CircRNA Information

General Information
circRNA Basic Information
CircID chr21:43761495|43761734
Strand -
CircType exon
Host Gene ENSG00000160209.17;
Algorism CIRI2;
Sequence ACGACCTGGGTACTGCCTGGGAAACCTGTCCTAAGTAAAACTATGGACCTCGCCTCGCCCACCGGCCTGCGAAGCCAGCATCTCCGTGAAGGTGGATGGAAGCGCCTTTGTCCTCATTTTGAGCTGCAAGCTGGGTCAGCGGCTCTGAAGCCCTCGAGTGACTTTCTAACCCAAGACCCAGCCCCTGGCAGGAGGAGGGTGGGTGCAGGGCTGGTGGGACAAAAAGAGGCCTCAGCAGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr21:43761495|43761734 hsa-miR-224-5p 0 0 1
chr21:43761495|43761734 hsa-miR-224-3p 0 0 1
chr21:43761495|43761734 hsa-miR-370-5p 0 0 1
chr21:43761495|43761734 hsa-miR-370-3p 0 0 1
chr21:43761495|43761734 hsa-miR-635 0 0 1
chr21:43761495|43761734 hsa-miR-668-5p 0 0 1
chr21:43761495|43761734 hsa-miR-668-3p 0 0 1
chr21:43761495|43761734 hsa-miR-1301-5p 0 0 1
chr21:43761495|43761734 hsa-miR-1301-3p 0 0 1
chr21:43761495|43761734 hsa-miR-541-5p 0 0 1
chr21:43761495|43761734 hsa-miR-541-3p 0 0 1
chr21:43761495|43761734 hsa-miR-1226-5p 0 0 1
chr21:43761495|43761734 hsa-miR-1226-3p 0 0 1
chr21:43761495|43761734 hsa-miR-1197 0 0 1
chr21:43761495|43761734 hsa-miR-1224-5p 0 0 1
chr21:43761495|43761734 hsa-miR-193a-5p 0 0 1
chr21:43761495|43761734 hsa-miR-654-5p 0 0 1
chr21:43761495|43761734 hsa-miR-1224-3p 0 0 1
chr21:43761495|43761734 hsa-miR-524-3p 0 1 1
chr21:43761495|43761734 hsa-miR-525-3p 0 1 1
chr21:43761495|43761734 hsa-miR-1260 0 0 1
chr21:43761495|43761734 hsa-miR-1280 0 0 1
chr21:43761495|43761734 hsa-miR-663a 1 0 0
chr21:43761495|43761734 hsa-miR-762 1 1 0
chr21:43761495|43761734 hsa-miR-1182 1 0 0
chr21:43761495|43761734 hsa-miR-1913 1 0 0
chr21:43761495|43761734 hsa-miR-1260b 0 1 0
chr21:43761495|43761734 hsa-miR-3197 1 0 0
chr21:43761495|43761734 hsa-miR-3621 1 0 0
chr21:43761495|43761734 hsa-miR-4514 0 1 0
chr21:43761495|43761734 hsa-miR-1587 1 0 0
chr21:43761495|43761734 hsa-miR-4660 0 1 0
chr21:43761495|43761734 hsa-miR-4673 0 1 0
chr21:43761495|43761734 hsa-miR-4692 0 1 0
chr21:43761495|43761734 hsa-miR-4721 0 1 0
chr21:43761495|43761734 hsa-miR-5787 1 1 0
chr21:43761495|43761734 hsa-miR-6085 1 1 0
chr21:43761495|43761734 hsa-miR-7703 1 0 0
chr21:43761495|43761734 hsa-miR-8072 1 0 0
chr21:43761495|43761734 hsa-miR-8089 1 0 0
chr21:43761495|43761734 hsa-miR-12116 1 0 0
chr21:43761495|43761734 hsa-miR-93-3p 1 0 0
chr21:43761495|43761734 hsa-miR-6765-5p 1 0 0
chr21:43761495|43761734 hsa-miR-125a-3p 1 0 0
chr21:43761495|43761734 hsa-miR-6089 1 1 0
chr21:43761495|43761734 hsa-miR-7160-5p 1 0 0
chr21:43761495|43761734 hsa-miR-6849-3p 1 1 0
chr21:43761495|43761734 hsa-miR-185-3p 0 1 0
chr21:43761495|43761734 hsa-miR-6798-5p 1 0 0
chr21:43761495|43761734 hsa-miR-6858-3p 1 0 0
chr21:43761495|43761734 hsa-miR-615-5p 1 0 0
chr21:43761495|43761734 hsa-miR-6786-5p 0 1 0
chr21:43761495|43761734 hsa-miR-1229-5p 1 0 0
chr21:43761495|43761734 hsa-miR-3667-3p 1 0 0
chr21:43761495|43761734 hsa-miR-6749-5p 1 0 0
chr21:43761495|43761734 hsa-miR-4743-5p 1 0 0
chr21:43761495|43761734 hsa-miR-4667-3p 0 1 0
chr21:43761495|43761734 hsa-miR-7156-3p 1 0 0
chr21:43761495|43761734 hsa-miR-6825-3p 0 1 0
chr21:43761495|43761734 hsa-miR-4646-3p 0 1 0
chr21:43761495|43761734 hsa-miR-2115-5p 0 1 0
chr21:43761495|43761734 hsa-miR-616-3p 1 0 0
chr21:43761495|43761734 hsa-miR-3158-3p 0 1 0
chr21:43761495|43761734 hsa-miR-4758-3p 1 0 0
chr21:43761495|43761734 hsa-miR-1910-5p 1 1 0
chr21:43761495|43761734 hsa-miR-6865-3p 0 1 0
chr21:43761495|43761734 hsa-miR-4649-3p 0 1 0
chr21:43761495|43761734 hsa-miR-5004-5p 0 1 0
chr21:43761495|43761734 hsa-miR-4433a-5p 1 1 0
chr21:43761495|43761734 hsa-miR-4750-3p 0 1 0
chr21:43761495|43761734 hsa-miR-3173-5p 0 1 0
chr21:43761495|43761734 hsa-miR-6779-3p 0 1 0
chr21:43761495|43761734 hsa-miR-4433b-5p 1 1 0
chr21:43761495|43761734 hsa-miR-4763-3p 1 0 0
chr21:43761495|43761734 hsa-miR-6769b-5p 1 0 0
chr21:43761495|43761734 hsa-miR-6816-5p 1 0 0
chr21:43761495|43761734 hsa-miR-5001-5p 1 0 0
chr21:43761495|43761734 hsa-miR-6813-5p 1 1 0
chr21:43761495|43761734 hsa-miR-7111-5p 1 0 0
chr21:43761495|43761734 hsa-miR-3620-5p 1 0 0
chr21:43761495|43761734 hsa-miR-1909-3p 1 0 0
chr21:43761495|43761734 hsa-miR-4649-5p 1 1 0
chr21:43761495|43761734 hsa-miR-6846-5p 1 1 0
chr21:43761495|43761734 hsa-miR-6848-5p 1 0 0
chr21:43761495|43761734 hsa-miR-6799-3p 0 1 0
chr21:43761495|43761734 hsa-miR-6893-3p 1 0 0
chr21:43761495|43761734 hsa-miR-7114-3p 1 0 0
chr21:43761495|43761734 hsa-miR-6744-3p 0 1 0
chr21:43761495|43761734 hsa-miR-6781-3p 0 1 0
chr21:43761495|43761734 hsa-miR-373-5p 1 1 0
chr21:43761495|43761734 hsa-miR-371b-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr21:43761495|43761734
ORF Type ORF1
Protein Length 76
Nucleotide Length 228
Protein Sequence MPGKPVLSKTMDLASPTGLRSQHLREGGWKRLCPHFELQAGSAALKPSSDFLTQDPAPGRRRVGAGLVGQKEASAG
Nucleotide Sequence CTGCCTGGGAAACCTGTCCTAAGTAAAACTATGGACCTCGCCTCGCCCACCGGCCTGCGAAGCCAGCATCTCCGTGAAGGTGGATGGAAGCGCCTTTGTCCTCATTTTGAGCTGCAAGCTGGGTCAGCGGCTCTGAAGCCCTCGAGTGACTTTCTAACCCAAGACCCAGCCCCTGGCAGGAGGAGGGTGGGTGCAGGGCTGGTGGGACAAAAAGAGGCCTCAGCAGGC
CircID chr21:43761495|43761734
ORF Type ORF2
Protein Length 32
Nucleotide Length 99
Protein Sequence MQLKMRTKALPSTFTEMLASQAGGRGEVHSFT
Nucleotide Sequence TTGCAGCTCAAAATGAGGACAAAGGCGCTTCCATCCACCTTCACGGAGATGCTGGCTTCGCAGGCCGGTGGGCGAGGCGAGGTCCATAGTTTTACTTAG
CircID chr21:43761495|43761734
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MPGAGSWVRKSLEGFRAADPACSSK
Nucleotide Sequence CTGCCAGGGGCTGGGTCTTGGGTTAGAAAGTCACTCGAGGGCTTCAGAGCCGCTGACCCAGCTTGCAGCTCAAAATGA
CircID chr21:43761495|43761734
ORF Type ORF4
Protein Length 65
Nucleotide Length 198
Protein Sequence LLRPLFVPPALHPPSSCQGLGLGLESHSRASEPLTQLAAQNEDKGASIHLHGDAGFAGRWARRGP
Nucleotide Sequence CTGCTGAGGCCTCTTTTTGTCCCACCAGCCCTGCACCCACCCTCCTCCTGCCAGGGGCTGGGTCTTGGGTTAGAAAGTCACTCGAGGGCTTCAGAGCCGCTGACCCAGCTTGCAGCTCAAAATGAGGACAAAGGCGCTTCCATCCACCTTCACGGAGATGCTGGCTTCGCAGGCCGGTGGGCGAGGCGAGGTCCATAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab