CircRNA Information

General Information
circRNA Basic Information
CircID chr21:39228500|39229436
Strand -
CircType exon
Host Gene ENSG00000185658.13;
Algorism find_circ;CIRI2;DCC;
Sequence GATCAAGAATTGGTTAAAATAGTTGGAATACGATATGAAGTTGGGCCCCCTACACTCTGTTGCCTAAAACTAGCATTTATAGATCCAGCAACTGGAAAACTTATGGACAAATCTTTCTCTATTAGCATGCCCTTCCCATTTAACTCCAGGGTAACTGGTAGAGCACTGTGGATAGCCTAAGATGTGGCTCGAGCTTCTGATGGCTAGGAAACCCATCCCTGACCCTGAAGTCATAGTAGGCATGTCACAGTTATAATATCATGATATGCCAGATGTTATTGACTTTCTTGTATTGCGTCAATTTTATGATGAAGCAAGACAGAGGAATTGGCAGTCTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr21:39228500|39229436 hsa-miR-34a-5p 0 0 1
chr21:39228500|39229436 hsa-miR-34a-3p 0 0 1
chr21:39228500|39229436 hsa-miR-449a 0 0 1
chr21:39228500|39229436 hsa-miR-433-5p 0 0 1
chr21:39228500|39229436 hsa-miR-433-3p 0 0 1
chr21:39228500|39229436 hsa-miR-578 0 0 1
chr21:39228500|39229436 hsa-miR-643 0 0 1
chr21:39228500|39229436 hsa-miR-449b-5p 0 0 1
chr21:39228500|39229436 hsa-miR-449b-3p 0 0 1
chr21:39228500|39229436 hsa-miR-190b-5p 0 0 1
chr21:39228500|39229436 hsa-miR-190b-3p 0 0 1
chr21:39228500|39229436 hsa-miR-1179 0 0 1
chr21:39228500|39229436 hsa-miR-548e-5p 0 0 1
chr21:39228500|39229436 hsa-miR-548e-3p 0 0 1
chr21:39228500|39229436 hsa-miR-1267 0 0 1
chr21:39228500|39229436 hsa-miR-1272 0 0 1
chr21:39228500|39229436 hsa-miR-1322 0 0 1
chr21:39228500|39229436 hsa-miR-296-5p 1 0 1
chr21:39228500|39229436 hsa-miR-875-3p 0 0 1
chr21:39228500|39229436 hsa-miR-338-3p 0 0 1
chr21:39228500|39229436 hsa-miR-34c-5p 0 0 1
chr21:39228500|39229436 hsa-miR-548a-3p 0 0 1
chr21:39228500|39229436 hsa-miR-590-3p 0 0 1
chr21:39228500|39229436 hsa-miR-548f 0 0 1
chr21:39228500|39229436 hsa-miR-190 0 0 1
chr21:39228500|39229436 hsa-miR-592 0 1 0
chr21:39228500|39229436 hsa-miR-6076 1 0 0
chr21:39228500|39229436 hsa-miR-3194-3p 1 0 0
chr21:39228500|39229436 hsa-miR-659-3p 1 0 0
chr21:39228500|39229436 hsa-miR-615-5p 1 0 0
chr21:39228500|39229436 hsa-miR-296-3p 1 0 0
chr21:39228500|39229436 hsa-miR-6847-5p 0 1 0
chr21:39228500|39229436 hsa-miR-7158-3p 1 0 0
chr21:39228500|39229436 hsa-miR-1244 1 1 0
chr21:39228500|39229436 hsa-miR-4745-5p 1 0 0
chr21:39228500|39229436 hsa-miR-10398-5p 0 1 0
chr21:39228500|39229436 hsa-miR-10397-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr21:39228500|39229436
ORF Type ORF1
Protein Length 58
Nucleotide Length 174
Protein Sequence MPTMTSGSGMGFLAIRSSSHILGYPQCSTSYPGVKWEGHANRERFVHKFSSCWIYKC*
Nucleotide Sequence ATGCCTACTATGACTTCAGGGTCAGGGATGGGTTTCCTAGCCATCAGAAGCTCGAGCCACATCTTAGGCTATCCACAGTGCTCTACCAGTTACCCTGGAGTTAAATGGGAAGGGCATGCTAATAGAGAAAGATTTGTCCATAAGTTTTCCAGTTGCTGGATCTATAAATGCTAG
CircID chr21:39228500|39229436
ORF Type ORF2
Protein Length 42
Nucleotide Length 126
Protein Sequence MLIEKDLSISFPVAGSINASFRQQSVGGPTSYRIPTILTNS*
Nucleotide Sequence ATGCTAATAGAGAAAGATTTGTCCATAAGTTTTCCAGTTGCTGGATCTATAAATGCTAGTTTTAGGCAACAGAGTGTAGGGGGCCCAACTTCATATCGTATTCCAACTATTTTAACCAATTCTTGA
CircID chr21:39228500|39229436
ORF Type ORF1
Protein Length 44
Nucleotide Length 135
Protein Sequence MPIPLSCFIIKLTQYKKVNNIWHIMISNRERFVHKFSSCWIYKC
Nucleotide Sequence CTGCCAATTCCTCTGTCTTGCTTCATCATAAAATTGACGCAATACAAGAAAGTCAATAACATCTGGCATATCATGATATCTAATAGAGAAAGATTTGTCCATAAGTTTTCCAGTTGCTGGATCTATAAATGCTAG
CircID chr21:39228500|39229436
ORF Type ORF2
Protein Length 35
Nucleotide Length 108
Protein Sequence MSISFPVAGSINASFRQQSVGGPTSYRIPTILTNS
Nucleotide Sequence TTGTCCATAAGTTTTCCAGTTGCTGGATCTATAAATGCTAGTTTTAGGCAACAGAGTGTAGGGGGCCCAACTTCATATCGTATTCCAACTATTTTAACCAATTCTTGA
CircID chr21:39228500|39229436
ORF Type ORF3
Protein Length 66
Nucleotide Length 198
Protein Sequence MVKIVGIRYEVGPPTLCCLKLAFIDPATGKLMDKSFSIRYHDMPDVIDFLVLRQFYDEARQRNWQS
Nucleotide Sequence TTGGTTAAAATAGTTGGAATACGATATGAAGTTGGGCCCCCTACACTCTGTTGCCTAAAACTAGCATTTATAGATCCAGCAACTGGAAAACTTATGGACAAATCTTTCTCTATTAGATATCATGATATGCCAGATGTTATTGACTTTCTTGTATTGCGTCAATTTTATGATGAAGCAAGACAGAGGAATTGGCAGTCT
CircID chr21:39228500|39229436
ORF Type ORF4
Protein Length 39
Nucleotide Length 117
Protein Sequence MENLWTNLSLLDIMICQMLLTFLYCVNFMMKQDRGIGSL
Nucleotide Sequence CTGGAAAACTTATGGACAAATCTTTCTCTATTAGATATCATGATATGCCAGATGTTATTGACTTTCTTGTATTGCGTCAATTTTATGATGAAGCAAGACAGAGGAATTGGCAGTCTT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr21:39228500|39229436 U2AF2 15 1 1
chr21:39228500|39229436 ELAVL1 4 4 1
chr21:39228500|39229436 NUMA1 2 0 0
chr21:39228500|39229436 FAM120A 1 0 1
chr21:39228500|39229436 PRPF8 0 4 3
chr21:39228500|39229436 TNRC6A 1 0 0
chr21:39228500|39229436 FMR1 0 1 3
chr21:39228500|39229436 FUS 4 2 0
chr21:39228500|39229436 DGCR8 2 2 0
chr21:39228500|39229436 SRSF1 1 1 4
chr21:39228500|39229436 NOP58 1 0 2
chr21:39228500|39229436 NONO 2 0 0
chr21:39228500|39229436 NOP56 1 3 1
chr21:39228500|39229436 SRSF9 0 1 2
chr21:39228500|39229436 HNRNPU 1 0 0
chr21:39228500|39229436 DDX54 2 0 3
chr21:39228500|39229436 HNRNPA2B1 5 0 0
chr21:39228500|39229436 SF3A3 1 1 0
chr21:39228500|39229436 HNRNPD 1 0 0
chr21:39228500|39229436 YWHAG 1 0 0
chr21:39228500|39229436 HNRNPUL1 2 0 0
chr21:39228500|39229436 XRN2 0 1 0
chr21:39228500|39229436 LARP7 0 1 0
chr21:39228500|39229436 SMNDC1 1 0 1
chr21:39228500|39229436 HNRNPA1 3 0 0
chr21:39228500|39229436 LIN28B 0 2 2
chr21:39228500|39229436 RANGAP1 0 1 0
chr21:39228500|39229436 FXR2 0 1 0
chr21:39228500|39229436 IGF2BP2 2 0 2
chr21:39228500|39229436 FTO 2 0 0
chr21:39228500|39229436 TARDBP 7 0 1
chr21:39228500|39229436 TAF15 1 0 0
chr21:39228500|39229436 KHSRP 4 0 0
chr21:39228500|39229436 CNBP 1 0 0
chr21:39228500|39229436 SLTM 1 0 0
chr21:39228500|39229436 EIF4G2 1 0 0
chr21:39228500|39229436 DDX42 1 1 0
chr21:39228500|39229436 CSTF2T 3 0 1
chr21:39228500|39229436 TIA1 3 2 0
chr21:39228500|39229436 RBM27 1 0 0
chr21:39228500|39229436 RBM22 0 2 0
chr21:39228500|39229436 TIAL1 1 0 0
chr21:39228500|39229436 AGO2 3 1 0
chr21:39228500|39229436 AGO1 1 0 0
chr21:39228500|39229436 EIF4A3 2 3 4
chr21:39228500|39229436 FBL 2 2 1
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab