CircRNA Information

General Information
circRNA Basic Information
CircID chr21:44850553|44850792
Strand +
CircType exon
Host Gene ENSG00000183255.10;
Algorism CIRI2;
Sequence CAGTTGACTGCTCGTGTGCCAGCGGTGTGGGGAGGACGGGGCAGGACGCTGCAGCTCTCTCCAGCCCTGTTGGCATCCTCAGTGCCTGCAGGCCTCTCGCTGCCTGTTGGGCTGTCTGGGGGGTGGCCATTTAGGGATCGTGGGGACGGGGTCCACCCCAAGAAGAAAGAAAGGCCCGTCCACAGGCCCGGCTCTGGGCCACGTGCCCCGGAAGCAGGTGTGTCCAGAGTCAGCTGAGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr21:44850553|44850792 hsa-miR-184 0 0 1
chr21:44850553|44850792 hsa-miR-185-5p 0 0 1
chr21:44850553|44850792 hsa-miR-185-3p 0 0 1
chr21:44850553|44850792 hsa-miR-345-5p 0 0 1
chr21:44850553|44850792 hsa-miR-345-3p 0 0 1
chr21:44850553|44850792 hsa-miR-422a 0 0 1
chr21:44850553|44850792 hsa-miR-522-5p 0 0 1
chr21:44850553|44850792 hsa-miR-522-3p 0 0 1
chr21:44850553|44850792 hsa-miR-558 0 0 1
chr21:44850553|44850792 hsa-miR-588 0 0 1
chr21:44850553|44850792 hsa-miR-608 0 0 1
chr21:44850553|44850792 hsa-miR-635 0 0 1
chr21:44850553|44850792 hsa-miR-1228-5p 0 0 1
chr21:44850553|44850792 hsa-miR-1228-3p 0 0 1
chr21:44850553|44850792 hsa-miR-663b 0 0 1
chr21:44850553|44850792 hsa-miR-1204 0 0 1
chr21:44850553|44850792 hsa-miR-1205 0 0 1
chr21:44850553|44850792 hsa-miR-1247-5p 0 0 1
chr21:44850553|44850792 hsa-miR-1247-3p 0 0 1
chr21:44850553|44850792 hsa-miR-1324 0 0 1
chr21:44850553|44850792 hsa-miR-885-3p 0 0 1
chr21:44850553|44850792 hsa-miR-1184 0 0 1
chr21:44850553|44850792 hsa-miR-361-3p 0 0 1
chr21:44850553|44850792 hsa-miR-1207-3p 0 0 1
chr21:44850553|44850792 hsa-miR-324-3p 0 0 1
chr21:44850553|44850792 hsa-miR-342-5p 0 0 1
chr21:44850553|44850792 hsa-miR-516a-3p 0 0 1
chr21:44850553|44850792 hsa-miR-362-3p 0 0 1
chr21:44850553|44850792 hsa-miR-378 0 0 1
chr21:44850553|44850792 hsa-miR-329 0 0 1
chr21:44850553|44850792 hsa-miR-220a 0 0 1
chr21:44850553|44850792 hsa-miR-1185 0 0 1
chr21:44850553|44850792 hsa-miR-3937 1 0 0
chr21:44850553|44850792 hsa-miR-4688 1 0 0
chr21:44850553|44850792 hsa-miR-3692-5p 1 0 0
chr21:44850553|44850792 hsa-miR-339-5p 1 0 0
chr21:44850553|44850792 hsa-miR-6752-3p 1 0 0
chr21:44850553|44850792 hsa-miR-6760-3p 1 0 0
chr21:44850553|44850792 hsa-miR-6732-3p 1 0 0
chr21:44850553|44850792 hsa-miR-4632-5p 1 0 0
chr21:44850553|44850792 hsa-miR-6724-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr21:44850553|44850792
ORF Type ORF1
Protein Length 77
Nucleotide Length 234
Protein Sequence MTARVPAVWGGRGRTLQLSPALLASSVPAGLSLPVGLSGGWPFRDRGDGVHPKKKERPVHRPGSGPRAPEAGVSRVS
Nucleotide Sequence TTGACTGCTCGTGTGCCAGCGGTGTGGGGAGGACGGGGCAGGACGCTGCAGCTCTCTCCAGCCCTGTTGGCATCCTCAGTGCCTGCAGGCCTCTCGCTGCCTGTTGGGCTGTCTGGGGGGTGGCCATTTAGGGATCGTGGGGACGGGGTCCACCCCAAGAAGAAAGAAAGGCCCGTCCACAGGCCCGGCTCTGGGCCACGTGCCCCGGAAGCAGGTGTGTCCAGAGTCAGCTGA
CircID chr21:44850553|44850792
ORF Type ORF2
Protein Length 77
Nucleotide Length 231
Protein Sequence MLVCQRCGEDGAGRCSSLQPCWHPQCLQASRCLLGCLGGGHLGIVGTGSTPRRKKGPSTGPALGHVPRKQVCPESAE
Nucleotide Sequence CTGCTCGTGTGCCAGCGGTGTGGGGAGGACGGGGCAGGACGCTGCAGCTCTCTCCAGCCCTGTTGGCATCCTCAGTGCCTGCAGGCCTCTCGCTGCCTGTTGGGCTGTCTGGGGGGTGGCCATTTAGGGATCGTGGGGACGGGGTCCACCCCAAGAAGAAAGAAAGGCCCGTCCACAGGCCCGGCTCTGGGCCACGTGCCCCGGAAGCAGGTGTGTCCAGAGTCAGCTGAG
CircID chr21:44850553|44850792
ORF Type ORF3
Protein Length 77
Nucleotide Length 231
Protein Sequence MTLDTPASGARGPEPGLWTGLSFFLGWTPSPRSLNGHPPDSPTGSERPAGTEDANRAGESCSVLPRPPHTAGTRAVN
Nucleotide Sequence CTGACTCTGGACACACCTGCTTCCGGGGCACGTGGCCCAGAGCCGGGCCTGTGGACGGGCCTTTCTTTCTTCTTGGGGTGGACCCCGTCCCCACGATCCCTAAATGGCCACCCCCCAGACAGCCCAACAGGCAGCGAGAGGCCTGCAGGCACTGAGGATGCCAACAGGGCTGGAGAGAGCTGCAGCGTCCTGCCCCGTCCTCCCCACACCGCTGGCACACGAGCAGTCAAC
CircID chr21:44850553|44850792
ORF Type ORF4
Protein Length 28
Nucleotide Length 87
Protein Sequence MLPGHVAQSRACGRAFLSSWGGPRPHDP
Nucleotide Sequence CTGCTTCCGGGGCACGTGGCCCAGAGCCGGGCCTGTGGACGGGCCTTTCTTTCTTCTTGGGGTGGACCCCGTCCCCACGATCCCTAA
CircID chr21:44850553|44850792
ORF Type ORF5
Protein Length 43
Nucleotide Length 129
Protein Sequence MATPQTAQQAARGLQALRMPTGLERAAASCPVLPTPLAHEQST
Nucleotide Sequence ATGGCCACCCCCCAGACAGCCCAACAGGCAGCGAGAGGCCTGCAGGCACTGAGGATGCCAACAGGGCTGGAGAGAGCTGCAGCGTCCTGCCCCGTCCTCCCCACACCGCTGGCACACGAGCAGTCAACT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab