CircRNA Information

General Information
circRNA Basic Information
CircID chr20:63995056|63995398
Strand -
CircType exon
Host Gene ENSG00000101161.7;
Algorism CIRI2;
Sequence CGGAGAGAACCATACCTCAGTGGATCCCCGACAAACTGTGAGCTTCCAAAAAAGGGCACATGTGGCCCATTTAGTCCTGTTAGATCAGTGGCAGGAATGGTGGGTGGTGTTGGATTCAATGCTTCTGCAGGTCATGGCTATGCTGTGGCCGAGTCTGTCTGCACAGCTGTGCATATGTCAGGCCACTGGGGAAGTATTTCAGAGAGTAAATTTCTTGGGCATGCAGTGCAAACCGTTGTTTTATTCTTGCCTTTCCTCTCTTCCCCTCCAGCAATTTGGAGGTCTTAACACACCCTATCCAGGTGGACTAAACACTCCATACCCAGGTGGAATGACGCCAGGA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:63995056|63995398 hsa-let-7b-5p 0 0 1
chr20:63995056|63995398 hsa-let-7b-3p 0 0 1
chr20:63995056|63995398 hsa-let-7c-5p 0 0 1
chr20:63995056|63995398 hsa-let-7c-3p 0 0 1
chr20:63995056|63995398 hsa-let-7d-5p 0 0 1
chr20:63995056|63995398 hsa-let-7d-3p 0 0 1
chr20:63995056|63995398 hsa-let-7e-5p 0 0 1
chr20:63995056|63995398 hsa-let-7e-3p 0 0 1
chr20:63995056|63995398 hsa-miR-27a-5p 0 0 1
chr20:63995056|63995398 hsa-miR-27a-3p 0 0 1
chr20:63995056|63995398 hsa-miR-31-5p 0 0 1
chr20:63995056|63995398 hsa-miR-31-3p 0 0 1
chr20:63995056|63995398 hsa-miR-98-5p 0 0 1
chr20:63995056|63995398 hsa-miR-98-3p 0 0 1
chr20:63995056|63995398 hsa-miR-208a-5p 0 0 1
chr20:63995056|63995398 hsa-miR-208a-3p 0 0 1
chr20:63995056|63995398 hsa-miR-217-5p 0 0 1
chr20:63995056|63995398 hsa-miR-217-3p 0 0 1
chr20:63995056|63995398 hsa-let-7g-5p 0 0 1
chr20:63995056|63995398 hsa-let-7g-3p 0 0 1
chr20:63995056|63995398 hsa-let-7i-5p 0 0 1
chr20:63995056|63995398 hsa-let-7i-3p 0 0 1
chr20:63995056|63995398 hsa-miR-27b-5p 0 0 1
chr20:63995056|63995398 hsa-miR-27b-3p 0 0 1
chr20:63995056|63995398 hsa-miR-122-5p 0 0 1
chr20:63995056|63995398 hsa-miR-122-3p 0 0 1
chr20:63995056|63995398 hsa-miR-202-5p 0 0 1
chr20:63995056|63995398 hsa-miR-202-3p 0 0 1
chr20:63995056|63995398 hsa-miR-522-5p 0 0 1
chr20:63995056|63995398 hsa-miR-522-3p 0 0 1
chr20:63995056|63995398 hsa-miR-507 0 0 1
chr20:63995056|63995398 hsa-miR-557 0 0 1
chr20:63995056|63995398 hsa-miR-584-5p 0 0 1
chr20:63995056|63995398 hsa-miR-584-3p 0 0 1
chr20:63995056|63995398 hsa-miR-619-5p 0 0 1
chr20:63995056|63995398 hsa-miR-619-3p 0 0 1
chr20:63995056|63995398 hsa-miR-631 0 0 1
chr20:63995056|63995398 hsa-miR-298 0 1 1
chr20:63995056|63995398 hsa-miR-208b-5p 0 0 1
chr20:63995056|63995398 hsa-miR-208b-3p 0 0 1
chr20:63995056|63995398 hsa-miR-938 0 0 1
chr20:63995056|63995398 hsa-miR-1287-5p 0 0 1
chr20:63995056|63995398 hsa-miR-1287-3p 0 0 1
chr20:63995056|63995398 hsa-miR-302f 0 0 1
chr20:63995056|63995398 hsa-miR-1324 0 1 1
chr20:63995056|63995398 hsa-miR-671-5p 0 0 1
chr20:63995056|63995398 hsa-miR-129-5p 0 0 1
chr20:63995056|63995398 hsa-miR-542-5p 0 0 1
chr20:63995056|63995398 hsa-miR-455-5p 0 1 1
chr20:63995056|63995398 hsa-miR-502-3p 0 0 1
chr20:63995056|63995398 hsa-miR-501-3p 0 0 1
chr20:63995056|63995398 hsa-miR-220b 0 0 1
chr20:63995056|63995398 hsa-miR-128 0 0 1
chr20:63995056|63995398 hsa-let-7a 0 0 1
chr20:63995056|63995398 hsa-let-7f 0 0 1
chr20:63995056|63995398 hsa-miR-499-5p 0 0 1
chr20:63995056|63995398 hsa-miR-765 1 1 0
chr20:63995056|63995398 hsa-miR-4252 0 1 0
chr20:63995056|63995398 hsa-miR-4271 1 1 0
chr20:63995056|63995398 hsa-miR-3659 0 1 0
chr20:63995056|63995398 hsa-miR-1268b 1 0 0
chr20:63995056|63995398 hsa-miR-3135b 0 1 0
chr20:63995056|63995398 hsa-miR-4644 0 1 0
chr20:63995056|63995398 hsa-miR-4739 1 0 0
chr20:63995056|63995398 hsa-miR-4759 0 1 0
chr20:63995056|63995398 hsa-miR-5693 0 1 0
chr20:63995056|63995398 hsa-miR-6077 0 1 0
chr20:63995056|63995398 hsa-miR-6125 1 0 0
chr20:63995056|63995398 hsa-miR-8085 1 0 0
chr20:63995056|63995398 hsa-miR-146a-3p 0 1 0
chr20:63995056|63995398 hsa-miR-4700-3p 0 1 0
chr20:63995056|63995398 hsa-miR-4665-3p 1 1 0
chr20:63995056|63995398 hsa-miR-7106-5p 1 0 0
chr20:63995056|63995398 hsa-miR-7114-5p 1 0 0
chr20:63995056|63995398 hsa-miR-6515-5p 0 1 0
chr20:63995056|63995398 hsa-miR-769-5p 0 1 0
chr20:63995056|63995398 hsa-miR-3677-5p 0 1 0
chr20:63995056|63995398 hsa-miR-197-5p 1 0 0
chr20:63995056|63995398 hsa-miR-6716-5p 1 0 0
chr20:63995056|63995398 hsa-miR-6514-5p 1 1 0
chr20:63995056|63995398 hsa-miR-6765-3p 0 1 0
chr20:63995056|63995398 hsa-miR-7109-5p 1 0 0
chr20:63995056|63995398 hsa-miR-1229-5p 1 0 0
chr20:63995056|63995398 hsa-miR-490-3p 1 0 0
chr20:63995056|63995398 hsa-miR-423-5p 1 0 0
chr20:63995056|63995398 hsa-miR-3074-5p 0 1 0
chr20:63995056|63995398 hsa-miR-28-5p 1 0 0
chr20:63995056|63995398 hsa-miR-4717-5p 0 1 0
chr20:63995056|63995398 hsa-miR-6812-5p 1 0 0
chr20:63995056|63995398 hsa-miR-6726-5p 1 0 0
chr20:63995056|63995398 hsa-miR-6737-5p 1 0 0
chr20:63995056|63995398 hsa-miR-6752-5p 1 0 0
chr20:63995056|63995398 hsa-miR-7107-5p 1 0 0
chr20:63995056|63995398 hsa-miR-7110-5p 1 0 0
chr20:63995056|63995398 hsa-miR-1249-5p 1 0 0
chr20:63995056|63995398 hsa-miR-6779-5p 1 0 0
chr20:63995056|63995398 hsa-miR-6797-5p 1 0 0
chr20:63995056|63995398 hsa-miR-7111-5p 1 1 0
chr20:63995056|63995398 hsa-miR-4728-5p 1 0 0
chr20:63995056|63995398 hsa-miR-6780b-5p 1 1 0
chr20:63995056|63995398 hsa-miR-328-5p 1 0 0
chr20:63995056|63995398 hsa-miR-6795-5p 1 1 0
chr20:63995056|63995398 hsa-miR-6887-5p 1 0 0
chr20:63995056|63995398 hsa-miR-6889-5p 1 0 0
chr20:63995056|63995398 hsa-miR-3085-5p 1 0 0
chr20:63995056|63995398 hsa-miR-6758-5p 0 1 0
chr20:63995056|63995398 hsa-miR-6511a-3p 0 1 0
chr20:63995056|63995398 hsa-miR-515-3p 1 0 0
chr20:63995056|63995398 hsa-miR-122b-3p 0 1 0
chr20:63995056|63995398 hsa-miR-4699-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr20:63995056|63995398
ORF Type ORF1
Protein Length 63
Nucleotide Length 192
Protein Sequence MVGGVGFNASAGHGYAVAESVCTAVHMSGHWGSISESKFLGHAVQTVVLFLPFLSSPPAIWRS
Nucleotide Sequence ATGGTGGGTGGTGTTGGATTCAATGCTTCTGCAGGTCATGGCTATGCTGTGGCCGAGTCTGTCTGCACAGCTGTGCATATGTCAGGCCACTGGGGAAGTATTTCAGAGAGTAAATTTCTTGGGCATGCAGTGCAAACCGTTGTTTTATTCTTGCCTTTCCTCTCTTCCCCTCCAGCAATTTGGAGGTCTTAA
CircID chr20:63995056|63995398
ORF Type ORF2
Protein Length 89
Nucleotide Length 267
Protein Sequence MLDQWQEWWVVLDSMLLQVMAMLWPSLSAQLCICQATGEVFQRVNFLGMQCKPLFYSCLSSLPLQQFGGLNTPYPGGLNTPYPGGMTPG
Nucleotide Sequence CTGTTAGATCAGTGGCAGGAATGGTGGGTGGTGTTGGATTCAATGCTTCTGCAGGTCATGGCTATGCTGTGGCCGAGTCTGTCTGCACAGCTGTGCATATGTCAGGCCACTGGGGAAGTATTTCAGAGAGTAAATTTCTTGGGCATGCAGTGCAAACCGTTGTTTTATTCTTGCCTTTCCTCTCTTCCCCTCCAGCAATTTGGAGGTCTTAACACACCCTATCCAGGTGGACTAAACACTCCATACCCAGGTGGAATGACGCCAGGA
CircID chr20:63995056|63995398
ORF Type ORF3
Protein Length 52
Nucleotide Length 159
Protein Sequence MLEGKRGKARIKQRFALHAQEIYSLKYFPSGLTYAQLCRQTRPQHSHDLQKH
Nucleotide Sequence TTGCTGGAGGGGAAGAGAGGAAAGGCAAGAATAAAACAACGGTTTGCACTGCATGCCCAAGAAATTTACTCTCTGAAATACTTCCCCAGTGGCCTGACATATGCACAGCTGTGCAGACAGACTCGGCCACAGCATAGCCATGACCTGCAGAAGCATTGA
CircID chr20:63995056|63995398
ORF Type ORF4
Protein Length 29
Nucleotide Length 90
Protein Sequence MHSCADRLGHSIAMTCRSIESNTTHHSCH
Nucleotide Sequence ATGCACAGCTGTGCAGACAGACTCGGCCACAGCATAGCCATGACCTGCAGAAGCATTGAATCCAACACCACCCACCATTCCTGCCACTGA
CircID chr20:63995056|63995398
ORF Type ORF5
Protein Length 39
Nucleotide Length 117
Protein Sequence MNPTPPTIPATDLTGLNGPHVPFFGSSQFVGDPLRYGSL
Nucleotide Sequence TTGAATCCAACACCACCCACCATTCCTGCCACTGATCTAACAGGACTAAATGGGCCACATGTGCCCTTTTTTGGAAGCTCACAGTTTGTCGGGGATCCACTGAGGTATGGTTCTCTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab