0 1 1
chr20:63865493|63865736 hsa-miR-1228-5p 0 0 1
chr20:63865493|63865736 hsa-miR-1228-3p 0 0 1
chr20:63865493|63865736 hsa-miR-663b 0 0 1
chr20:63865493|63865736 hsa-miR-769-5p 1 1 1
chr20:63865493|63865736 hsa-miR-423-5p 1 0 1
chr20:63865493|63865736 hsa-miR-654-5p 0 1 1
chr20:63865493|63865736 hsa-miR-362-3p 0 0 1
chr20:63865493|63865736 hsa-miR-1285 0 0 1
chr20:63865493|63865736 hsa-miR-329 0 0 1
chr20:63865493|63865736 hsa-miR-663a 1 0 0
chr20:63865493|63865736 hsa-miR-762 1 0 0
chr20:63865493|63865736 hsa-miR-298 1 0 0
chr20:63865493|63865736 hsa-miR-2278 0 1 0
chr20:63865493|63865736 hsa-miR-711 1 0 0
chr20:63865493|63865736 hsa-miR-2861 1 0 0
chr20:63865493|63865736 hsa-miR-3141 1 1 0
chr20:63865493|63865736 hsa-miR-3147 1 0 0
chr20:63865493|63865736 hsa-miR-3196 1 0 0
chr20:63865493|63865736 hsa-miR-4300 0 1 0
chr20:63865493|63865736 hsa-miR-4281 1 0 0
chr20:63865493|63865736 hsa-miR-3665 1 0 0
chr20:63865493|63865736 hsa-miR-3936 1 0 0
chr20:63865493|63865736 hsa-miR-4430 1 1 0
chr20:63865493|63865736 hsa-miR-4449 0 1 0
chr20:63865493|63865736 hsa-miR-3135b 1 1 0
chr20:63865493|63865736 hsa-miR-4467 1 0 0
chr20:63865493|63865736 hsa-miR-4479 1 0 0
chr20:63865493|63865736 hsa-miR-4488 1 0 0
chr20:63865493|63865736 hsa-miR-4507 1 0 0
chr20:63865493|63865736 hsa-miR-4516 1 0 0
chr20:63865493|63865736 hsa-miR-1587 1 0 0
chr20:63865493|63865736 hsa-miR-3960 1 0 0
chr20:63865493|63865736 hsa-miR-4634 1 0 0
chr20:63865493|63865736 hsa-miR-4651 1 1 0
chr20:63865493|63865736 hsa-miR-4656 1 0 0
chr20:63865493|63865736 hsa-miR-4706 1 0 0
chr20:63865493|63865736 hsa-miR-4721 1 0 0
chr20:63865493|63865736 hsa-miR-4734 1 0 0
chr20:63865493|63865736 hsa-miR-4739 1 0 0
chr20:63865493|63865736 hsa-miR-4767 1 1 0
chr20:63865493|63865736 hsa-miR-5090 1 0 0
chr20:63865493|63865736 hsa-miR-5192 1 0 0
chr20:63865493|63865736 hsa-miR-5572 1 0 0
chr20:63865493|63865736 hsa-miR-5693 0 1 0
chr20:63865493|63865736 hsa-miR-5739 1 0 0
chr20:63865493|63865736 hsa-miR-5787 1 0 0
chr20:63865493|63865736 hsa-miR-6081 1 1 0
chr20:63865493|63865736 hsa-miR-6090 1 1 0
chr20:63865493|63865736 hsa-miR-6132 1 1 0
chr20:63865493|63865736 hsa-miR-7704 1 0 0
chr20:63865493|63865736 hsa-miR-9899 0 1 0
chr20:63865493|63865736 hsa-miR-6840-3p 0 1 0
chr20:63865493|63865736 hsa-miR-1247-3p 0 1 0
chr20:63865493|63865736 hsa-miR-6765-5p 1 0 0
chr20:63865493|63865736 hsa-miR-671-5p 1 0 0
chr20:63865493|63865736 hsa-miR-3150a-3p 0 1 0
chr20:63865493|63865736 hsa-miR-6894-5p 1 0 0
chr20:63865493|63865736 hsa-miR-4687-3p 1 0 0
chr20:63865493|63865736 hsa-miR-1236-5p 1 0 0
chr20:63865493|63865736 hsa-miR-3622a-5p 1 0 0
chr20:63865493|63865736 hsa-miR-4786-5p 1 1 0
chr20:63865493|63865736 hsa-miR-6089 1 0 0
chr20:63865493|63865736 hsa-miR-6746-5p 1 0 0
chr20:63865493|63865736 hsa-miR-4709-3p 0 1 0
chr20:63865493|63865736 hsa-miR-4722-5p 1 0 0
chr20:63865493|63865736 hsa-miR-3677-5p 0 1 0
chr20:63865493|63865736 hsa-miR-6890-5p 1 0 0
chr20:63865493|63865736 hsa-miR-6820-5p 1 0 0
chr20:63865493|63865736 hsa-miR-6727-5p 1 0 0
chr20:63865493|63865736 hsa-miR-6716-5p 1 0 0
chr20:63865493|63865736 hsa-miR-6871-5p 1 0 0
chr20:63865493|63865736 hsa-miR-1292-5p 1 0 0
chr20:63865493|63865736 hsa-miR-3180-3p 1 0 0
chr20:63865493|63865736 hsa-miR-4697-3p 0 1 0
chr20:63865493|63865736 hsa-miR-6829-5p 1 0 0
chr20:63865493|63865736 hsa-miR-6732-5p 1 0 0
chr20:63865493|63865736 hsa-miR-6805-5p 1 0 0
chr20:63865493|63865736 hsa-miR-6827-5p 1 0 0
chr20:63865493|63865736 hsa-miR-6798-5p 1 0 0
chr20:63865493|63865736 hsa-miR-6782-5p 1 0 0
chr20:63865493|63865736 hsa-miR-6753-5p 0 1 0
chr20:63865493|63865736 hsa-miR-4690-5p 1 1 0
chr20:63865493|63865736 hsa-miR-92b-5p 1 0 0
chr20:63865493|63865736 hsa-miR-3648 0 1 0
chr20:63865493|63865736 hsa-miR-4787-5p 1 0 0
chr20:63865493|63865736 hsa-miR-149-3p 1 0 0
chr20:63865493|63865736 hsa-miR-6824-5p 1 0 0
chr20:63865493|63865736 hsa-miR-6789-5p 1 0 0
chr20:63865493|63865736 hsa-miR-4776-5p 1 0 0
chr20:63865493|63865736 hsa-miR-7112-5p 1 0 0
chr20:63865493|63865736 hsa-miR-1225-5p 1 0 0
chr20:63865493|63865736 hsa-miR-6499-5p 0 1 0
chr20:63865493|63865736 hsa-miR-744-5p 1 0 0
chr20:63865493|63865736 hsa-miR-7113-5p 0 1 0
chr20:63865493|63865736 hsa-miR-4746-5p 0 1 0
chr20:63865493|63865736 hsa-miR-2277-5p 1 1 0
chr20:63865493|63865736 hsa-miR-3177-3p 1 0 0
chr20:63865493|63865736 hsa-miR-10400-5p 1 0 0
chr20:63865493|63865736 hsa-miR-1207-5p 1 0 0
chr20:63865493|63865736 hsa-miR-4763-3p 1 1 0
chr20:63865493|63865736 hsa-miR-6769b-5p 1 0 0
chr20:63865493|63865736 hsa-miR-6787-5p 1 0 0
chr20:63865493|63865736 hsa-miR-6812-5p 1 0 0
chr20:63865493|63865736 hsa-miR-6816-5p 1 0 0
chr20:63865493|63865736 hsa-miR-6870-5p 1 0 0
chr20:63865493|63865736 hsa-miR-6775-5p 1 1 0
chr20:63865493|63865736 hsa-miR-1343-5p 1 0 0
chr20:63865493|63865736 hsa-miR-5001-5p 1 0 0
chr20:63865493|63865736 hsa-miR-6726-5p 1 1 0
chr20:63865493|63865736 hsa-miR-6737-5p 1 0 0
chr20:63865493|63865736 hsa-miR-6756-5p 1 1 0
chr20:63865493|63865736 hsa-miR-6819-5p 1 0 0
chr20:63865493|63865736 hsa-miR-1249-5p 1 0 0
chr20:63865493|63865736 hsa-miR-6722-3p 1 0 0
chr20:63865493|63865736 hsa-miR-6797-5p 1 0 0
chr20:63865493|63865736 hsa-miR-6808-5p 1 0 0
chr20:63865493|63865736 hsa-miR-6879-5p 1 1 0
chr20:63865493|63865736 hsa-miR-7111-5p 1 0 0
chr20:63865493|63865736 hsa-miR-3620-5p 1 0 0
chr20:63865493|63865736 hsa-miR-4728-5p 1 0 0
chr20:63865493|63865736 hsa-miR-5189-5p 1 0 0
chr20:63865493|63865736 hsa-miR-5196-5p 1 0 0
chr20:63865493|63865736 hsa-miR-6836-5p 1 1 0
chr20:63865493|63865736 hsa-miR-6862-5p 1 0 0
chr20:63865493|63865736 hsa-miR-10396a-5p 1 0 0
chr20:63865493|63865736 hsa-miR-1237-5p 1 0 0
chr20:63865493|63865736 hsa-miR-1909-3p 1 0 0
chr20:63865493|63865736 hsa-miR-328-5p 1 0 0
chr20:63865493|63865736 hsa-miR-4632-5p 1 0 0
chr20:63865493|63865736 hsa-miR-4649-5p 1 0 0
chr20:63865493|63865736 hsa-miR-4685-5p 0 1 0
chr20:63865493|63865736 hsa-miR-6729-5p 1 0 0
chr20:63865493|63865736 hsa-miR-6735-5p 1 0 0
chr20:63865493|63865736 hsa-miR-6794-5p 1 0 0
chr20:63865493|63865736 hsa-miR-6795-5p 1 1 0
chr20:63865493|63865736 hsa-miR-6846-5p 1 0 0
chr20:63865493|63865736 hsa-miR-6848-5p 1 1 0
chr20:63865493|63865736 hsa-miR-6858-5p 1 1 0
chr20:63865493|63865736 hsa-miR-6887-5p 1 0 0
chr20:63865493|63865736 hsa-miR-6885-5p 1 0 0
chr20:63865493|63865736 hsa-miR-939-5p 1 0 0
chr20:63865493|63865736 hsa-miR-10394-3p 1 0 0
chr20:63865493|63865736 hsa-miR-10396a-3p 0 1 0
chr20:63865493|63865736 hsa-miR-10396b-3p 0 1 0
chr20:63865493|63865736 hsa-miR-6731-5p 1 0 0
chr20:63865493|63865736 hsa-miR-6766-5p 1 0 0
chr20:63865493|63865736 hsa-miR-6785-5p 1 0 0
chr20:63865493|63865736 hsa-miR-5591-5p 0 1 0
chr20:63865493|63865736 hsa-miR-6724-5p 1 0 0
chr20:63865493|63865736 hsa-miR-6791-5p 0 1 0
chr20:63865493|63865736 hsa-miR-6822-5p 0 1 0
chr20:63865493|63865736 hsa-miR-6764-5p 0 1 0
chr20:63865493|63865736 hsa-miR-371a-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr20:63865493|63865736
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MGSLQPPSWSPLGPFRGVVPWRPPLLP
Nucleotide Sequence CTGGGCTCTCTCCAGCCGCCCTCCTGGTCTCCCCTGGGACCGTTCCGAGGTGTGGTTCCCTGGCGCCCGCCGTTGCTCCCGTAG
CircID chr20:63865493|63865736
ORF Type ORF2
Protein Length 70
Nucleotide Length 210
Protein Sequence MTSKLMMVVVCFLPAAQTASWALSSRPPGLPWDRSEVWFPGARRCSRSLGSVAPSRSRLCRPPRALLLLA
Nucleotide Sequence CTGACCTCGAAGCTTATGATGGTCGTGGTGTGTTTTTTGCCCGCGGCCCAGACCGCTTCCTGGGCTCTCTCCAGCCGCCCTCCTGGTCTCCCCTGGGACCGTTCCGAGGTGTGGTTCCCTGGCGCCCGCCGTTGCTCCCGTAGTTTGGGTTCTGTCGCTCCCAGCAGGTCTCGCTTATGCCGCCCACCCCGTGCCCTGCTCTTGCTTGCT
CircID chr20:63865493|63865736
ORF Type ORF3
Protein Length 42
Nucleotide Length 126
Protein Sequence MVSPGTVPRCGSLAPAVAPVVWVLSLPAGLAYAAHPVPCSCL
Nucleotide Sequence CTGGTCTCCCCTGGGACCGTTCCGAGGTGTGGTTCCCTGGCGCCCGCCGTTGCTCCCGTAGTTTGGGTTCTGTCGCTCCCAGCAGGTCTCGCTTATGCCGCCCACCCCGTGCCCTGCTCTTGCTTG
CircID chr20:63865493|63865736
ORF Type ORF4
Protein Length 28
Nucleotide Length 84
Protein Sequence MGRGQKTHHDHHKLRGQWPRELKRGRGV
Nucleotide Sequence CTGGGCCGCGGGCAAAAAACACACCACGACCATCATAAGCTTCGAGGTCAGTGGCCCCGGGAGCTGAAGAGGGGCCGCGGGGTG
CircID chr20:63865493|63865736
ORF Type ORF5
Protein Length 60
Nucleotide Length 183
Protein Sequence MLGATEPKLREQRRAPGNHTSERSQGRPGGRLERAQEAVWAAGKKHTTTIISFEVSGPGS
Nucleotide Sequence CTGCTGGGAGCGACAGAACCCAAACTACGGGAGCAACGGCGGGCGCCAGGGAACCACACCTCGGAACGGTCCCAGGGGAGACCAGGAGGGCGGCTGGAGAGAGCCCAGGAAGCGGTCTGGGCCGCGGGCAAAAAACACACCACGACCATCATAAGCTTCGAGGTCAGTGGCCCCGGGAGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab