CircRNA Information

General Information
circRNA Basic Information
CircID chr20:9333317|9333485
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence AACCATAAAAACTCTTTTCCTGCAACCCCTCAAGCTCTCTCTAGCATCAGGGCCTTTGCACTTGCAGTTCCTCTTGCTCAGAAGTCTCTTTCTACTGCCCTTGGTGCATCAGGCTCCTCTTCATTCTACAGACCTTGTCTTCATTATCCCCTCCTCAGAGAGGCTCTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr20:9333317|9333485 hsa-miR-19a-5p 0 0 1
chr20:9333317|9333485 hsa-miR-19a-3p 0 0 1
chr20:9333317|9333485 hsa-miR-130a-5p 0 0 1
chr20:9333317|9333485 hsa-miR-130a-3p 0 0 1
chr20:9333317|9333485 hsa-miR-301a-5p 0 0 1
chr20:9333317|9333485 hsa-miR-301a-3p 0 0 1
chr20:9333317|9333485 hsa-miR-130b-5p 0 0 1
chr20:9333317|9333485 hsa-miR-130b-3p 0 0 1
chr20:9333317|9333485 hsa-miR-527 0 0 1
chr20:9333317|9333485 hsa-miR-584-5p 0 0 1
chr20:9333317|9333485 hsa-miR-584-3p 0 0 1
chr20:9333317|9333485 hsa-miR-624-5p 0 0 1
chr20:9333317|9333485 hsa-miR-624-3p 0 0 1
chr20:9333317|9333485 hsa-miR-454-5p 0 0 1
chr20:9333317|9333485 hsa-miR-454-3p 0 0 1
chr20:9333317|9333485 hsa-miR-301b-5p 0 0 1
chr20:9333317|9333485 hsa-miR-301b-3p 0 0 1
chr20:9333317|9333485 hsa-miR-936 0 1 1
chr20:9333317|9333485 hsa-miR-1286 0 0 1
chr20:9333317|9333485 hsa-miR-1291 0 1 1
chr20:9333317|9333485 hsa-miR-767-5p 0 0 1
chr20:9333317|9333485 hsa-miR-423-5p 1 0 1
chr20:9333317|9333485 hsa-miR-502-3p 0 1 1
chr20:9333317|9333485 hsa-miR-501-3p 0 1 1
chr20:9333317|9333485 hsa-miR-519b-3p 0 0 1
chr20:9333317|9333485 hsa-miR-519c-3p 0 0 1
chr20:9333317|9333485 hsa-miR-518a-5p 0 0 1
chr20:9333317|9333485 hsa-miR-19b 0 0 1
chr20:9333317|9333485 hsa-miR-1201 0 0 1
chr20:9333317|9333485 hsa-miR-519a 0 0 1
chr20:9333317|9333485 hsa-miR-658 1 0 0
chr20:9333317|9333485 hsa-miR-920 1 0 0
chr20:9333317|9333485 hsa-miR-3131 1 0 0
chr20:9333317|9333485 hsa-miR-3137 1 0 0
chr20:9333317|9333485 hsa-miR-3141 1 0 0
chr20:9333317|9333485 hsa-miR-3154 1 0 0
chr20:9333317|9333485 hsa-miR-4303 0 1 0
chr20:9333317|9333485 hsa-miR-4311 0 1 0
chr20:9333317|9333485 hsa-miR-4271 1 0 0
chr20:9333317|9333485 hsa-miR-3652 1 0 0
chr20:9333317|9333485 hsa-miR-3666 0 1 0
chr20:9333317|9333485 hsa-miR-4428 1 0 0
chr20:9333317|9333485 hsa-miR-4430 1 0 0
chr20:9333317|9333485 hsa-miR-4450 1 0 0
chr20:9333317|9333485 hsa-miR-4451 1 0 0
chr20:9333317|9333485 hsa-miR-3135b 1 0 0
chr20:9333317|9333485 hsa-miR-4489 1 0 0
chr20:9333317|9333485 hsa-miR-4510 1 0 0
chr20:9333317|9333485 hsa-miR-4651 1 0 0
chr20:9333317|9333485 hsa-miR-4688 1 0 0
chr20:9333317|9333485 hsa-miR-4689 1 1 0
chr20:9333317|9333485 hsa-miR-4721 1 0 0
chr20:9333317|9333485 hsa-miR-4779 1 1 0
chr20:9333317|9333485 hsa-miR-5194 1 1 0
chr20:9333317|9333485 hsa-miR-5739 1 0 0
chr20:9333317|9333485 hsa-miR-6085 1 0 0
chr20:9333317|9333485 hsa-miR-6127 1 0 0
chr20:9333317|9333485 hsa-miR-6129 1 0 0
chr20:9333317|9333485 hsa-miR-6130 1 0 0
chr20:9333317|9333485 hsa-miR-6133 1 0 0
chr20:9333317|9333485 hsa-miR-8059 0 1 0
chr20:9333317|9333485 hsa-miR-8085 1 0 0
chr20:9333317|9333485 hsa-miR-8089 1 0 0
chr20:9333317|9333485 hsa-miR-12119 1 1 0
chr20:9333317|9333485 hsa-miR-4433b-3p 1 0 0
chr20:9333317|9333485 hsa-miR-6734-5p 1 1 0
chr20:9333317|9333485 hsa-miR-6809-5p 1 0 0
chr20:9333317|9333485 hsa-miR-6765-5p 1 0 0
chr20:9333317|9333485 hsa-miR-6825-5p 1 0 0
chr20:9333317|9333485 hsa-miR-6894-5p 1 0 0
chr20:9333317|9333485 hsa-miR-6799-5p 1 0 0
chr20:9333317|9333485 hsa-miR-6510-5p 1 0 0
chr20:9333317|9333485 hsa-miR-5187-5p 1 0 0
chr20:9333317|9333485 hsa-miR-4786-5p 1 0 0
chr20:9333317|9333485 hsa-miR-7114-5p 1 0 0
chr20:9333317|9333485 hsa-miR-4709-3p 1 1 0
chr20:9333317|9333485 hsa-miR-4722-5p 1 0 0
chr20:9333317|9333485 hsa-miR-7154-3p 1 0 0
chr20:9333317|9333485 hsa-miR-6721-5p 1 0 0
chr20:9333317|9333485 hsa-miR-3605-5p 1 0 0
chr20:9333317|9333485 hsa-miR-6796-5p 1 0 0
chr20:9333317|9333485 hsa-miR-6732-5p 1 0 0
chr20:9333317|9333485 hsa-miR-6827-5p 1 0 0
chr20:9333317|9333485 hsa-miR-6760-5p 1 0 0
chr20:9333317|9333485 hsa-miR-6881-5p 1 0 0
chr20:9333317|9333485 hsa-miR-6782-5p 1 0 0
chr20:9333317|9333485 hsa-miR-6835-5p 1 0 0
chr20:9333317|9333485 hsa-miR-7109-5p 1 0 0
chr20:9333317|9333485 hsa-miR-1226-5p 1 0 0
chr20:9333317|9333485 hsa-miR-1229-5p 1 0 0
chr20:9333317|9333485 hsa-miR-193b-5p 1 0 0
chr20:9333317|9333485 hsa-miR-3691-5p 1 0 0
chr20:9333317|9333485 hsa-miR-1908-5p 1 0 0
chr20:9333317|9333485 hsa-miR-4650-3p 0 1 0
chr20:9333317|9333485 hsa-miR-149-3p 1 0 0
chr20:9333317|9333485 hsa-miR-3616-3p 1 0 0
chr20:9333317|9333485 hsa-miR-2276-3p 0 1 0
chr20:9333317|9333485 hsa-miR-3158-3p 1 0 0
chr20:9333317|9333485 hsa-miR-493-3p 1 0 0
chr20:9333317|9333485 hsa-miR-4763-3p 1 0 0
chr20:9333317|9333485 hsa-miR-6816-5p 1 0 0
chr20:9333317|9333485 hsa-miR-1343-5p 1 0 0
chr20:9333317|9333485 hsa-miR-6726-5p 1 0 0
chr20:9333317|9333485 hsa-miR-6756-5p 1 0 0
chr20:9333317|9333485 hsa-miR-11181-3p 1 0 0
chr20:9333317|9333485 hsa-miR-1249-5p 1 0 0
chr20:9333317|9333485 hsa-miR-6779-5p 1 0 0
chr20:9333317|9333485 hsa-miR-6780a-5p 1 0 0
chr20:9333317|9333485 hsa-miR-6797-5p 1 0 0
chr20:9333317|9333485 hsa-miR-6875-5p 1 0 0
chr20:9333317|9333485 hsa-miR-6879-5p 1 1 0
chr20:9333317|9333485 hsa-miR-7111-5p 1 0 0
chr20:9333317|9333485 hsa-miR-4728-5p 1 1 0
chr20:9333317|9333485 hsa-miR-5196-5p 1 0 0
chr20:9333317|9333485 hsa-miR-6780b-5p 1 0 0
chr20:9333317|9333485 hsa-miR-328-5p 1 0 0
chr20:9333317|9333485 hsa-miR-4632-5p 1 0 0
chr20:9333317|9333485 hsa-miR-4726-5p 1 0 0
chr20:9333317|9333485 hsa-miR-6735-5p 1 1 0
chr20:9333317|9333485 hsa-miR-6738-5p 1 1 0
chr20:9333317|9333485 hsa-miR-6795-5p 1 0 0
chr20:9333317|9333485 hsa-miR-6846-5p 1 0 0
chr20:9333317|9333485 hsa-miR-6858-5p 1 1 0
chr20:9333317|9333485 hsa-miR-6883-5p 1 0 0
chr20:9333317|9333485 hsa-miR-6887-5p 1 1 0
chr20:9333317|9333485 hsa-miR-4436b-3p 1 1 0
chr20:9333317|9333485 hsa-miR-6831-5p 1 0 0
chr20:9333317|9333485 hsa-miR-939-5p 1 1 0
chr20:9333317|9333485 hsa-miR-6511b-5p 1 0 0
chr20:9333317|9333485 hsa-miR-6731-5p 1 0 0
chr20:9333317|9333485 hsa-miR-6758-5p 1 0 0
chr20:9333317|9333485 hsa-miR-6856-5p 1 0 0
chr20:9333317|9333485 hsa-miR-1914-3p 1 0 0
chr20:9333317|9333485 hsa-miR-4700-5p 1 0 0
chr20:9333317|9333485 hsa-miR-6891-5p 1 0 0
chr20:9333317|9333485 hsa-miR-6785-5p 1 0 0
chr20:9333317|9333485 hsa-miR-3184-5p 1 0 0
chr20:9333317|9333485 hsa-miR-6823-3p 0 1 0
chr20:9333317|9333485 hsa-miR-6859-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr20:9333317|9333485
ORF Type ORF1
Protein Length 50
Nucleotide Length 150
Protein Sequence MQPLKLSLASGPLHLQFLLLRSLFLLPLVHQAPLHSTDLVFIIPSSERLS
Nucleotide Sequence CTGCAACCCCTCAAGCTCTCTCTAGCATCAGGGCCTTTGCACTTGCAGTTCCTCTTGCTCAGAAGTCTCTTTCTACTGCCCTTGGTGCATCAGGCTCCTCTTCATTCTACAGACCTTGTCTTCATTATCCCCTCCTCAGAGAGGCTCTCC
CircID chr20:9333317|9333485
ORF Type ORF2
Protein Length 27
Nucleotide Length 81
Protein Sequence MSKRNCKCKGPDARESLRGCRKRVFMV
Nucleotide Sequence CTGAGCAAGAGGAACTGCAAGTGCAAAGGCCCTGATGCTAGAGAGAGCTTGAGGGGTTGCAGGAAAAGAGTTTTTATGGTT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab