CircRNA Information

General Information
circRNA Basic Information
CircID chr21:42903887|42904162
Strand -
CircType exon
Host Gene ENSG00000160194.16;
Algorism CIRI2;
Sequence CTGTCCACACAAAATCAGGGTTGTCTGCGCCACCGAAGGGCAGCCCAGCGCCTGCTGTGTTGGCAGAAGAGGCCAGAGCAGAGGGGCAGCTGCAAGCCAGTCCTCCTGGGGCGGCAGAGGGGCATCTGGAAAAACCCGTGCCAGAGCCCCAGCGCAAGGCGGCCCCTCCCCTGCCCAGAAAGGAAACCTCAGGGACGCAGGGAATAGAAGGCCACCTGAAGGGTGGACAGGCAATCGTGGAAGATCAGATACCACCAAGCAATTTGGAGACAGTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr21:42903887|42904162 hsa-miR-22-5p 0 0 1
chr21:42903887|42904162 hsa-miR-22-3p 0 0 1
chr21:42903887|42904162 hsa-miR-214-5p 0 0 1
chr21:42903887|42904162 hsa-miR-214-3p 0 0 1
chr21:42903887|42904162 hsa-miR-564 0 0 1
chr21:42903887|42904162 hsa-miR-599 0 0 1
chr21:42903887|42904162 hsa-miR-612 0 1 1
chr21:42903887|42904162 hsa-miR-1301-5p 0 0 1
chr21:42903887|42904162 hsa-miR-1301-3p 0 0 1
chr21:42903887|42904162 hsa-miR-892b 0 0 1
chr21:42903887|42904162 hsa-miR-665 0 1 1
chr21:42903887|42904162 hsa-miR-760 0 0 1
chr21:42903887|42904162 hsa-miR-938 0 0 1
chr21:42903887|42904162 hsa-miR-302f 0 0 1
chr21:42903887|42904162 hsa-miR-125a-3p 0 0 1
chr21:42903887|42904162 hsa-miR-423-5p 0 0 1
chr21:42903887|42904162 hsa-miR-525-5p 0 0 1
chr21:42903887|42904162 hsa-miR-767-3p 0 0 1
chr21:42903887|42904162 hsa-miR-876-3p 0 0 1
chr21:42903887|42904162 hsa-miR-1207-5p 0 0 1
chr21:42903887|42904162 hsa-miR-324-3p 0 0 1
chr21:42903887|42904162 hsa-miR-520a-5p 0 0 1
chr21:42903887|42904162 hsa-miR-125a-5p 0 0 1
chr21:42903887|42904162 hsa-miR-515-5p 0 0 1
chr21:42903887|42904162 hsa-miR-1274a 0 0 1
chr21:42903887|42904162 hsa-miR-323-5p 0 0 1
chr21:42903887|42904162 hsa-miR-125b 0 0 1
chr21:42903887|42904162 hsa-miR-644 0 0 1
chr21:42903887|42904162 hsa-miR-1285 0 0 1
chr21:42903887|42904162 hsa-miR-147 0 0 1
chr21:42903887|42904162 hsa-miR-764 0 1 0
chr21:42903887|42904162 hsa-miR-1913 1 1 0
chr21:42903887|42904162 hsa-miR-544b 0 1 0
chr21:42903887|42904162 hsa-miR-3166 0 1 0
chr21:42903887|42904162 hsa-miR-3169 0 1 0
chr21:42903887|42904162 hsa-miR-3193 0 1 0
chr21:42903887|42904162 hsa-miR-4515 0 1 0
chr21:42903887|42904162 hsa-miR-1587 0 1 0
chr21:42903887|42904162 hsa-miR-4741 1 0 0
chr21:42903887|42904162 hsa-miR-5047 0 1 0
chr21:42903887|42904162 hsa-miR-6860 0 1 0
chr21:42903887|42904162 hsa-miR-128-1-5p 0 1 0
chr21:42903887|42904162 hsa-miR-6861-5p 0 1 0
chr21:42903887|42904162 hsa-miR-1225-3p 1 1 0
chr21:42903887|42904162 hsa-miR-7154-3p 0 1 0
chr21:42903887|42904162 hsa-miR-6721-5p 0 1 0
chr21:42903887|42904162 hsa-miR-877-3p 0 1 0
chr21:42903887|42904162 hsa-miR-185-3p 0 1 0
chr21:42903887|42904162 hsa-miR-6868-3p 0 1 0
chr21:42903887|42904162 hsa-miR-6798-5p 0 1 0
chr21:42903887|42904162 hsa-miR-6728-3p 0 1 0
chr21:42903887|42904162 hsa-miR-6882-3p 1 1 0
chr21:42903887|42904162 hsa-miR-4783-3p 1 0 0
chr21:42903887|42904162 hsa-miR-6514-3p 0 1 0
chr21:42903887|42904162 hsa-miR-4690-5p 0 1 0
chr21:42903887|42904162 hsa-miR-6878-3p 0 1 0
chr21:42903887|42904162 hsa-miR-6769a-3p 0 1 0
chr21:42903887|42904162 hsa-miR-1237-3p 0 1 0
chr21:42903887|42904162 hsa-miR-6828-3p 0 1 0
chr21:42903887|42904162 hsa-miR-3180-5p 0 1 0
chr21:42903887|42904162 hsa-miR-2276-5p 0 1 0
chr21:42903887|42904162 hsa-miR-4632-3p 1 0 0
chr21:42903887|42904162 hsa-miR-3160-5p 0 1 0
chr21:42903887|42904162 hsa-miR-6738-3p 0 1 0
chr21:42903887|42904162 hsa-miR-4749-3p 0 1 0
chr21:42903887|42904162 hsa-miR-670-5p 0 1 0
chr21:42903887|42904162 hsa-miR-6731-3p 0 1 0
chr21:42903887|42904162 hsa-miR-4482-3p 0 1 0
chr21:42903887|42904162 hsa-miR-4763-3p 1 1 0
chr21:42903887|42904162 hsa-miR-6815-5p 1 0 0
chr21:42903887|42904162 hsa-miR-6722-3p 0 1 0
chr21:42903887|42904162 hsa-miR-3127-3p 1 0 0
chr21:42903887|42904162 hsa-miR-3620-5p 0 1 0
chr21:42903887|42904162 hsa-miR-5189-5p 0 1 0
chr21:42903887|42904162 hsa-miR-1909-3p 0 1 0
chr21:42903887|42904162 hsa-miR-3187-5p 0 1 0
chr21:42903887|42904162 hsa-miR-2682-3p 0 1 0
chr21:42903887|42904162 hsa-miR-6791-5p 1 0 0
chr21:42903887|42904162 hsa-miR-4757-5p 0 1 0
chr21:42903887|42904162 hsa-miR-6805-3p 0 1 0
chr21:42903887|42904162 hsa-miR-6744-3p 0 1 0
chr21:42903887|42904162 hsa-miR-3619-5p 0 1 0
chr21:42903887|42904162 hsa-miR-6781-3p 0 1 0
chr21:42903887|42904162 hsa-miR-6824-3p 1 0 0
chr21:42903887|42904162 hsa-miR-4659b-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr21:42903887|42904162
ORF Type ORF1
Protein Length 68
Nucleotide Length 207
Protein Sequence LSTQNQGCLRHRRAAQRLLCWQKRPEQRGSCKPVLLGRQRGIWKNPCQSPSARRPLPCPERKPQGRRE
Nucleotide Sequence CTGTCCACACAAAATCAGGGTTGTCTGCGCCACCGAAGGGCAGCCCAGCGCCTGCTGTGTTGGCAGAAGAGGCCAGAGCAGAGGGGCAGCTGCAAGCCAGTCCTCCTGGGGCGGCAGAGGGGCATCTGGAAAAACCCGTGCCAGAGCCCCAGCGCAAGGCGGCCCCTCCCCTGCCCAGAAAGGAAACCTCAGGGACGCAGGGAATAG
CircID chr21:42903887|42904162
ORF Type ORF2
Protein Length 85
Nucleotide Length 255
Protein Sequence MSAPPKGSPAPAVLAEEARAEGQLQASPPGAAEGHLEKPVPEPQRKAAPPLPRKETSGTQGIEGHLKGGQAIVEDQIPPSNLETV
Nucleotide Sequence TTGTCTGCGCCACCGAAGGGCAGCCCAGCGCCTGCTGTGTTGGCAGAAGAGGCCAGAGCAGAGGGGCAGCTGCAAGCCAGTCCTCCTGGGGCGGCAGAGGGGCATCTGGAAAAACCCGTGCCAGAGCCCCAGCGCAAGGCGGCCCCTCCCCTGCCCAGAAAGGAAACCTCAGGGACGCAGGGAATAGAAGGCCACCTGAAGGGTGGACAGGCAATCGTGGAAGATCAGATACCACCAAGCAATTTGGAGACAGTT
CircID chr21:42903887|42904162
ORF Type ORF3
Protein Length 91
Nucleotide Length 273
Protein Sequence MSPNCLVVSDLPRLPVHPSGGLLFPASLRFPFWAGEGPPCAGALARVFPDAPLPPQEDWLAAAPLLWPLLPTQQALGCPSVAQTTLILCGQ
Nucleotide Sequence CTGTCTCCAAATTGCTTGGTGGTATCTGATCTTCCACGATTGCCTGTCCACCCTTCAGGTGGCCTTCTATTCCCTGCGTCCCTGAGGTTTCCTTTCTGGGCAGGGGAGGGGCCGCCTTGCGCTGGGGCTCTGGCACGGGTTTTTCCAGATGCCCCTCTGCCGCCCCAGGAGGACTGGCTTGCAGCTGCCCCTCTGCTCTGGCCTCTTCTGCCAACACAGCAGGCGCTGGGCTGCCCTTCGGTGGCGCAGACAACCCTGATTTTGTGTGGACAG
CircID chr21:42903887|42904162
ORF Type ORF4
Protein Length 45
Nucleotide Length 138
Protein Sequence MGLWHGFFQMPLCRPRRTGLQLPLCSGLFCQHSRRWAALRWRRQP
Nucleotide Sequence CTGGGGCTCTGGCACGGGTTTTTCCAGATGCCCCTCTGCCGCCCCAGGAGGACTGGCTTGCAGCTGCCCCTCTGCTCTGGCCTCTTCTGCCAACACAGCAGGCGCTGGGCTGCCCTTCGGTGGCGCAGACAACCCTGA
CircID chr21:42903887|42904162
ORF Type ORF5
Protein Length 59
Nucleotide Length 177
Protein Sequence MGRGGAALRWGSGTGFSRCPSAAPGGLACSCPSALASSANTAGAGLPFGGADNPDFVWT
Nucleotide Sequence CTGGGCAGGGGAGGGGCCGCCTTGCGCTGGGGCTCTGGCACGGGTTTTTCCAGATGCCCCTCTGCCGCCCCAGGAGGACTGGCTTGCAGCTGCCCCTCTGCTCTGGCCTCTTCTGCCAACACAGCAGGCGCTGGGCTGCCCTTCGGTGGCGCAGACAACCCTGATTTTGTGTGGACA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab