CircRNA Information

General Information
circRNA Basic Information
CircID chr21:33559315|33559644
Strand -
CircType exon
Host Gene ENSG00000159140.16;
Algorism CIRI2;
Sequence CTCCTTTTTATCATCATCCCTTTAAACTCAGTGAACCCAAACCTATTTTTTTCAATCTGAATGTGAGTATTAGTGCTTATGGATTGGTAAAACAGTGTAACTTGTGGAACTATTTAAATAAAACCCAAATCGAATTTAGTTTATTAATTTTTGTTTTAAATACTGTGAGAAATAATGGATAATATCATTTCCTTCAGATTATGTAGAAAATCTCAAACCATTTAATGTAGATATCATATTGAGCTTTAATTAAGAAACACTTTATTTTTTAGATTGCTGCAGCAAAACCAACTCCACCAAAAAGCCAGGTAACATTAACAAAAGAATTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr21:33559315|33559644 hsa-miR-17-5p 0 0 1
chr21:33559315|33559644 hsa-miR-17-3p 0 0 1
chr21:33559315|33559644 hsa-miR-20a-5p 0 0 1
chr21:33559315|33559644 hsa-miR-20a-3p 0 0 1
chr21:33559315|33559644 hsa-miR-23a-5p 0 0 1
chr21:33559315|33559644 hsa-miR-23a-3p 0 0 1
chr21:33559315|33559644 hsa-miR-27a-5p 0 0 1
chr21:33559315|33559644 hsa-miR-27a-3p 0 0 1
chr21:33559315|33559644 hsa-miR-93-5p 0 0 1
chr21:33559315|33559644 hsa-miR-93-3p 0 0 1
chr21:33559315|33559644 hsa-miR-106a-5p 0 0 1
chr21:33559315|33559644 hsa-miR-106a-3p 0 0 1
chr21:33559315|33559644 hsa-miR-107 0 0 1
chr21:33559315|33559644 hsa-miR-181c-5p 0 0 1
chr21:33559315|33559644 hsa-miR-181c-3p 0 0 1
chr21:33559315|33559644 hsa-miR-200b-5p 0 0 1
chr21:33559315|33559644 hsa-miR-200b-3p 0 0 1
chr21:33559315|33559644 hsa-miR-23b-5p 0 0 1
chr21:33559315|33559644 hsa-miR-23b-3p 0 0 1
chr21:33559315|33559644 hsa-miR-27b-5p 0 0 1
chr21:33559315|33559644 hsa-miR-27b-3p 0 0 1
chr21:33559315|33559644 hsa-miR-144-5p 0 0 1
chr21:33559315|33559644 hsa-miR-144-3p 0 0 1
chr21:33559315|33559644 hsa-miR-320a-5p 0 0 1
chr21:33559315|33559644 hsa-miR-320a-3p 0 0 1
chr21:33559315|33559644 hsa-miR-200c-5p 0 0 1
chr21:33559315|33559644 hsa-miR-200c-3p 0 0 1
chr21:33559315|33559644 hsa-miR-106b-5p 0 0 1
chr21:33559315|33559644 hsa-miR-106b-3p 0 0 1
chr21:33559315|33559644 hsa-miR-20b-5p 0 0 1
chr21:33559315|33559644 hsa-miR-20b-3p 0 0 1
chr21:33559315|33559644 hsa-miR-429 0 0 1
chr21:33559315|33559644 hsa-miR-452-5p 0 0 1
chr21:33559315|33559644 hsa-miR-452-3p 0 0 1
chr21:33559315|33559644 hsa-miR-181d-5p 0 0 1
chr21:33559315|33559644 hsa-miR-181d-3p 0 0 1
chr21:33559315|33559644 hsa-miR-519d-5p 0 0 1
chr21:33559315|33559644 hsa-miR-519d-3p 0 0 1
chr21:33559315|33559644 hsa-miR-522-5p 0 0 1
chr21:33559315|33559644 hsa-miR-522-3p 0 0 1
chr21:33559315|33559644 hsa-miR-569 0 1 1
chr21:33559315|33559644 hsa-miR-571 0 0 1
chr21:33559315|33559644 hsa-miR-619-5p 0 0 1
chr21:33559315|33559644 hsa-miR-619-3p 0 0 1
chr21:33559315|33559644 hsa-miR-629-5p 0 0 1
chr21:33559315|33559644 hsa-miR-629-3p 0 0 1
chr21:33559315|33559644 hsa-miR-656-5p 0 0 1
chr21:33559315|33559644 hsa-miR-656-3p 0 0 1
chr21:33559315|33559644 hsa-miR-1229-5p 0 0 1
chr21:33559315|33559644 hsa-miR-1229-3p 0 0 1
chr21:33559315|33559644 hsa-miR-1208 0 0 1
chr21:33559315|33559644 hsa-miR-1272 0 0 1
chr21:33559315|33559644 hsa-miR-1252-5p 0 0 1
chr21:33559315|33559644 hsa-miR-1252-3p 0 0 1
chr21:33559315|33559644 hsa-miR-142-5p 0 0 1
chr21:33559315|33559644 hsa-miR-1184 0 0 1
chr21:33559315|33559644 hsa-miR-409-3p 0 0 1
chr21:33559315|33559644 hsa-miR-885-5p 0 0 1
chr21:33559315|33559644 hsa-miR-320b 0 0 1
chr21:33559315|33559644 hsa-miR-320c 0 0 1
chr21:33559315|33559644 hsa-miR-320d 0 0 1
chr21:33559315|33559644 hsa-miR-342-3p 0 0 1
chr21:33559315|33559644 hsa-miR-128 0 0 1
chr21:33559315|33559644 hsa-miR-103 0 0 1
chr21:33559315|33559644 hsa-miR-181a 0 0 1
chr21:33559315|33559644 hsa-miR-181b 0 0 1
chr21:33559315|33559644 hsa-miR-323-3p 0 0 1
chr21:33559315|33559644 hsa-miR-4748 0 1 0
chr21:33559315|33559644 hsa-miR-7515 1 0 0
chr21:33559315|33559644 hsa-miR-92a-2-5p 1 0 0
chr21:33559315|33559644 hsa-miR-3692-3p 0 1 0
chr21:33559315|33559644 hsa-miR-192-3p 0 1 0
chr21:33559315|33559644 hsa-miR-5187-5p 0 1 0
chr21:33559315|33559644 hsa-miR-6880-5p 1 0 0
chr21:33559315|33559644 hsa-miR-3064-5p 1 0 0
chr21:33559315|33559644 hsa-miR-6793-5p 1 0 0
chr21:33559315|33559644 hsa-miR-6796-5p 1 0 0
chr21:33559315|33559644 hsa-miR-6740-5p 1 0 0
chr21:33559315|33559644 hsa-miR-2681-5p 0 1 0
chr21:33559315|33559644 hsa-miR-6756-5p 1 0 0
chr21:33559315|33559644 hsa-miR-455-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr21:33559315|33559644
ORF Type ORF1
Protein Length 41
Nucleotide Length 126
Protein Sequence MNVSISAYGLVKQCNLWNYLNKTQIEFSLLIFVLNTVRNNG
Nucleotide Sequence CTGAATGTGAGTATTAGTGCTTATGGATTGGTAAAACAGTGTAACTTGTGGAACTATTTAAATAAAACCCAAATCGAATTTAGTTTATTAATTTTTGTTTTAAATACTGTGAGAAATAATGGATAA
CircID chr21:33559315|33559644
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MFYQSISTNTHIQIEKNRFGFTEFKGMMIKR
Nucleotide Sequence CTGTTTTACCAATCCATAAGCACTAATACTCACATTCAGATTGAAAAAAATAGGTTTGGGTTCACTGAGTTTAAAGGGATGATGATAAAAAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab