CircRNA Information

General Information
circRNA Basic Information
CircID chr21:41467734|41467853
Strand -
CircType exon
Host Gene ENSG00000184012.10;
Algorism CIRI2;
Sequence CCTCATTTGTCGATAAATCCAGTCCGTGAATACCATCACATTCCCGTACACTCCTGGTCTGTAAGCTTTGGCACAGCCAGAACCCCAGCTTGTATCCCCTATCAGCCACCAGATATTGTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr21:41467734|41467853 hsa-miR-122-5p 0 0 1
chr21:41467734|41467853 hsa-miR-122-3p 0 0 1
chr21:41467734|41467853 hsa-miR-149-5p 0 0 1
chr21:41467734|41467853 hsa-miR-149-3p 0 0 1
chr21:41467734|41467853 hsa-miR-206 0 0 1
chr21:41467734|41467853 hsa-miR-381-5p 0 0 1
chr21:41467734|41467853 hsa-miR-381-3p 0 0 1
chr21:41467734|41467853 hsa-miR-600 0 1 1
chr21:41467734|41467853 hsa-miR-613 0 0 1
chr21:41467734|41467853 hsa-miR-300 0 0 1
chr21:41467734|41467853 hsa-miR-665 0 0 1
chr21:41467734|41467853 hsa-miR-1227-5p 0 0 1
chr21:41467734|41467853 hsa-miR-1227-3p 0 0 1
chr21:41467734|41467853 hsa-miR-1290 0 0 1
chr21:41467734|41467853 hsa-miR-1243 0 0 1
chr21:41467734|41467853 hsa-miR-338-5p 1 1 1
chr21:41467734|41467853 hsa-miR-876-5p 0 0 1
chr21:41467734|41467853 hsa-miR-1 0 0 1
chr21:41467734|41467853 hsa-miR-637 1 0 0
chr21:41467734|41467853 hsa-miR-3170 1 1 0
chr21:41467734|41467853 hsa-miR-3652 1 0 0
chr21:41467734|41467853 hsa-miR-4515 1 1 0
chr21:41467734|41467853 hsa-miR-4525 1 0 0
chr21:41467734|41467853 hsa-miR-4669 1 0 0
chr21:41467734|41467853 hsa-miR-4681 0 1 0
chr21:41467734|41467853 hsa-miR-378j 0 1 0
chr21:41467734|41467853 hsa-miR-8075 1 0 0
chr21:41467734|41467853 hsa-miR-4433b-3p 1 1 0
chr21:41467734|41467853 hsa-miR-4731-5p 1 0 0
chr21:41467734|41467853 hsa-miR-7155-5p 0 1 0
chr21:41467734|41467853 hsa-miR-4433a-3p 1 1 0
chr21:41467734|41467853 hsa-miR-4786-5p 0 1 0
chr21:41467734|41467853 hsa-miR-7160-5p 1 0 0
chr21:41467734|41467853 hsa-miR-8069 1 0 0
chr21:41467734|41467853 hsa-miR-6716-5p 1 0 0
chr21:41467734|41467853 hsa-miR-6732-5p 1 1 0
chr21:41467734|41467853 hsa-miR-6782-5p 1 0 0
chr21:41467734|41467853 hsa-miR-3944-3p 1 0 0
chr21:41467734|41467853 hsa-miR-4743-5p 1 0 0
chr21:41467734|41467853 hsa-miR-6824-5p 1 0 0
chr21:41467734|41467853 hsa-miR-3162-5p 1 0 0
chr21:41467734|41467853 hsa-miR-1288-5p 0 1 0
chr21:41467734|41467853 hsa-miR-6792-5p 1 0 0
chr21:41467734|41467853 hsa-miR-4763-3p 1 0 0
chr21:41467734|41467853 hsa-miR-6769b-5p 1 0 0
chr21:41467734|41467853 hsa-miR-6787-5p 1 0 0
chr21:41467734|41467853 hsa-miR-5001-5p 1 1 0
chr21:41467734|41467853 hsa-miR-6756-5p 1 0 0
chr21:41467734|41467853 hsa-miR-6722-3p 1 0 0
chr21:41467734|41467853 hsa-miR-6779-5p 1 0 0
chr21:41467734|41467853 hsa-miR-6780a-5p 1 0 0
chr21:41467734|41467853 hsa-miR-6795-5p 1 0 0
chr21:41467734|41467853 hsa-miR-6846-5p 1 0 0
chr21:41467734|41467853 hsa-miR-6848-5p 1 0 0
chr21:41467734|41467853 hsa-miR-6883-5p 1 0 0
chr21:41467734|41467853 hsa-miR-6855-5p 0 1 0
chr21:41467734|41467853 hsa-miR-7151-3p 0 1 0
chr21:41467734|41467853 hsa-miR-6504-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr21:41467734|41467853
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MSINPVREYHHIPVHSWSVSFGTARTPACIPYQPPDIV
Nucleotide Sequence TTGTCGATAAATCCAGTCCGTGAATACCATCACATTCCCGTACACTCCTGGTCTGTAAGCTTTGGCACAGCCAGAACCCCAGCTTGTATCCCCTATCAGCCACCAGATATTGTT
CircID chr21:41467734|41467853
ORF Type ORF2
Protein Length 35
Nucleotide Length 105
Protein Sequence MIGDTSWGSGCAKAYRPGVYGNVMVFTDWIYRQMR
Nucleotide Sequence CTGATAGGGGATACAAGCTGGGGTTCTGGCTGTGCCAAAGCTTACAGACCAGGAGTGTACGGGAATGTGATGGTATTCACGGACTGGATTTATCGACAAATGAGG
CircID chr21:41467734|41467853
ORF Type ORF3
Protein Length 37
Nucleotide Length 111
Protein Sequence MVADRGYKLGFWLCQSLQTRSVRECDGIHGLDLSTNE
Nucleotide Sequence CTGGTGGCTGATAGGGGATACAAGCTGGGGTTCTGGCTGTGCCAAAGCTTACAGACCAGGAGTGTACGGGAATGTGATGGTATTCACGGACTGGATTTATCGACAAATGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab