CircRNA Information

General Information
circRNA Basic Information
CircID chr21:44865943|44866094
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CCCTTCCTTAGTAGCAGCGCTTTGAGTAGTGGGCAGAGTCTCAGGGTGTTCTGTGTGGTTGGAGCAGGCTGGTGTGCCGGGCCTCTCCCTTGGTACAGGTTGGTACAGGGAGCATAGCCCAGTCTGGAGTGAGGCTACCAGGGGACTAAGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr21:44865943|44866094 hsa-miR-518f-5p 0 0 1
chr21:44865943|44866094 hsa-miR-518f-3p 0 0 1
chr21:44865943|44866094 hsa-miR-518b 0 1 1
chr21:44865943|44866094 hsa-miR-518c-5p 0 0 1
chr21:44865943|44866094 hsa-miR-518c-3p 0 0 1
chr21:44865943|44866094 hsa-miR-518e-5p 0 0 1
chr21:44865943|44866094 hsa-miR-518e-3p 0 0 1
chr21:44865943|44866094 hsa-miR-596 0 1 1
chr21:44865943|44866094 hsa-miR-649 0 0 1
chr21:44865943|44866094 hsa-miR-888-5p 0 0 1
chr21:44865943|44866094 hsa-miR-888-3p 0 0 1
chr21:44865943|44866094 hsa-miR-1226-5p 0 0 1
chr21:44865943|44866094 hsa-miR-1226-3p 0 0 1
chr21:44865943|44866094 hsa-miR-486-5p 0 1 1
chr21:44865943|44866094 hsa-miR-339-5p 0 0 1
chr21:44865943|44866094 hsa-miR-330-3p 0 0 1
chr21:44865943|44866094 hsa-miR-508-5p 0 1 1
chr21:44865943|44866094 hsa-miR-331-3p 1 1 1
chr21:44865943|44866094 hsa-miR-324-3p 1 1 1
chr21:44865943|44866094 hsa-miR-125a-5p 0 1 1
chr21:44865943|44866094 hsa-miR-483-3p 0 0 1
chr21:44865943|44866094 hsa-miR-518a-3p 0 0 1
chr21:44865943|44866094 hsa-miR-518d-3p 0 1 1
chr21:44865943|44866094 hsa-miR-1274a 0 0 1
chr21:44865943|44866094 hsa-miR-125b 0 0 1
chr21:44865943|44866094 hsa-miR-1274b 0 0 1
chr21:44865943|44866094 hsa-miR-1538 1 1 0
chr21:44865943|44866094 hsa-miR-1913 1 0 0
chr21:44865943|44866094 hsa-miR-4301 0 1 0
chr21:44865943|44866094 hsa-miR-4324 0 1 0
chr21:44865943|44866094 hsa-miR-4329 0 1 0
chr21:44865943|44866094 hsa-miR-4463 0 1 0
chr21:44865943|44866094 hsa-miR-4494 0 1 0
chr21:44865943|44866094 hsa-miR-4522 0 1 0
chr21:44865943|44866094 hsa-miR-4682 1 0 0
chr21:44865943|44866094 hsa-miR-4741 1 0 0
chr21:44865943|44866094 hsa-miR-7976 0 1 0
chr21:44865943|44866094 hsa-miR-4747-3p 0 1 0
chr21:44865943|44866094 hsa-miR-766-3p 0 1 0
chr21:44865943|44866094 hsa-miR-6849-3p 1 1 0
chr21:44865943|44866094 hsa-miR-5008-5p 0 1 0
chr21:44865943|44866094 hsa-miR-6772-3p 1 0 0
chr21:44865943|44866094 hsa-miR-7113-3p 0 1 0
chr21:44865943|44866094 hsa-miR-7106-3p 1 1 0
chr21:44865943|44866094 hsa-miR-6871-3p 1 1 0
chr21:44865943|44866094 hsa-miR-133a-3p 1 0 0
chr21:44865943|44866094 hsa-miR-4745-3p 0 1 0
chr21:44865943|44866094 hsa-miR-3184-5p 0 1 0
chr21:44865943|44866094 hsa-miR-6791-5p 1 0 0
chr21:44865943|44866094 hsa-miR-6511b-3p 1 0 0
chr21:44865943|44866094 hsa-miR-6864-3p 0 1 0
chr21:44865943|44866094 hsa-miR-125b-5p 0 1 0
chr21:44865943|44866094 hsa-miR-3145-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr21:44865943|44866094
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence MSSGQSLRVFCVVGAGWCAGPLPWYRLVQGA
Nucleotide Sequence TTGAGTAGTGGGCAGAGTCTCAGGGTGTTCTGTGTGGTTGGAGCAGGCTGGTGTGCCGGGCCTCTCCCTTGGTACAGGTTGGTACAGGGAGCATAG
CircID chr21:44865943|44866094
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MEQAGVPGLSLGTGWYREHSPVWSEATRGLR
Nucleotide Sequence TTGGAGCAGGCTGGTGTGCCGGGCCTCTCCCTTGGTACAGGTTGGTACAGGGAGCATAGCCCAGTCTGGAGTGAGGCTACCAGGGGACTAAGA
CircID chr21:44865943|44866094
ORF Type ORF3
Protein Length 32
Nucleotide Length 99
Protein Sequence MCGWSRLVCRASPLVQVGTGSIAQSGVRLPGD
Nucleotide Sequence CTGTGTGGTTGGAGCAGGCTGGTGTGCCGGGCCTCTCCCTTGGTACAGGTTGGTACAGGGAGCATAGCCCAGTCTGGAGTGAGGCTACCAGGGGACTAA
CircID chr21:44865943|44866094
ORF Type ORF4
Protein Length 40
Nucleotide Length 120
Protein Sequence MGYAPCTNLYQGRGPAHQPAPTTQNTLRLCPLLKALLLRK
Nucleotide Sequence CTGGGCTATGCTCCCTGTACCAACCTGTACCAAGGGAGAGGCCCGGCACACCAGCCTGCTCCAACCACACAGAACACCCTGAGACTCTGCCCACTACTCAAAGCGCTGCTACTAAGGAAG
CircID chr21:44865943|44866094
ORF Type ORF5
Protein Length 47
Nucleotide Length 141
Protein Sequence MVASLQTGLCSLYQPVPRERPGTPACSNHTEHPETLPTTQSAATKEG
Nucleotide Sequence CTGGTAGCCTCACTCCAGACTGGGCTATGCTCCCTGTACCAACCTGTACCAAGGGAGAGGCCCGGCACACCAGCCTGCTCCAACCACACAGAACACCCTGAGACTCTGCCCACTACTCAAAGCGCTGCTACTAAGGAAGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab