CircRNA Information

General Information
circRNA Basic Information
CircID chr21:38817521|38817748
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CCCTCCCTCGCTGGCCTGGCCAGACCCTGTGCCCTCCCCAGTATCAGCAACCAGAAGAAAGGACCCAGATTCCATGACAGCTCTTTAAGCTCCCAAGTTCAGAGCCAGTTTACAAATTGCTTTTCACGCACTCTGTGCCTGCCGCCTCTTGTTTGCTACACTAAACCAACATTACTGGTGACTGCGGTAATCAGCTCACTTCGTTCTGCTCCTTGCTCTAAGAATTGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr21:38817521|38817748 hsa-miR-30a-5p 0 0 1
chr21:38817521|38817748 hsa-miR-30a-3p 0 0 1
chr21:38817521|38817748 hsa-miR-30d-5p 0 0 1
chr21:38817521|38817748 hsa-miR-30d-3p 0 0 1
chr21:38817521|38817748 hsa-miR-30b-5p 0 0 1
chr21:38817521|38817748 hsa-miR-30b-3p 0 0 1
chr21:38817521|38817748 hsa-miR-149-5p 0 0 1
chr21:38817521|38817748 hsa-miR-149-3p 0 0 1
chr21:38817521|38817748 hsa-miR-30e-5p 0 0 1
chr21:38817521|38817748 hsa-miR-30e-3p 0 0 1
chr21:38817521|38817748 hsa-miR-558 0 0 1
chr21:38817521|38817748 hsa-miR-583 0 0 1
chr21:38817521|38817748 hsa-miR-892b 0 1 1
chr21:38817521|38817748 hsa-miR-760 1 1 1
chr21:38817521|38817748 hsa-miR-920 0 1 1
chr21:38817521|38817748 hsa-miR-939-5p 0 0 1
chr21:38817521|38817748 hsa-miR-939-3p 0 0 1
chr21:38817521|38817748 hsa-miR-1182 1 1 1
chr21:38817521|38817748 hsa-miR-1226-5p 0 0 1
chr21:38817521|38817748 hsa-miR-1226-3p 0 0 1
chr21:38817521|38817748 hsa-miR-548g-5p 0 0 1
chr21:38817521|38817748 hsa-miR-548g-3p 0 0 1
chr21:38817521|38817748 hsa-miR-1276 0 1 1
chr21:38817521|38817748 hsa-miR-548p 0 0 1
chr21:38817521|38817748 hsa-miR-1321 0 0 1
chr21:38817521|38817748 hsa-miR-490-5p 0 0 1
chr21:38817521|38817748 hsa-miR-628-5p 0 0 1
chr21:38817521|38817748 hsa-miR-409-3p 0 0 1
chr21:38817521|38817748 hsa-miR-299-5p 0 0 1
chr21:38817521|38817748 hsa-miR-30c 0 0 1
chr21:38817521|38817748 hsa-miR-220c 0 0 1
chr21:38817521|38817748 hsa-miR-612 1 0 0
chr21:38817521|38817748 hsa-miR-637 1 0 0
chr21:38817521|38817748 hsa-miR-661 1 0 0
chr21:38817521|38817748 hsa-miR-759 0 1 0
chr21:38817521|38817748 hsa-miR-765 1 0 0
chr21:38817521|38817748 hsa-miR-1286 0 1 0
chr21:38817521|38817748 hsa-miR-3196 1 0 0
chr21:38817521|38817748 hsa-miR-3197 1 0 0
chr21:38817521|38817748 hsa-miR-378c 1 1 0
chr21:38817521|38817748 hsa-miR-4259 1 0 0
chr21:38817521|38817748 hsa-miR-4269 1 1 0
chr21:38817521|38817748 hsa-miR-4270 1 0 0
chr21:38817521|38817748 hsa-miR-3923 1 1 0
chr21:38817521|38817748 hsa-miR-4462 1 0 0
chr21:38817521|38817748 hsa-miR-4463 1 0 0
chr21:38817521|38817748 hsa-miR-4468 0 1 0
chr21:38817521|38817748 hsa-miR-4488 1 0 0
chr21:38817521|38817748 hsa-miR-4538 1 0 0
chr21:38817521|38817748 hsa-miR-4539 1 1 0
chr21:38817521|38817748 hsa-miR-3960 1 0 0
chr21:38817521|38817748 hsa-miR-4651 1 0 0
chr21:38817521|38817748 hsa-miR-4688 1 0 0
chr21:38817521|38817748 hsa-miR-4739 1 0 0
chr21:38817521|38817748 hsa-miR-4741 1 0 0
chr21:38817521|38817748 hsa-miR-4767 1 0 0
chr21:38817521|38817748 hsa-miR-5090 1 0 0
chr21:38817521|38817748 hsa-miR-5572 1 0 0
chr21:38817521|38817748 hsa-miR-5787 1 0 0
chr21:38817521|38817748 hsa-miR-6081 1 0 0
chr21:38817521|38817748 hsa-miR-6090 1 0 0
chr21:38817521|38817748 hsa-miR-6134 1 0 0
chr21:38817521|38817748 hsa-miR-6860 1 0 0
chr21:38817521|38817748 hsa-miR-8055 1 0 0
chr21:38817521|38817748 hsa-miR-8072 1 0 0
chr21:38817521|38817748 hsa-miR-8075 1 0 0
chr21:38817521|38817748 hsa-miR-8089 1 1 0
chr21:38817521|38817748 hsa-miR-9718 1 0 0
chr21:38817521|38817748 hsa-miR-12115 1 0 0
chr21:38817521|38817748 hsa-miR-150-3p 1 0 0
chr21:38817521|38817748 hsa-miR-4731-5p 1 0 0
chr21:38817521|38817748 hsa-miR-6809-5p 1 0 0
chr21:38817521|38817748 hsa-miR-6765-5p 1 1 0
chr21:38817521|38817748 hsa-miR-6861-5p 1 0 0
chr21:38817521|38817748 hsa-miR-6825-5p 1 1 0
chr21:38817521|38817748 hsa-miR-6857-5p 1 0 0
chr21:38817521|38817748 hsa-miR-1972 1 1 0
chr21:38817521|38817748 hsa-miR-4687-3p 1 0 0
chr21:38817521|38817748 hsa-miR-6799-5p 1 0 0
chr21:38817521|38817748 hsa-miR-4695-5p 1 0 0
chr21:38817521|38817748 hsa-miR-4755-3p 0 1 0
chr21:38817521|38817748 hsa-miR-6820-5p 1 1 0
chr21:38817521|38817748 hsa-miR-6741-5p 1 0 0
chr21:38817521|38817748 hsa-miR-4655-5p 1 1 0
chr21:38817521|38817748 hsa-miR-197-5p 1 0 0
chr21:38817521|38817748 hsa-miR-432-5p 1 0 0
chr21:38817521|38817748 hsa-miR-3180-3p 1 0 0
chr21:38817521|38817748 hsa-miR-6793-5p 1 0 0
chr21:38817521|38817748 hsa-miR-6827-5p 1 0 0
chr21:38817521|38817748 hsa-miR-23a-5p 1 0 0
chr21:38817521|38817748 hsa-miR-6821-5p 1 0 0
chr21:38817521|38817748 hsa-miR-6810-5p 1 0 0
chr21:38817521|38817748 hsa-miR-5088-5p 1 0 0
chr21:38817521|38817748 hsa-miR-4738-3p 1 0 0
chr21:38817521|38817748 hsa-miR-1229-5p 1 0 0
chr21:38817521|38817748 hsa-miR-4640-5p 1 0 0
chr21:38817521|38817748 hsa-miR-1228-5p 1 0 0
chr21:38817521|38817748 hsa-miR-6771-5p 1 0 0
chr21:38817521|38817748 hsa-miR-4732-5p 1 1 0
chr21:38817521|38817748 hsa-miR-6824-5p 1 0 0
chr21:38817521|38817748 hsa-miR-6789-5p 1 0 0
chr21:38817521|38817748 hsa-miR-214-3p 1 0 0
chr21:38817521|38817748 hsa-miR-10400-5p 1 0 0
chr21:38817521|38817748 hsa-miR-1207-5p 1 0 0
chr21:38817521|38817748 hsa-miR-1233-5p 1 0 0
chr21:38817521|38817748 hsa-miR-4763-3p 1 0 0
chr21:38817521|38817748 hsa-miR-6787-5p 1 0 0
chr21:38817521|38817748 hsa-miR-6816-5p 1 0 0
chr21:38817521|38817748 hsa-miR-6870-5p 1 0 0
chr21:38817521|38817748 hsa-miR-6726-5p 1 0 0
chr21:38817521|38817748 hsa-miR-6743-5p 1 0 0
chr21:38817521|38817748 hsa-miR-6756-5p 1 0 0
chr21:38817521|38817748 hsa-miR-6803-5p 1 0 0
chr21:38817521|38817748 hsa-miR-6819-5p 1 0 0
chr21:38817521|38817748 hsa-miR-1249-5p 1 0 0
chr21:38817521|38817748 hsa-miR-6763-5p 1 1 0
chr21:38817521|38817748 hsa-miR-6779-5p 1 1 0
chr21:38817521|38817748 hsa-miR-6780a-5p 1 0 0
chr21:38817521|38817748 hsa-miR-6797-5p 1 0 0
chr21:38817521|38817748 hsa-miR-7111-5p 1 0 0
chr21:38817521|38817748 hsa-miR-4728-5p 1 1 0
chr21:38817521|38817748 hsa-miR-5196-5p 1 0 0
chr21:38817521|38817748 hsa-miR-6780b-5p 1 0 0
chr21:38817521|38817748 hsa-miR-6836-5p 1 0 0
chr21:38817521|38817748 hsa-miR-1237-5p 1 0 0
chr21:38817521|38817748 hsa-miR-1909-3p 1 0 0
chr21:38817521|38817748 hsa-miR-328-5p 1 0 0
chr21:38817521|38817748 hsa-miR-4632-5p 1 0 0
chr21:38817521|38817748 hsa-miR-4725-3p 1 0 0
chr21:38817521|38817748 hsa-miR-675-5p 1 0 0
chr21:38817521|38817748 hsa-miR-6846-5p 1 0 0
chr21:38817521|38817748 hsa-miR-6848-5p 1 0 0
chr21:38817521|38817748 hsa-miR-6858-5p 1 0 0
chr21:38817521|38817748 hsa-miR-6883-5p 0 1 0
chr21:38817521|38817748 hsa-miR-6885-5p 1 0 0
chr21:38817521|38817748 hsa-miR-1266-5p 1 0 0
chr21:38817521|38817748 hsa-miR-6511a-5p 1 0 0
chr21:38817521|38817748 hsa-miR-3198 1 0 0
chr21:38817521|38817748 hsa-miR-6856-5p 1 0 0
chr21:38817521|38817748 hsa-miR-4700-5p 0 1 0
chr21:38817521|38817748 hsa-miR-6891-5p 1 0 0
chr21:38817521|38817748 hsa-miR-378a-3p 0 1 0
chr21:38817521|38817748 hsa-miR-541-3p 1 0 0
chr21:38817521|38817748 hsa-miR-6750-5p 1 0 0
chr21:38817521|38817748 hsa-miR-6785-5p 1 1 0
chr21:38817521|38817748 hsa-miR-4667-5p 0 1 0
chr21:38817521|38817748 hsa-miR-5591-5p 1 0 0
chr21:38817521|38817748 hsa-miR-769-3p 1 0 0
chr21:38817521|38817748 hsa-miR-3619-5p 1 0 0
chr21:38817521|38817748 hsa-miR-6764-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr21:38817521|38817748
ORF Type ORF1
Protein Length 71
Nucleotide Length 213
Protein Sequence MARPCALPSISNQKKGPRFHDSSLSSQVQSQFTNCFSRTLCLPPLVCYTKPTLLVTAVISSLRSAPCSKNC
Nucleotide Sequence CTGGCCAGACCCTGTGCCCTCCCCAGTATCAGCAACCAGAAGAAAGGACCCAGATTCCATGACAGCTCTTTAAGCTCCCAAGTTCAGAGCCAGTTTACAAATTGCTTTTCACGCACTCTGTGCCTGCCGCCTCTTGTTTGCTACACTAAACCAACATTACTGGTGACTGCGGTAATCAGCTCACTTCGTTCTGCTCCTTGCTCTAAGAATTGC
CircID chr21:38817521|38817748
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MAWPDPVPSPVSATRRKDPDSMTAL
Nucleotide Sequence CTGGCCTGGCCAGACCCTGTGCCCTCCCCAGTATCAGCAACCAGAAGAAAGGACCCAGATTCCATGACAGCTCTTTAA
CircID chr21:38817521|38817748
ORF Type ORF3
Protein Length 25
Nucleotide Length 75
Protein Sequence MESGSFLLVADTGEGTGSGQASEGG
Nucleotide Sequence ATGGAATCTGGGTCCTTTCTTCTGGTTGCTGATACTGGGGAGGGCACAGGGTCTGGCCAGGCCAGCGAGGGAGGG
CircID chr21:38817521|38817748
ORF Type ORF4
Protein Length 26
Nucleotide Length 78
Protein Sequence MSWNLGPFFWLLILGRAQGLARPARE
Nucleotide Sequence CTGTCATGGAATCTGGGTCCTTTCTTCTGGTTGCTGATACTGGGGAGGGCACAGGGTCTGGCCAGGCCAGCGAGGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab