CircRNA Information

General Information
circRNA Basic Information
CircID chr21:41279874|41280112
Strand +
CircType exon
Host Gene ENSG00000182240.14;
Algorism CIRI2;
Sequence AGACGTGTTTTACACATGGCTGTCAAGCAAGTTTCTCTTGGCCTAATTGTTCCTCTGGCAAATAATCAATCCTGAGAAGTTCCTTTACAAAATACCTAAAAAGTAGACTGTGCCAAAAACGTGGGGTGAAATGAGGTGCCCACGGCATCCTGGGGACGTTCTTGGCTGATGCGGACCTCCGTGCCCCACTGCCAACTGAGGGGTGGGACCTCTCTTCTGGCTCCTTCTTGCCCTGCCCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr21:41279874|41280112 hsa-miR-31-5p 0 0 1
chr21:41279874|41280112 hsa-miR-31-3p 0 0 1
chr21:41279874|41280112 hsa-miR-96-5p 0 0 1
chr21:41279874|41280112 hsa-miR-96-3p 0 0 1
chr21:41279874|41280112 hsa-miR-34a-5p 0 0 1
chr21:41279874|41280112 hsa-miR-34a-3p 0 0 1
chr21:41279874|41280112 hsa-miR-182-5p 0 0 1
chr21:41279874|41280112 hsa-miR-182-3p 0 0 1
chr21:41279874|41280112 hsa-miR-449a 0 0 1
chr21:41279874|41280112 hsa-miR-564 0 1 1
chr21:41279874|41280112 hsa-miR-662 0 1 1
chr21:41279874|41280112 hsa-miR-449b-5p 0 0 1
chr21:41279874|41280112 hsa-miR-449b-3p 0 0 1
chr21:41279874|41280112 hsa-miR-1271-5p 0 0 1
chr21:41279874|41280112 hsa-miR-1271-3p 0 0 1
chr21:41279874|41280112 hsa-miR-934 0 0 1
chr21:41279874|41280112 hsa-miR-1202 0 0 1
chr21:41279874|41280112 hsa-miR-1266-5p 0 0 1
chr21:41279874|41280112 hsa-miR-1266-3p 0 0 1
chr21:41279874|41280112 hsa-miR-486-3p 0 0 1
chr21:41279874|41280112 hsa-miR-331-5p 0 0 1
chr21:41279874|41280112 hsa-miR-1224-3p 0 0 1
chr21:41279874|41280112 hsa-miR-1207-5p 1 1 1
chr21:41279874|41280112 hsa-miR-34c-5p 0 0 1
chr21:41279874|41280112 hsa-miR-1260 0 0 1
chr21:41279874|41280112 hsa-miR-1280 0 0 1
chr21:41279874|41280112 hsa-miR-1295 0 0 1
chr21:41279874|41280112 hsa-miR-622 1 0 0
chr21:41279874|41280112 hsa-miR-663a 1 0 0
chr21:41279874|41280112 hsa-miR-658 1 0 0
chr21:41279874|41280112 hsa-miR-762 1 0 0
chr21:41279874|41280112 hsa-miR-940 1 0 0
chr21:41279874|41280112 hsa-miR-1260a 0 1 0
chr21:41279874|41280112 hsa-miR-3132 1 0 0
chr21:41279874|41280112 hsa-miR-4260 1 1 0
chr21:41279874|41280112 hsa-miR-1268b 1 0 0
chr21:41279874|41280112 hsa-miR-4518 1 1 0
chr21:41279874|41280112 hsa-miR-6127 1 0 0
chr21:41279874|41280112 hsa-miR-7150 1 0 0
chr21:41279874|41280112 hsa-miR-9899 1 0 0
chr21:41279874|41280112 hsa-miR-12120 1 0 0
chr21:41279874|41280112 hsa-miR-134-3p 0 1 0
chr21:41279874|41280112 hsa-miR-6840-3p 0 1 0
chr21:41279874|41280112 hsa-miR-323a-5p 1 0 0
chr21:41279874|41280112 hsa-miR-6825-5p 1 0 0
chr21:41279874|41280112 hsa-miR-505-5p 0 1 0
chr21:41279874|41280112 hsa-miR-6727-5p 1 0 0
chr21:41279874|41280112 hsa-miR-6721-5p 1 0 0
chr21:41279874|41280112 hsa-miR-197-5p 1 0 0
chr21:41279874|41280112 hsa-miR-3151-5p 0 1 0
chr21:41279874|41280112 hsa-miR-4711-5p 0 1 0
chr21:41279874|41280112 hsa-miR-3126-5p 1 0 0
chr21:41279874|41280112 hsa-miR-6786-5p 1 1 0
chr21:41279874|41280112 hsa-miR-194-3p 0 1 0
chr21:41279874|41280112 hsa-miR-2355-5p 0 1 0
chr21:41279874|41280112 hsa-miR-1296-3p 0 1 0
chr21:41279874|41280112 hsa-miR-4433a-5p 0 1 0
chr21:41279874|41280112 hsa-miR-4763-3p 1 0 0
chr21:41279874|41280112 hsa-miR-6816-5p 1 0 0
chr21:41279874|41280112 hsa-miR-6775-5p 1 1 0
chr21:41279874|41280112 hsa-miR-1343-5p 1 0 0
chr21:41279874|41280112 hsa-miR-6756-5p 1 0 0
chr21:41279874|41280112 hsa-miR-6722-3p 1 0 0
chr21:41279874|41280112 hsa-miR-6808-5p 1 0 0
chr21:41279874|41280112 hsa-miR-6875-5p 1 0 0
chr21:41279874|41280112 hsa-miR-6879-5p 1 1 0
chr21:41279874|41280112 hsa-miR-10396a-5p 1 0 0
chr21:41279874|41280112 hsa-miR-10396b-5p 1 0 0
chr21:41279874|41280112 hsa-miR-1909-3p 1 0 0
chr21:41279874|41280112 hsa-miR-328-5p 1 0 0
chr21:41279874|41280112 hsa-miR-4632-5p 0 1 0
chr21:41279874|41280112 hsa-miR-4649-5p 1 0 0
chr21:41279874|41280112 hsa-miR-4726-5p 1 0 0
chr21:41279874|41280112 hsa-miR-6735-5p 0 1 0
chr21:41279874|41280112 hsa-miR-4436b-3p 0 1 0
chr21:41279874|41280112 hsa-miR-6845-5p 0 1 0
chr21:41279874|41280112 hsa-miR-365a-5p 1 0 0
chr21:41279874|41280112 hsa-miR-6859-5p 1 1 0
chr21:41279874|41280112 hsa-miR-6503-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr21:41279874|41280112
ORF Type ORF1
Protein Length 30
Nucleotide Length 90
Protein Sequence MGTFLADADLRAPLPTEGWDLSSGSFLPCP
Nucleotide Sequence CTGGGGACGTTCTTGGCTGATGCGGACCTCCGTGCCCCACTGCCAACTGAGGGGTGGGACCTCTCTTCTGGCTCCTTCTTGCCCTGCCCT
CircID chr21:41279874|41280112
ORF Type ORF2
Protein Length 41
Nucleotide Length 126
Protein Sequence MPWAPHFTPRFWHSLLFRYFVKELLRIDYLPEEQLGQEKLA
Nucleotide Sequence ATGCCGTGGGCACCTCATTTCACCCCACGTTTTTGGCACAGTCTACTTTTTAGGTATTTTGTAAAGGAACTTCTCAGGATTGATTATTTGCCAGAGGAACAATTAGGCCAAGAGAAACTTGCTTGA
CircID chr21:41279874|41280112
ORF Type ORF3
Protein Length 36
Nucleotide Length 111
Protein Sequence MAVGHGGPHQPRTSPGCRGHLISPHVFGTVYFLGIL
Nucleotide Sequence TTGGCAGTGGGGCACGGAGGTCCGCATCAGCCAAGAACGTCCCCAGGATGCCGTGGGCACCTCATTTCACCCCACGTTTTTGGCACAGTCTACTTTTTAGGTATTTTGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab