CircRNA Information

General Information
circRNA Basic Information
CircID chr21:37408934|37409104
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGCAGTTCAGGGCAGAGTGGGGTTAGGGTGGTAATGGTGGCATAAATACTGTTGTGCCAGGGTCATGTCTATAGGTGTGTGGTGGGAAGCTCTGGGGGAGACAGCACTGGCATTGGGTTTGGACGTGGCATTTACGGGCAGAGGTGGATAAAGAAGACCCATGGAGTAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr21:37408934|37409104 hsa-miR-144-5p 0 0 1
chr21:37408934|37409104 hsa-miR-144-3p 0 0 1
chr21:37408934|37409104 hsa-miR-504-5p 0 0 1
chr21:37408934|37409104 hsa-miR-504-3p 0 0 1
chr21:37408934|37409104 hsa-miR-626 0 0 1
chr21:37408934|37409104 hsa-miR-874-5p 0 0 1
chr21:37408934|37409104 hsa-miR-874-3p 0 0 1
chr21:37408934|37409104 hsa-miR-1228-5p 0 0 1
chr21:37408934|37409104 hsa-miR-1228-3p 0 0 1
chr21:37408934|37409104 hsa-miR-1825 0 1 1
chr21:37408934|37409104 hsa-miR-512-3p 0 1 1
chr21:37408934|37409104 hsa-miR-193a-5p 0 0 1
chr21:37408934|37409104 hsa-miR-146b-3p 0 0 1
chr21:37408934|37409104 hsa-miR-508-5p 0 0 1
chr21:37408934|37409104 hsa-miR-361-3p 0 0 1
chr21:37408934|37409104 hsa-miR-1224-3p 0 0 1
chr21:37408934|37409104 hsa-miR-188-3p 0 0 1
chr21:37408934|37409104 hsa-miR-885-5p 1 1 1
chr21:37408934|37409104 hsa-miR-324-3p 1 0 1
chr21:37408934|37409104 hsa-miR-509-3-5p 0 0 1
chr21:37408934|37409104 hsa-miR-509-5p 0 0 1
chr21:37408934|37409104 hsa-miR-491-3p 0 0 1
chr21:37408934|37409104 hsa-miR-362-3p 0 1 1
chr21:37408934|37409104 hsa-miR-1260 0 0 1
chr21:37408934|37409104 hsa-miR-1280 0 0 1
chr21:37408934|37409104 hsa-miR-1308 0 0 1
chr21:37408934|37409104 hsa-miR-329 0 0 1
chr21:37408934|37409104 hsa-miR-346 1 0 0
chr21:37408934|37409104 hsa-miR-935 1 0 0
chr21:37408934|37409104 hsa-miR-1260b 1 1 0
chr21:37408934|37409104 hsa-miR-3685 0 1 0
chr21:37408934|37409104 hsa-miR-4522 1 0 0
chr21:37408934|37409104 hsa-miR-197-3p 1 0 0
chr21:37408934|37409104 hsa-miR-18a-3p 1 1 0
chr21:37408934|37409104 hsa-miR-6836-3p 1 0 0
chr21:37408934|37409104 hsa-miR-7110-3p 1 0 0
chr21:37408934|37409104 hsa-miR-122-3p 1 0 0
chr21:37408934|37409104 hsa-miR-6728-3p 1 0 0
chr21:37408934|37409104 hsa-miR-6882-3p 1 0 0
chr21:37408934|37409104 hsa-miR-4436b-5p 1 1 0
chr21:37408934|37409104 hsa-miR-6884-3p 1 0 0
chr21:37408934|37409104 hsa-miR-4715-3p 1 1 0
chr21:37408934|37409104 hsa-miR-1306-5p 1 0 0
chr21:37408934|37409104 hsa-miR-6769a-3p 1 0 0
chr21:37408934|37409104 hsa-miR-593-3p 1 0 0
chr21:37408934|37409104 hsa-miR-4707-5p 1 0 0
chr21:37408934|37409104 hsa-miR-1237-3p 1 0 0
chr21:37408934|37409104 hsa-miR-4742-3p 1 0 0
chr21:37408934|37409104 hsa-miR-6730-3p 1 0 0
chr21:37408934|37409104 hsa-miR-4732-3p 1 0 0
chr21:37408934|37409104 hsa-miR-4758-3p 1 0 0
chr21:37408934|37409104 hsa-miR-6793-3p 1 0 0
chr21:37408934|37409104 hsa-miR-6778-3p 1 0 0
chr21:37408934|37409104 hsa-miR-6871-3p 1 0 0
chr21:37408934|37409104 hsa-miR-6752-3p 1 0 0
chr21:37408934|37409104 hsa-miR-7151-5p 1 1 0
chr21:37408934|37409104 hsa-miR-6865-3p 1 0 0
chr21:37408934|37409104 hsa-miR-1914-5p 1 0 0
chr21:37408934|37409104 hsa-miR-6777-3p 0 1 0
chr21:37408934|37409104 hsa-miR-1227-3p 1 0 0
chr21:37408934|37409104 hsa-miR-3620-3p 1 0 0
chr21:37408934|37409104 hsa-miR-4433a-5p 1 0 0
chr21:37408934|37409104 hsa-miR-1229-3p 1 0 0
chr21:37408934|37409104 hsa-miR-4750-3p 1 0 0
chr21:37408934|37409104 hsa-miR-6798-3p 1 0 0
chr21:37408934|37409104 hsa-miR-4433b-5p 1 0 0
chr21:37408934|37409104 hsa-miR-4639-3p 1 0 0
chr21:37408934|37409104 hsa-miR-4709-5p 0 1 0
chr21:37408934|37409104 hsa-miR-3162-3p 1 0 0
chr21:37408934|37409104 hsa-miR-6839-3p 0 1 0
chr21:37408934|37409104 hsa-miR-221-5p 0 1 0
chr21:37408934|37409104 hsa-miR-18b-3p 1 1 0
chr21:37408934|37409104 hsa-miR-6731-3p 1 0 0
chr21:37408934|37409104 hsa-miR-3127-3p 1 0 0
chr21:37408934|37409104 hsa-miR-6877-3p 1 0 0
chr21:37408934|37409104 hsa-miR-6511a-3p 1 0 0
chr21:37408934|37409104 hsa-miR-6784-3p 1 0 0
chr21:37408934|37409104 hsa-miR-6819-3p 1 0 0
chr21:37408934|37409104 hsa-miR-4701-5p 1 0 0
chr21:37408934|37409104 hsa-miR-4769-3p 1 0 0
chr21:37408934|37409104 hsa-miR-3064-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr21:37408934|37409104
ORF Type ORF1
Protein Length 40
Nucleotide Length 120
Protein Sequence MLCQGHVYRCVVGSSGGDSTGIGFGRGIYGQRWIKKTHGV
Nucleotide Sequence CTGTTGTGCCAGGGTCATGTCTATAGGTGTGTGGTGGGAAGCTCTGGGGGAGACAGCACTGGCATTGGGTTTGGACGTGGCATTTACGGGCAGAGGTGGATAAAGAAGACCCATGGAGTA
CircID chr21:37408934|37409104
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MSIGVWWEALGETALALGLDVAFTGRGG
Nucleotide Sequence ATGTCTATAGGTGTGTGGTGGGAAGCTCTGGGGGAGACAGCACTGGCATTGGGTTTGGACGTGGCATTTACGGGCAGAGGTGGATAA
CircID chr21:37408934|37409104
ORF Type ORF3
Protein Length 51
Nucleotide Length 156
Protein Sequence MGLLYPPLPVNATSKPNASAVSPRASHHTPIDMTLAQQYLCHHYHPNPTLP
Nucleotide Sequence ATGGGTCTTCTTTATCCACCTCTGCCCGTAAATGCCACGTCCAAACCCAATGCCAGTGCTGTCTCCCCCAGAGCTTCCCACCACACACCTATAGACATGACCCTGGCACAACAGTATTTATGCCACCATTACCACCCTAACCCCACTCTGCCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab