CircRNA Information

General Information
circRNA Basic Information
CircID chr21:45264415|45264606
Strand -
CircType exon
Host Gene ENSG00000186866.15;
Algorism CIRI2;
Sequence CTTCCACGGATTCTGTGTCTAGCGTTGCCCTCTTTGCAGATGCCCCTCGTGGTGGTGGCACAAAGACCTAAAAATGATTTCTGTAAAATGGGTACAAGGAGCTCCCTGATAAAGCAGCTCATCCTAGACAGCCTTTTGGAGTTAGCGTAACTGTCCTTCCTCATTTCTAGTTCTCAATAGCGAATGGCAGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr21:45264415|45264606 hsa-miR-146a-5p 0 0 1
chr21:45264415|45264606 hsa-miR-146a-3p 0 0 1
chr21:45264415|45264606 hsa-miR-346 0 0 1
chr21:45264415|45264606 hsa-miR-527 0 1 1
chr21:45264415|45264606 hsa-miR-558 0 0 1
chr21:45264415|45264606 hsa-miR-580-5p 0 0 1
chr21:45264415|45264606 hsa-miR-580-3p 0 0 1
chr21:45264415|45264606 hsa-miR-583 0 0 1
chr21:45264415|45264606 hsa-miR-589-5p 0 0 1
chr21:45264415|45264606 hsa-miR-589-3p 0 0 1
chr21:45264415|45264606 hsa-miR-626 0 0 1
chr21:45264415|45264606 hsa-miR-660-5p 0 0 1
chr21:45264415|45264606 hsa-miR-660-3p 0 0 1
chr21:45264415|45264606 hsa-miR-920 0 0 1
chr21:45264415|45264606 hsa-miR-935 0 1 1
chr21:45264415|45264606 hsa-miR-1227-5p 0 0 1
chr21:45264415|45264606 hsa-miR-1227-3p 0 0 1
chr21:45264415|45264606 hsa-miR-1255a 0 0 1
chr21:45264415|45264606 hsa-miR-1265 0 0 1
chr21:45264415|45264606 hsa-miR-361-5p 0 0 1
chr21:45264415|45264606 hsa-miR-423-5p 0 0 1
chr21:45264415|45264606 hsa-miR-556-5p 0 1 1
chr21:45264415|45264606 hsa-miR-146b-5p 1 0 1
chr21:45264415|45264606 hsa-miR-518a-5p 0 1 1
chr21:45264415|45264606 hsa-miR-220b 0 0 1
chr21:45264415|45264606 hsa-miR-1255b 0 0 1
chr21:45264415|45264606 hsa-miR-1300 0 0 1
chr21:45264415|45264606 hsa-miR-3131 1 0 0
chr21:45264415|45264606 hsa-miR-4533 0 1 0
chr21:45264415|45264606 hsa-miR-4688 0 1 0
chr21:45264415|45264606 hsa-miR-4741 1 0 0
chr21:45264415|45264606 hsa-miR-5093 1 1 0
chr21:45264415|45264606 hsa-miR-7974 1 0 0
chr21:45264415|45264606 hsa-miR-8059 0 1 0
chr21:45264415|45264606 hsa-miR-8080 0 1 0
chr21:45264415|45264606 hsa-miR-6765-5p 1 0 0
chr21:45264415|45264606 hsa-miR-4687-3p 1 0 0
chr21:45264415|45264606 hsa-miR-6829-5p 1 0 0
chr21:45264415|45264606 hsa-miR-3616-3p 0 1 0
chr21:45264415|45264606 hsa-miR-3158-5p 0 1 0
chr21:45264415|45264606 hsa-miR-508-5p 0 1 0
chr21:45264415|45264606 hsa-miR-519d-5p 0 1 0
chr21:45264415|45264606 hsa-miR-6778-5p 1 0 0
chr21:45264415|45264606 hsa-miR-1249-5p 1 0 0
chr21:45264415|45264606 hsa-miR-6797-5p 1 0 0
chr21:45264415|45264606 hsa-miR-6735-5p 1 1 0
chr21:45264415|45264606 hsa-miR-6858-5p 1 0 0
chr21:45264415|45264606 hsa-miR-3184-5p 0 1 0
chr21:45264415|45264606 hsa-miR-323b-5p 1 1 0
chr21:45264415|45264606 hsa-miR-410-5p 1 1 0
chr21:45264415|45264606 hsa-miR-7153-5p 0 1 0
chr21:45264415|45264606 hsa-miR-452-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr21:45264415|45264606
ORF Type ORF1
Protein Length 45
Nucleotide Length 138
Protein Sequence MCLALPSLQMPLVVVAQRPKNDFCKMGTRSSLIKQLILDSLLELA
Nucleotide Sequence CTGTGTCTAGCGTTGCCCTCTTTGCAGATGCCCCTCGTGGTGGTGGCACAAAGACCTAAAAATGATTTCTGTAAAATGGGTACAAGGAGCTCCCTGATAAAGCAGCTCATCCTAGACAGCCTTTTGGAGTTAGCGTAA
CircID chr21:45264415|45264606
ORF Type ORF2
Protein Length 32
Nucleotide Length 99
Protein Sequence MLYQGAPCTHFTEIIFRSLCHHHEGHLQRGQR
Nucleotide Sequence CTGCTTTATCAGGGAGCTCCTTGTACCCATTTTACAGAAATCATTTTTAGGTCTTTGTGCCACCACCACGAGGGGCATCTGCAAAGAGGGCAACGCTAG
CircID chr21:45264415|45264606
ORF Type ORF3
Protein Length 54
Nucleotide Length 162
Protein Sequence MRKDSYANSKRLSRMSCFIRELLVPILQKSFLGLCATTTRGICKEGNARHRIRG
Nucleotide Sequence ATGAGGAAGGACAGTTACGCTAACTCCAAAAGGCTGTCTAGGATGAGCTGCTTTATCAGGGAGCTCCTTGTACCCATTTTACAGAAATCATTTTTAGGTCTTTGTGCCACCACCACGAGGGGCATCTGCAAAGAGGGCAACGCTAGACACAGAATCCGTGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab