CircNet

General Information

circRNA Basic Information

CircID	chr21:42859662\|42863596
Strand	-
CircType	exon
Host Gene	ENSG00000160193.11;
Algorism	find_circ;CIRI2;DCC;
Sequence	GACCGTGGCAAGGAGGTGTACAGCCCTGACTTTCATAGCCTCGGAGGAGAAGGTCTTGGTGGCCGACAAGTCTGGAGACGTCTACTCCTTTTCGGTGCTGGAGCCACACGGGTGTGGCCGTCTAGAGCTGGGGCACCTGTCTATGCTGTTAGATGTGGCTGTGAGTCCTGATGACCGCTTCATCCTCACTGCCGACCGGGACGAGAAGATCCGAGTCAGCTGGGCCGCGGCGCCCCATAGCATCGAGTCCTTCTGCTTGGGGCACACAGAGTTTGTGAGCCGTATCTCCGTGGTGCCAACTCAGCCCGGGCTGCTTCTGTCCTCCTCTGGG

circRNA Expression in different cancers

circRNA-miRNA-gene regulatory network

Target miRNAs

CircID	miRNA	PITA	miRanda	targetScan
chr21:42859662\|42863596	hsa-miR-139-3p	0	1	1

Target Genes

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Target miRNA Expression in different cancers

circRNA Open Reading Frame (ORF)

CircID	chr21:42859662\|42863596
ORF Type	ORF1
Protein Length	63
Nucleotide Length	189
Protein Sequence	MLLDVAVSPDDRFILTADRDEKIRVSWAAAPHSIESFCLGHTEFVSRISVVPTQPGLLLSSSG
Nucleotide Sequence	ATGCTGTTAGATGTGGCTGTGAGTCCTGATGACCGCTTCATCCTCACTGCCGACCGGGACGAGAAGATCCGAGTCAGCTGGGCCGCGGCGCCCCATAGCATCGAGTCCTTCTGCTTGGGGCACACAGAGTTTGTGAGCCGTATCTCCGTGGTGCCAACTCAGCCCGGGCTGCTTCTGTCCTCCTCTGGG

CircID	chr21:42859662\|42863596
ORF Type	ORF2
Protein Length	54
Nucleotide Length	162
Protein Sequence	MLWGAAAQLTRIFSSRSAVRMKRSSGLTATSNSIDRCPSSRRPHPCGSSTEKE*
Nucleotide Sequence	ATGCTATGGGGCGCCGCGGCCCAGCTGACTCGGATCTTCTCGTCCCGGTCGGCAGTGAGGATGAAGCGGTCATCAGGACTCACAGCCACATCTAACAGCATAGACAGGTGCCCCAGCTCTAGACGGCCACACCCGTGTGGCTCCAGCACCGAAAAGGAGTAG

CircID	chr21:42859662\|42863596
ORF Type	ORF3
Protein Length	36
Nucleotide Length	108
Protein Sequence	MTASSSLPTGTRRSESAGPRRPIASSPSAWGTQSL*
Nucleotide Sequence	ATGACCGCTTCATCCTCACTGCCGACCGGGACGAGAAGATCCGAGTCAGCTGGGCCGCGGCGCCCCATAGCATCGAGTCCTTCTGCTTGGGGCACACAGAGTTTGTGA

CircID	chr21:42859662\|42863596
ORF Type	ORF4
Protein Length	30
Nucleotide Length	90
Protein Sequence	MGRRGPADSDLLVPVGSEDEAVIRTHSHI*
Nucleotide Sequence	ATGGGGCGCCGCGGCCCAGCTGACTCGGATCTTCTCGTCCCGGTCGGCAGTGAGGATGAAGCGGTCATCAGGACTCACAGCCACATCTAA

CircID	chr21:42859662\|42863596
ORF Type	ORF5
Protein Length	52
Nucleotide Length	156
Protein Sequence	VYSPDFHSLGGEGLGGRQVWRRLLLFGAGATRVWPSRAGAPVYAVRCGCES*
Nucleotide Sequence	GTGTACAGCCCTGACTTTCATAGCCTCGGAGGAGAAGGTCTTGGTGGCCGACAAGTCTGGAGACGTCTACTCCTTTTCGGTGCTGGAGCCACACGGGTGTGGCCGTCTAGAGCTGGGGCACCTGTCTATGCTGTTAGATGTGGCTGTGAGTCCTGA

RNA Binding Protein (RBP) of circRNA

CircID	RBP	Number of Upstream Sites	Number of Downstream Sites	Number of Circ Exons Sites
chr21:42859662\|42863596	NOP56	0	2	0
chr21:42859662\|42863596	ELAVL1	1	3	0
chr21:42859662\|42863596	SF3B4	2	0	0
chr21:42859662\|42863596	CELF2	0	1	0
chr21:42859662\|42863596	PRPF8	0	1	0
chr21:42859662\|42863596	UPF1	1	0	0
chr21:42859662\|42863596	TAF15	1	0	0
chr21:42859662\|42863596	FUS	2	1	0
chr21:42859662\|42863596	NOP58	2	1	3
chr21:42859662\|42863596	U2AF2	5	3	0
chr21:42859662\|42863596	DDX54	0	0	8
chr21:42859662\|42863596	RBM10	5	3	0
chr21:42859662\|42863596	HNRNPM	0	1	0
chr21:42859662\|42863596	PTBP1	0	1	0
chr21:42859662\|42863596	HNRNPC	1	1	0
chr21:42859662\|42863596	DHX9	2	0	1
chr21:42859662\|42863596	ACIN1	1	0	2
chr21:42859662\|42863596	IGF2BP2	0	0	1
chr21:42859662\|42863596	FTO	1	1	0
chr21:42859662\|42863596	TARDBP	0	6	0
chr21:42859662\|42863596	YTHDC1	0	0	1
chr21:42859662\|42863596	RBFOX2	2	1	0
chr21:42859662\|42863596	CNBP	1	1	0
chr21:42859662\|42863596	CSTF2T	0	0	1
chr21:42859662\|42863596	EIF4A3	5	7	5
chr21:42859662\|42863596	FBL	1	3	3

CircRNA Information