CircRNA Information

General Information
circRNA Basic Information
CircID chr20:7982283|7982390
Strand -
CircType exon
Host Gene ENSG00000125827.7;
Algorism CIRI2;
Sequence GCTGCCTCAAGGAGTCTTCCACCACCTCTGTGTCAGCTGGGCAGGGTTGCTCAGAGATGCCTTCTTCAGCCTCCTCAGGCTCTACTTCCTCCCGGGTCACACCGTCCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:7982283|7982390 hsa-miR-1304-5p 0 0 1
chr20:7982283|7982390 hsa-miR-1304-3p 0 0 1
chr20:7982283|7982390 hsa-miR-1827 0 0 1
chr20:7982283|7982390 hsa-miR-485-5p 0 0 1
chr20:7982283|7982390 hsa-miR-7 0 0 1
chr20:7982283|7982390 hsa-miR-608 1 0 0
chr20:7982283|7982390 hsa-miR-661 1 0 0
chr20:7982283|7982390 hsa-miR-663b 1 0 0
chr20:7982283|7982390 hsa-miR-3185 1 1 0
chr20:7982283|7982390 hsa-miR-4257 1 1 0
chr20:7982283|7982390 hsa-miR-3612 0 1 0
chr20:7982283|7982390 hsa-miR-3921 0 1 0
chr20:7982283|7982390 hsa-miR-4449 1 0 0
chr20:7982283|7982390 hsa-miR-4451 0 1 0
chr20:7982283|7982390 hsa-miR-4462 1 0 0
chr20:7982283|7982390 hsa-miR-4501 0 1 0
chr20:7982283|7982390 hsa-miR-4531 0 1 0
chr20:7982283|7982390 hsa-miR-4656 1 0 0
chr20:7982283|7982390 hsa-miR-4689 0 1 0
chr20:7982283|7982390 hsa-miR-4739 1 0 0
chr20:7982283|7982390 hsa-miR-6127 1 0 0
chr20:7982283|7982390 hsa-miR-6134 0 1 0
chr20:7982283|7982390 hsa-miR-12115 1 1 0
chr20:7982283|7982390 hsa-miR-1247-3p 0 1 0
chr20:7982283|7982390 hsa-miR-7106-5p 1 1 0
chr20:7982283|7982390 hsa-miR-6894-5p 1 0 0
chr20:7982283|7982390 hsa-miR-6799-5p 1 0 0
chr20:7982283|7982390 hsa-miR-766-5p 0 1 0
chr20:7982283|7982390 hsa-miR-7851-3p 1 0 0
chr20:7982283|7982390 hsa-miR-3192-5p 1 0 0
chr20:7982283|7982390 hsa-miR-6880-5p 1 0 0
chr20:7982283|7982390 hsa-miR-7847-3p 1 0 0
chr20:7982283|7982390 hsa-miR-4695-5p 1 1 0
chr20:7982283|7982390 hsa-miR-6746-5p 1 0 0
chr20:7982283|7982390 hsa-miR-6798-5p 1 0 0
chr20:7982283|7982390 hsa-miR-6770-5p 1 0 0
chr20:7982283|7982390 hsa-miR-6782-5p 1 0 0
chr20:7982283|7982390 hsa-miR-6771-5p 1 0 0
chr20:7982283|7982390 hsa-miR-4732-5p 0 1 0
chr20:7982283|7982390 hsa-miR-6749-5p 1 0 0
chr20:7982283|7982390 hsa-miR-149-3p 1 0 0
chr20:7982283|7982390 hsa-miR-6717-5p 1 0 0
chr20:7982283|7982390 hsa-miR-3616-3p 0 1 0
chr20:7982283|7982390 hsa-miR-3162-5p 1 0 0
chr20:7982283|7982390 hsa-miR-7846-3p 1 0 0
chr20:7982283|7982390 hsa-miR-605-3p 0 1 0
chr20:7982283|7982390 hsa-miR-6732-3p 0 1 0
chr20:7982283|7982390 hsa-miR-6778-5p 1 0 0
chr20:7982283|7982390 hsa-miR-6812-5p 1 0 0
chr20:7982283|7982390 hsa-miR-6752-5p 1 0 0
chr20:7982283|7982390 hsa-miR-6851-5p 1 0 0
chr20:7982283|7982390 hsa-miR-7110-5p 1 0 0
chr20:7982283|7982390 hsa-miR-6779-5p 1 0 0
chr20:7982283|7982390 hsa-miR-6780a-5p 1 0 0
chr20:7982283|7982390 hsa-miR-6797-5p 1 1 0
chr20:7982283|7982390 hsa-miR-328-5p 1 0 0
chr20:7982283|7982390 hsa-miR-4726-5p 1 0 0
chr20:7982283|7982390 hsa-miR-6795-5p 1 0 0
chr20:7982283|7982390 hsa-miR-6846-5p 1 1 0
chr20:7982283|7982390 hsa-miR-6858-5p 0 1 0
chr20:7982283|7982390 hsa-miR-6831-5p 1 1 0
chr20:7982283|7982390 hsa-miR-4646-5p 1 0 0
chr20:7982283|7982390 hsa-miR-4667-5p 0 1 0
chr20:7982283|7982390 hsa-miR-550a-5p 1 0 0
chr20:7982283|7982390 hsa-miR-6884-5p 0 1 0
chr20:7982283|7982390 hsa-miR-4653-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr20:7982283|7982390
ORF Type ORF1
Protein Length 27
Nucleotide Length 81
Protein Sequence MCQLGRVAQRCLLQPPQALLPPGSHRP
Nucleotide Sequence CTGTGTCAGCTGGGCAGGGTTGCTCAGAGATGCCTTCTTCAGCCTCCTCAGGCTCTACTTCCTCCCGGGTCACACCGTCCT
CircID chr20:7982283|7982390
ORF Type ORF2
Protein Length 35
Nucleotide Length 105
Protein Sequence LPQGVFHHLCVSWAGLLRDAFFSLLRLYFLPGHTV
Nucleotide Sequence CTGCCTCAAGGAGTCTTCCACCACCTCTGTGTCAGCTGGGCAGGGTTGCTCAGAGATGCCTTCTTCAGCCTCCTCAGGCTCTACTTCCTCCCGGGTCACACCGTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab