CircRNA Information

General Information
circRNA Basic Information
CircID chr21:41854645|41854773
Strand +
CircType exon
Host Gene ENSG00000141956.12;
Algorism CIRI2;
Sequence GAGGATGACTGCAACTGGATGATGCTGGTGCGGCCAGCGGCGGAGGCCGAGCACCAGAACCTGACGGCCTACCAGCACGGCAGCGACGTGTACTTCACCACCTCCAGAGACATCCCCCCGGGTACCGAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr21:41854645|41854773 hsa-miR-326 0 0 1
chr21:41854645|41854773 hsa-miR-593-5p 0 0 1
chr21:41854645|41854773 hsa-miR-593-3p 0 0 1
chr21:41854645|41854773 hsa-miR-634 0 0 1
chr21:41854645|41854773 hsa-miR-639 1 0 1
chr21:41854645|41854773 hsa-miR-1226-5p 0 0 1
chr21:41854645|41854773 hsa-miR-1226-3p 0 0 1
chr21:41854645|41854773 hsa-miR-1234-3p 0 0 1
chr21:41854645|41854773 hsa-miR-1234 0 0 1
chr21:41854645|41854773 hsa-miR-145-5p 0 0 1
chr21:41854645|41854773 hsa-miR-423-3p 0 0 1
chr21:41854645|41854773 hsa-miR-941 0 0 1
chr21:41854645|41854773 hsa-miR-338-3p 0 0 1
chr21:41854645|41854773 hsa-miR-330-5p 1 0 1
chr21:41854645|41854773 hsa-miR-138 0 0 1
chr21:41854645|41854773 hsa-miR-516b 0 0 1
chr21:41854645|41854773 hsa-miR-1295 0 0 1
chr21:41854645|41854773 hsa-miR-608 1 0 0
chr21:41854645|41854773 hsa-miR-637 1 0 0
chr21:41854645|41854773 hsa-miR-1538 1 0 0
chr21:41854645|41854773 hsa-miR-4253 1 0 0
chr21:41854645|41854773 hsa-miR-3713 1 0 0
chr21:41854645|41854773 hsa-miR-4450 1 0 0
chr21:41854645|41854773 hsa-miR-4525 1 0 0
chr21:41854645|41854773 hsa-miR-4741 1 0 0
chr21:41854645|41854773 hsa-miR-5698 1 0 0
chr21:41854645|41854773 hsa-miR-6734-5p 1 0 0
chr21:41854645|41854773 hsa-miR-1247-3p 1 0 0
chr21:41854645|41854773 hsa-miR-323a-5p 1 0 0
chr21:41854645|41854773 hsa-miR-3150a-3p 1 0 0
chr21:41854645|41854773 hsa-miR-6825-5p 1 0 0
chr21:41854645|41854773 hsa-miR-6799-5p 1 0 0
chr21:41854645|41854773 hsa-miR-7851-3p 1 0 0
chr21:41854645|41854773 hsa-miR-7114-5p 1 0 0
chr21:41854645|41854773 hsa-miR-6732-5p 1 0 0
chr21:41854645|41854773 hsa-miR-6798-5p 1 0 0
chr21:41854645|41854773 hsa-miR-5006-5p 1 0 0
chr21:41854645|41854773 hsa-miR-6852-5p 1 0 0
chr21:41854645|41854773 hsa-miR-7109-5p 1 0 0
chr21:41854645|41854773 hsa-miR-6784-5p 1 0 0
chr21:41854645|41854773 hsa-miR-4787-5p 1 0 0
chr21:41854645|41854773 hsa-miR-516b-5p 1 0 0
chr21:41854645|41854773 hsa-miR-654-5p 1 0 0
chr21:41854645|41854773 hsa-miR-4750-5p 1 0 0
chr21:41854645|41854773 hsa-miR-518c-5p 1 0 0
chr21:41854645|41854773 hsa-miR-6769b-5p 1 0 0
chr21:41854645|41854773 hsa-miR-6812-5p 1 0 0
chr21:41854645|41854773 hsa-miR-6870-5p 1 0 0
chr21:41854645|41854773 hsa-miR-6752-5p 1 0 0
chr21:41854645|41854773 hsa-miR-6803-5p 1 0 0
chr21:41854645|41854773 hsa-miR-6842-5p 1 0 0
chr21:41854645|41854773 hsa-miR-6851-5p 1 0 0
chr21:41854645|41854773 hsa-miR-7110-5p 1 0 0
chr21:41854645|41854773 hsa-miR-6751-5p 1 0 0
chr21:41854645|41854773 hsa-miR-328-5p 1 0 0
chr21:41854645|41854773 hsa-miR-6795-5p 1 0 0
chr21:41854645|41854773 hsa-miR-6846-5p 1 0 0
chr21:41854645|41854773 hsa-miR-6848-5p 1 0 0
chr21:41854645|41854773 hsa-miR-6883-5p 1 0 0
chr21:41854645|41854773 hsa-miR-6887-5p 1 0 0
chr21:41854645|41854773 hsa-miR-6885-5p 1 0 0
chr21:41854645|41854773 hsa-miR-6791-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr21:41854645|41854773
ORF Type ORF1
Protein Length 37
Nucleotide Length 111
Protein Sequence MMLVRPAAEAEHQNLTAYQHGSDVYFTTSRDIPPGTE
Nucleotide Sequence ATGATGCTGGTGCGGCCAGCGGCGGAGGCCGAGCACCAGAACCTGACGGCCTACCAGCACGGCAGCGACGTGTACTTCACCACCTCCAGAGACATCCCCCCGGGTACCGAG
CircID chr21:41854645|41854773
ORF Type ORF2
Protein Length 40
Nucleotide Length 120
Protein Sequence MQLDDAGAASGGGRAPEPDGLPARQRRVLHHLQRHPPGYR
Nucleotide Sequence CTGCAACTGGATGATGCTGGTGCGGCCAGCGGCGGAGGCCGAGCACCAGAACCTGACGGCCTACCAGCACGGCAGCGACGTGTACTTCACCACCTCCAGAGACATCCCCCCGGGTACCGA
CircID chr21:41854645|41854773
ORF Type ORF3
Protein Length 25
Nucleotide Length 75
Protein Sequence MVGRQVLVLGLRRWPHQHHPVAVIL
Nucleotide Sequence CTGGTAGGCCGTCAGGTTCTGGTGCTCGGCCTCCGCCGCTGGCCGCACCAGCATCATCCAGTTGCAGTCATCCTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab