CircRNA Information

General Information
circRNA Basic Information
CircID chr21:33263648|33263829
Strand -
CircType exon
Host Gene ENSG00000159110.18;
Algorism CIRI2;
Sequence CTATGCACATTCCCAGTATGGGGACCATAGTATCATTCAGTGCATTGTTTACATATTCAAAGTGGTGCACTTTGAAGGAAGCACATGTGCACCTTTCCTTTACACTAATGCACTTAGGATGTTTCTGCATCATGTCTACCAGGGAGCAGGGTTCCCCACAGTTTCAGAGGTGGTCCAGGACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr21:33263648|33263829 hsa-miR-17-5p 0 0 1
chr21:33263648|33263829 hsa-miR-17-3p 0 0 1
chr21:33263648|33263829 hsa-miR-18a-5p 0 0 1
chr21:33263648|33263829 hsa-miR-18a-3p 0 0 1
chr21:33263648|33263829 hsa-miR-20a-5p 0 0 1
chr21:33263648|33263829 hsa-miR-20a-3p 0 0 1
chr21:33263648|33263829 hsa-miR-30a-5p 0 0 1
chr21:33263648|33263829 hsa-miR-30a-3p 0 0 1
chr21:33263648|33263829 hsa-miR-93-5p 0 0 1
chr21:33263648|33263829 hsa-miR-93-3p 0 0 1
chr21:33263648|33263829 hsa-miR-106a-5p 0 0 1
chr21:33263648|33263829 hsa-miR-106a-3p 0 0 1
chr21:33263648|33263829 hsa-miR-30d-5p 0 0 1
chr21:33263648|33263829 hsa-miR-30d-3p 0 0 1
chr21:33263648|33263829 hsa-miR-205-5p 0 0 1
chr21:33263648|33263829 hsa-miR-205-3p 0 0 1
chr21:33263648|33263829 hsa-miR-30b-5p 0 0 1
chr21:33263648|33263829 hsa-miR-30b-3p 0 0 1
chr21:33263648|33263829 hsa-miR-206 0 0 1
chr21:33263648|33263829 hsa-miR-106b-5p 0 0 1
chr21:33263648|33263829 hsa-miR-106b-3p 0 0 1
chr21:33263648|33263829 hsa-miR-302a-5p 0 0 1
chr21:33263648|33263829 hsa-miR-302a-3p 0 0 1
chr21:33263648|33263829 hsa-miR-30e-5p 0 0 1
chr21:33263648|33263829 hsa-miR-30e-3p 0 0 1
chr21:33263648|33263829 hsa-miR-302b-5p 0 0 1
chr21:33263648|33263829 hsa-miR-302b-3p 0 0 1
chr21:33263648|33263829 hsa-miR-302c-5p 0 0 1
chr21:33263648|33263829 hsa-miR-302c-3p 0 0 1
chr21:33263648|33263829 hsa-miR-302d-5p 0 0 1
chr21:33263648|33263829 hsa-miR-302d-3p 0 0 1
chr21:33263648|33263829 hsa-miR-372-5p 0 0 1
chr21:33263648|33263829 hsa-miR-372-3p 0 0 1
chr21:33263648|33263829 hsa-miR-373-5p 0 0 1
chr21:33263648|33263829 hsa-miR-373-3p 0 0 1
chr21:33263648|33263829 hsa-miR-379-5p 0 0 1
chr21:33263648|33263829 hsa-miR-379-3p 0 0 1
chr21:33263648|33263829 hsa-miR-380-5p 0 0 1
chr21:33263648|33263829 hsa-miR-380-3p 0 0 1
chr21:33263648|33263829 hsa-miR-18b-5p 0 0 1
chr21:33263648|33263829 hsa-miR-18b-3p 0 0 1
chr21:33263648|33263829 hsa-miR-20b-5p 0 0 1
chr21:33263648|33263829 hsa-miR-20b-3p 0 0 1
chr21:33263648|33263829 hsa-miR-494-5p 0 0 1
chr21:33263648|33263829 hsa-miR-494-3p 0 0 1
chr21:33263648|33263829 hsa-miR-520e-5p 0 0 1
chr21:33263648|33263829 hsa-miR-520e-3p 0 0 1
chr21:33263648|33263829 hsa-miR-520b-5p 0 0 1
chr21:33263648|33263829 hsa-miR-520b-3p 0 0 1
chr21:33263648|33263829 hsa-miR-519d-5p 0 0 1
chr21:33263648|33263829 hsa-miR-519d-3p 0 0 1
chr21:33263648|33263829 hsa-miR-520g-5p 0 0 1
chr21:33263648|33263829 hsa-miR-520g-3p 0 0 1
chr21:33263648|33263829 hsa-miR-520h 0 1 1
chr21:33263648|33263829 hsa-miR-613 0 0 1
chr21:33263648|33263829 hsa-miR-636 0 0 1
chr21:33263648|33263829 hsa-miR-298 0 0 1
chr21:33263648|33263829 hsa-miR-548g-5p 0 0 1
chr21:33263648|33263829 hsa-miR-548g-3p 0 0 1
chr21:33263648|33263829 hsa-miR-302e 0 0 1
chr21:33263648|33263829 hsa-miR-1322 0 0 1
chr21:33263648|33263829 hsa-miR-491-5p 1 1 1
chr21:33263648|33263829 hsa-miR-767-5p 0 0 1
chr21:33263648|33263829 hsa-miR-520d-3p 0 0 1
chr21:33263648|33263829 hsa-miR-519b-3p 0 1 1
chr21:33263648|33263829 hsa-miR-519c-3p 0 1 1
chr21:33263648|33263829 hsa-miR-520a-3p 0 0 1
chr21:33263648|33263829 hsa-miR-520c-3p 0 0 1
chr21:33263648|33263829 hsa-miR-516a-3p 0 1 1
chr21:33263648|33263829 hsa-miR-30c 0 0 1
chr21:33263648|33263829 hsa-miR-153 0 0 1
chr21:33263648|33263829 hsa-miR-218 0 0 1
chr21:33263648|33263829 hsa-miR-1 0 0 1
chr21:33263648|33263829 hsa-miR-519a 0 0 1
chr21:33263648|33263829 hsa-miR-3138 0 1 0
chr21:33263648|33263829 hsa-miR-4263 0 1 0
chr21:33263648|33263829 hsa-miR-4428 0 1 0
chr21:33263648|33263829 hsa-miR-134-3p 0 1 0
chr21:33263648|33263829 hsa-miR-146a-3p 0 1 0
chr21:33263648|33263829 hsa-miR-6806-5p 1 1 0
chr21:33263648|33263829 hsa-miR-4436b-5p 1 0 0
chr21:33263648|33263829 hsa-miR-939-3p 1 0 0
chr21:33263648|33263829 hsa-miR-3690 0 1 0
chr21:33263648|33263829 hsa-miR-3619-3p 1 0 0
chr21:33263648|33263829 hsa-miR-5589-3p 0 1 0
chr21:33263648|33263829 hsa-miR-6732-3p 0 1 0
chr21:33263648|33263829 hsa-miR-1343-5p 1 0 0
chr21:33263648|33263829 hsa-miR-939-5p 1 0 0
chr21:33263648|33263829 hsa-miR-6810-3p 0 1 0
chr21:33263648|33263829 hsa-miR-520f-3p 0 1 0
chr21:33263648|33263829 hsa-miR-6783-3p 1 0 0
chr21:33263648|33263829 hsa-miR-519a-3p 0 1 0
chr21:33263648|33263829 hsa-miR-4536-5p 0 1 0
chr21:33263648|33263829 hsa-miR-516b-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr21:33263648|33263829
ORF Type ORF1
Protein Length 60
Nucleotide Length 180
Protein Sequence MHIPSMGTIVSFSALFTYSKWCTLKEAHVHLSFTLMHLGCFCIMSTREQGSPQFQRWSRT
Nucleotide Sequence ATGCACATTCCCAGTATGGGGACCATAGTATCATTCAGTGCATTGTTTACATATTCAAAGTGGTGCACTTTGAAGGAAGCACATGTGCACCTTTCCTTTACACTAATGCACTTAGGATGTTTCTGCATCATGTCTACCAGGGAGCAGGGTTCCCCACAGTTTCAGAGGTGGTCCAGGACC
CircID chr21:33263648|33263829
ORF Type ORF2
Protein Length 47
Nucleotide Length 141
Protein Sequence MVDMMQKHPKCISVKERCTCASFKVHHFEYVNNALNDTMVPILGMCI
Nucleotide Sequence CTGGTAGACATGATGCAGAAACATCCTAAGTGCATTAGTGTAAAGGAAAGGTGCACATGTGCTTCCTTCAAAGTGCACCACTTTGAATATGTAAACAATGCACTGAATGATACTATGGTCCCCATACTGGGAATGTGCATA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab