CircRNA Information

General Information
circRNA Basic Information
CircID chr20:63875856|63882820
Strand +
CircType exon
Host Gene ENSG00000101150.16;
Algorism CIRI2;
Sequence CTCATGTCTCCAAGCTTCCTGCTGATGGCAGAGCCCACTGTGGACAGGGCAGCTGAAGTCTTCTGTCCTGCCTGTGAAAGAGTTTCCTGAGTCTTCTTGTAGAGGTCTGACTGGGTCACTTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:63875856|63882820 hsa-miR-22-5p 0 0 1
chr20:63875856|63882820 hsa-miR-22-3p 0 0 1
chr20:63875856|63882820 hsa-miR-27a-5p 0 0 1
chr20:63875856|63882820 hsa-miR-27a-3p 0 0 1
chr20:63875856|63882820 hsa-miR-214-5p 0 0 1
chr20:63875856|63882820 hsa-miR-214-3p 0 0 1
chr20:63875856|63882820 hsa-miR-27b-5p 0 0 1
chr20:63875856|63882820 hsa-miR-27b-3p 0 0 1
chr20:63875856|63882820 hsa-miR-432-5p 0 0 1
chr20:63875856|63882820 hsa-miR-432-3p 0 0 1
chr20:63875856|63882820 hsa-miR-510-5p 0 0 1
chr20:63875856|63882820 hsa-miR-510-3p 0 0 1
chr20:63875856|63882820 hsa-miR-620 0 0 1
chr20:63875856|63882820 hsa-miR-874-5p 0 0 1
chr20:63875856|63882820 hsa-miR-874-3p 0 0 1
chr20:63875856|63882820 hsa-miR-873-5p 0 0 1
chr20:63875856|63882820 hsa-miR-873-3p 0 0 1
chr20:63875856|63882820 hsa-miR-760 0 1 1
chr20:63875856|63882820 hsa-miR-922 0 0 1
chr20:63875856|63882820 hsa-miR-940 0 0 1
chr20:63875856|63882820 hsa-miR-1286 0 1 1
chr20:63875856|63882820 hsa-miR-1270 0 0 1
chr20:63875856|63882820 hsa-miR-1283 0 0 1
chr20:63875856|63882820 hsa-miR-146b-3p 0 0 1
chr20:63875856|63882820 hsa-miR-339-5p 0 1 1
chr20:63875856|63882820 hsa-miR-1207-3p 0 0 1
chr20:63875856|63882820 hsa-miR-513a-5p 0 1 1
chr20:63875856|63882820 hsa-miR-128 0 0 1
chr20:63875856|63882820 hsa-miR-220c 0 0 1
chr20:63875856|63882820 hsa-miR-4291 0 1 0
chr20:63875856|63882820 hsa-miR-4436a 0 1 0
chr20:63875856|63882820 hsa-miR-4514 0 1 0
chr20:63875856|63882820 hsa-miR-4538 0 1 0
chr20:63875856|63882820 hsa-miR-6165 0 1 0
chr20:63875856|63882820 hsa-miR-3194-3p 0 1 0
chr20:63875856|63882820 hsa-miR-3677-3p 1 0 0
chr20:63875856|63882820 hsa-miR-194-3p 0 1 0
chr20:63875856|63882820 hsa-miR-7112-5p 1 1 0
chr20:63875856|63882820 hsa-miR-216a-3p 0 1 0
chr20:63875856|63882820 hsa-miR-4796-3p 0 1 0
chr20:63875856|63882820 hsa-miR-6808-5p 0 1 0
chr20:63875856|63882820 hsa-miR-3130-5p 0 1 0
chr20:63875856|63882820 hsa-miR-6817-5p 1 1 0
chr20:63875856|63882820 hsa-miR-3619-5p 0 1 0
chr20:63875856|63882820 hsa-miR-519a-2-5p 0 1 0
chr20:63875856|63882820 hsa-miR-520b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr20:63875856|63882820
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MSPSFLLMAEPTVDRAAEVFCPACERVS
Nucleotide Sequence ATGTCTCCAAGCTTCCTGCTGATGGCAGAGCCCACTGTGGACAGGGCAGCTGAAGTCTTCTGTCCTGCCTGTGAAAGAGTTTCCTGA
CircID chr20:63875856|63882820
ORF Type ORF2
Protein Length 28
Nucleotide Length 84
Protein Sequence MWTGQLKSSVLPVKEFPESSCRGLTGSL
Nucleotide Sequence CTGTGGACAGGGCAGCTGAAGTCTTCTGTCCTGCCTGTGAAAGAGTTTCCTGAGTCTTCTTGTAGAGGTCTGACTGGGTCACTT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab