CircRNA Information

General Information
circRNA Basic Information
CircID chr21:44425444|44425622
Strand -
CircType exon
Host Gene ENSG00000142185.15;
Algorism CIRI2;
Sequence AAAGAGGCAGGTGCCGGCGGGGACGCTGCCTGAGCTCCCGTGGCTGTCCTCCCTGGGGGCCCTGCCCACTTCAGAGCTGGTGTTCGACCTGCATGGCCATTTGGGCTCGGGGAGGTGGAGGAGCCCAGATGTTTTGGCGGAAGGACCACAGAGGAAGTCCTTGTCCTGCGGGCGGGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr21:44425444|44425622 hsa-miR-573 0 0 1
chr21:44425444|44425622 hsa-miR-612 1 1 1
chr21:44425444|44425622 hsa-miR-617 0 0 1
chr21:44425444|44425622 hsa-miR-657 0 0 1
chr21:44425444|44425622 hsa-miR-920 0 1 1
chr21:44425444|44425622 hsa-miR-1226-5p 0 0 1
chr21:44425444|44425622 hsa-miR-1226-3p 0 0 1
chr21:44425444|44425622 hsa-miR-1286 0 1 1
chr21:44425444|44425622 hsa-miR-1321 0 0 1
chr21:44425444|44425622 hsa-miR-296-5p 0 0 1
chr21:44425444|44425622 hsa-miR-615-3p 0 1 1
chr21:44425444|44425622 hsa-miR-885-3p 0 0 1
chr21:44425444|44425622 hsa-miR-361-3p 0 1 1
chr21:44425444|44425622 hsa-miR-1207-5p 0 1 1
chr21:44425444|44425622 hsa-miR-1285 0 0 1
chr21:44425444|44425622 hsa-miR-326 0 1 0
chr21:44425444|44425622 hsa-miR-611 0 1 0
chr21:44425444|44425622 hsa-miR-663a 1 1 0
chr21:44425444|44425622 hsa-miR-940 1 1 0
chr21:44425444|44425622 hsa-miR-4326 0 1 0
chr21:44425444|44425622 hsa-miR-4268 0 1 0
chr21:44425444|44425622 hsa-miR-4270 1 0 0
chr21:44425444|44425622 hsa-miR-3621 1 0 0
chr21:44425444|44425622 hsa-miR-3918 0 1 0
chr21:44425444|44425622 hsa-miR-4441 0 1 0
chr21:44425444|44425622 hsa-miR-4518 0 1 0
chr21:44425444|44425622 hsa-miR-4692 0 1 0
chr21:44425444|44425622 hsa-miR-4706 1 0 0
chr21:44425444|44425622 hsa-miR-4739 1 1 0
chr21:44425444|44425622 hsa-miR-5193 0 1 0
chr21:44425444|44425622 hsa-miR-6132 0 1 0
chr21:44425444|44425622 hsa-miR-6860 1 0 0
chr21:44425444|44425622 hsa-miR-211-3p 1 0 0
chr21:44425444|44425622 hsa-miR-6881-3p 0 1 0
chr21:44425444|44425622 hsa-miR-3622a-5p 1 1 0
chr21:44425444|44425622 hsa-miR-7154-3p 1 1 0
chr21:44425444|44425622 hsa-miR-3187-3p 0 1 0
chr21:44425444|44425622 hsa-miR-6721-5p 0 1 0
chr21:44425444|44425622 hsa-miR-6798-5p 1 0 0
chr21:44425444|44425622 hsa-miR-3934-3p 0 1 0
chr21:44425444|44425622 hsa-miR-4707-3p 1 1 0
chr21:44425444|44425622 hsa-miR-2277-3p 1 0 0
chr21:44425444|44425622 hsa-miR-1229-5p 1 1 0
chr21:44425444|44425622 hsa-miR-4691-3p 0 1 0
chr21:44425444|44425622 hsa-miR-6771-5p 1 0 0
chr21:44425444|44425622 hsa-miR-6780a-3p 0 1 0
chr21:44425444|44425622 hsa-miR-149-3p 1 0 0
chr21:44425444|44425622 hsa-miR-1306-5p 0 1 0
chr21:44425444|44425622 hsa-miR-7112-5p 1 0 0
chr21:44425444|44425622 hsa-miR-1225-5p 1 0 0
chr21:44425444|44425622 hsa-miR-5000-5p 0 1 0
chr21:44425444|44425622 hsa-miR-3158-3p 0 1 0
chr21:44425444|44425622 hsa-miR-6804-3p 0 1 0
chr21:44425444|44425622 hsa-miR-34a-5p 0 1 0
chr21:44425444|44425622 hsa-miR-7113-5p 0 1 0
chr21:44425444|44425622 hsa-miR-541-5p 0 1 0
chr21:44425444|44425622 hsa-miR-3670 0 1 0
chr21:44425444|44425622 hsa-miR-29a-3p 0 1 0
chr21:44425444|44425622 hsa-miR-4763-3p 1 0 0
chr21:44425444|44425622 hsa-miR-6726-5p 0 1 0
chr21:44425444|44425622 hsa-miR-6754-5p 1 1 0
chr21:44425444|44425622 hsa-miR-6879-5p 1 0 0
chr21:44425444|44425622 hsa-miR-1915-3p 1 1 0
chr21:44425444|44425622 hsa-miR-3620-5p 1 0 0
chr21:44425444|44425622 hsa-miR-4728-5p 1 0 0
chr21:44425444|44425622 hsa-miR-6836-5p 1 1 0
chr21:44425444|44425622 hsa-miR-10396b-5p 1 0 0
chr21:44425444|44425622 hsa-miR-328-5p 1 0 0
chr21:44425444|44425622 hsa-miR-449c-5p 0 1 0
chr21:44425444|44425622 hsa-miR-4632-5p 1 0 0
chr21:44425444|44425622 hsa-miR-4745-5p 1 0 0
chr21:44425444|44425622 hsa-miR-6777-5p 1 0 0
chr21:44425444|44425622 hsa-miR-6795-5p 0 1 0
chr21:44425444|44425622 hsa-miR-6887-5p 1 0 0
chr21:44425444|44425622 hsa-miR-1199-5p 1 0 0
chr21:44425444|44425622 hsa-miR-5591-5p 0 1 0
chr21:44425444|44425622 hsa-miR-6792-3p 1 1 0
chr21:44425444|44425622 hsa-miR-10400-3p 1 0 0
chr21:44425444|44425622 hsa-miR-3059-5p 0 1 0
chr21:44425444|44425622 hsa-miR-4756-5p 1 1 0
chr21:44425444|44425622 hsa-miR-4691-5p 0 1 0
chr21:44425444|44425622 hsa-miR-21-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr21:44425444|44425622
ORF Type ORF1
Protein Length 51
Nucleotide Length 153
Protein Sequence MPELPWLSSLGALPTSELVFDLHGHLGSGRWRSPDVLAEGPQRKSLSCGRA
Nucleotide Sequence CTGCCTGAGCTCCCGTGGCTGTCCTCCCTGGGGGCCCTGCCCACTTCAGAGCTGGTGTTCGACCTGCATGGCCATTTGGGCTCGGGGAGGTGGAGGAGCCCAGATGTTTTGGCGGAAGGACCACAGAGGAAGTCCTTGTCCTGCGGGCGGGCA
CircID chr21:44425444|44425622
ORF Type ORF2
Protein Length 50
Nucleotide Length 150
Protein Sequence MSSRGCPPWGPCPLQSWCSTCMAIWARGGGGAQMFWRKDHRGSPCPAGGH
Nucleotide Sequence CTGAGCTCCCGTGGCTGTCCTCCCTGGGGGCCCTGCCCACTTCAGAGCTGGTGTTCGACCTGCATGGCCATTTGGGCTCGGGGAGGTGGAGGAGCCCAGATGTTTTGGCGGAAGGACCACAGAGGAAGTCCTTGTCCTGCGGGCGGGCAC
CircID chr21:44425444|44425622
ORF Type ORF3
Protein Length 42
Nucleotide Length 126
Protein Sequence MGSSTSPSPNGHAGRTPALKWAGPPGRTATGAQAASPPAPAS
Nucleotide Sequence CTGGGCTCCTCCACCTCCCCGAGCCCAAATGGCCATGCAGGTCGAACACCAGCTCTGAAGTGGGCAGGGCCCCCAGGGAGGACAGCCACGGGAGCTCAGGCAGCGTCCCCGCCGGCACCTGCCTCT
CircID chr21:44425444|44425622
ORF Type ORF4
Protein Length 26
Nucleotide Length 81
Protein Sequence MWSFRQNIWAPPPPRAQMAMQVEHQL
Nucleotide Sequence CTGTGGTCCTTCCGCCAAAACATCTGGGCTCCTCCACCTCCCCGAGCCCAAATGGCCATGCAGGTCGAACACCAGCTCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab