CircRNA Information

General Information
circRNA Basic Information
CircID chr21:46001967|46002274
Strand +
CircType exon
Host Gene ENSG00000142156.13;
Algorism CIRI2;
Sequence TGCAGGGCCTCCCCCGTGAAGGTGCCGCCCGCCATCCACTGCAGGCTCTTGATGGCTCTGCATAGCAAAGGGCAGGAAGGGCCGGTTGGGGCCAGGCCTGCCGCGGGGCCGAGCCCACCTGGGATCAGGGGTCAGGGCCGACCTGCCGTGGGAACAGCGGTCGGGGCGAGGGGTGGGAGGGTCCTGGCCGCGTGGGGCACTCACTCCTTGAGCTCCTGCACGTTCCGGATGCTGGGGCTGCGCAGGCTCACGTGCTCCTGCATCTGGCTGTGGCTGTACTGCACCACACCCGCGTACGACTGCCCTGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr21:46001967|46002274 hsa-miR-335-5p 0 0 1
chr21:46001967|46002274 hsa-miR-335-3p 0 0 1
chr21:46001967|46002274 hsa-miR-596 0 1 1
chr21:46001967|46002274 hsa-miR-662 0 0 1
chr21:46001967|46002274 hsa-miR-541-5p 0 0 1
chr21:46001967|46002274 hsa-miR-541-3p 0 0 1
chr21:46001967|46002274 hsa-miR-708-5p 0 0 1
chr21:46001967|46002274 hsa-miR-708-3p 0 0 1
chr21:46001967|46002274 hsa-miR-938 0 0 1
chr21:46001967|46002274 hsa-miR-1286 0 0 1
chr21:46001967|46002274 hsa-miR-1291 0 1 1
chr21:46001967|46002274 hsa-miR-532-3p 0 1 1
chr21:46001967|46002274 hsa-miR-654-5p 0 0 1
chr21:46001967|46002274 hsa-miR-1224-3p 0 0 1
chr21:46001967|46002274 hsa-miR-28-5p 0 1 1
chr21:46001967|46002274 hsa-miR-188-3p 0 0 1
chr21:46001967|46002274 hsa-miR-338-3p 0 1 1
chr21:46001967|46002274 hsa-miR-1260 0 0 1
chr21:46001967|46002274 hsa-miR-1280 0 0 1
chr21:46001967|46002274 hsa-miR-886-3p 0 0 1
chr21:46001967|46002274 hsa-miR-663 0 0 1
chr21:46001967|46002274 hsa-miR-663a 1 0 0
chr21:46001967|46002274 hsa-miR-1260a 0 1 0
chr21:46001967|46002274 hsa-miR-1539 0 1 0
chr21:46001967|46002274 hsa-miR-2861 1 0 0
chr21:46001967|46002274 hsa-miR-3139 0 1 0
chr21:46001967|46002274 hsa-miR-3141 1 0 0
chr21:46001967|46002274 hsa-miR-1260b 0 1 0
chr21:46001967|46002274 hsa-miR-3135b 1 0 0
chr21:46001967|46002274 hsa-miR-4479 1 0 0
chr21:46001967|46002274 hsa-miR-4674 0 1 0
chr21:46001967|46002274 hsa-miR-4767 1 0 0
chr21:46001967|46002274 hsa-miR-5090 1 0 0
chr21:46001967|46002274 hsa-miR-6069 1 1 0
chr21:46001967|46002274 hsa-miR-6081 1 0 0
chr21:46001967|46002274 hsa-miR-6860 1 0 0
chr21:46001967|46002274 hsa-miR-12115 1 0 0
chr21:46001967|46002274 hsa-miR-143-5p 0 1 0
chr21:46001967|46002274 hsa-miR-17-3p 0 1 0
chr21:46001967|46002274 hsa-miR-511-5p 0 1 0
chr21:46001967|46002274 hsa-miR-6749-3p 0 1 0
chr21:46001967|46002274 hsa-miR-4726-3p 0 1 0
chr21:46001967|46002274 hsa-miR-6822-3p 0 1 0
chr21:46001967|46002274 hsa-miR-6892-3p 0 1 0
chr21:46001967|46002274 hsa-miR-7847-3p 1 0 0
chr21:46001967|46002274 hsa-miR-4722-5p 0 1 0
chr21:46001967|46002274 hsa-miR-6820-5p 0 1 0
chr21:46001967|46002274 hsa-miR-874-5p 1 1 0
chr21:46001967|46002274 hsa-miR-1915-5p 1 0 0
chr21:46001967|46002274 hsa-miR-6732-5p 1 0 0
chr21:46001967|46002274 hsa-miR-6827-5p 1 0 0
chr21:46001967|46002274 hsa-miR-2467-3p 1 0 0
chr21:46001967|46002274 hsa-miR-1247-5p 1 0 0
chr21:46001967|46002274 hsa-miR-1908-3p 1 0 0
chr21:46001967|46002274 hsa-miR-6803-3p 0 1 0
chr21:46001967|46002274 hsa-miR-4691-3p 0 1 0
chr21:46001967|46002274 hsa-miR-3667-3p 0 1 0
chr21:46001967|46002274 hsa-miR-3677-3p 1 0 0
chr21:46001967|46002274 hsa-miR-6749-5p 1 0 0
chr21:46001967|46002274 hsa-miR-378a-5p 0 1 0
chr21:46001967|46002274 hsa-miR-345-5p 1 1 0
chr21:46001967|46002274 hsa-miR-6785-3p 1 0 0
chr21:46001967|46002274 hsa-miR-4732-3p 0 1 0
chr21:46001967|46002274 hsa-miR-3619-3p 1 0 0
chr21:46001967|46002274 hsa-miR-4758-3p 1 1 0
chr21:46001967|46002274 hsa-miR-6793-3p 0 1 0
chr21:46001967|46002274 hsa-miR-6886-3p 0 1 0
chr21:46001967|46002274 hsa-miR-328-3p 1 1 0
chr21:46001967|46002274 hsa-miR-6770-3p 1 0 0
chr21:46001967|46002274 hsa-miR-6795-3p 0 1 0
chr21:46001967|46002274 hsa-miR-6501-3p 1 0 0
chr21:46001967|46002274 hsa-miR-3151-3p 0 1 0
chr21:46001967|46002274 hsa-miR-6851-3p 0 1 0
chr21:46001967|46002274 hsa-miR-4433a-5p 1 1 0
chr21:46001967|46002274 hsa-miR-18b-3p 0 1 0
chr21:46001967|46002274 hsa-miR-10400-5p 1 0 0
chr21:46001967|46002274 hsa-miR-1233-5p 1 0 0
chr21:46001967|46002274 hsa-miR-4763-3p 1 0 0
chr21:46001967|46002274 hsa-miR-6816-5p 1 0 0
chr21:46001967|46002274 hsa-miR-6743-5p 1 0 0
chr21:46001967|46002274 hsa-miR-6752-5p 1 0 0
chr21:46001967|46002274 hsa-miR-6722-3p 1 0 0
chr21:46001967|46002274 hsa-miR-6879-5p 0 1 0
chr21:46001967|46002274 hsa-miR-6836-5p 1 0 0
chr21:46001967|46002274 hsa-miR-1909-3p 1 0 0
chr21:46001967|46002274 hsa-miR-4632-5p 1 1 0
chr21:46001967|46002274 hsa-miR-4685-5p 0 1 0
chr21:46001967|46002274 hsa-miR-10396a-3p 1 0 0
chr21:46001967|46002274 hsa-miR-10396b-3p 1 0 0
chr21:46001967|46002274 hsa-miR-6849-5p 0 1 0
chr21:46001967|46002274 hsa-miR-6724-5p 1 1 0
chr21:46001967|46002274 hsa-miR-10401-3p 1 1 0
chr21:46001967|46002274 hsa-miR-6775-3p 1 1 0
chr21:46001967|46002274 hsa-miR-10392-3p 1 1 0
chr21:46001967|46002274 hsa-miR-1234-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr21:46001967|46002274
ORF Type ORF1
Protein Length 86
Nucleotide Length 258
Protein Sequence MMALHSKGQEGPVGARPAAGPSPPGIRGQGRPAVGTAVGARGGRVLAAWGTHSLSSCTFRMLGLRRLTCSCIWLWLYCTTPAYDCP
Nucleotide Sequence TTGATGGCTCTGCATAGCAAAGGGCAGGAAGGGCCGGTTGGGGCCAGGCCTGCCGCGGGGCCGAGCCCACCTGGGATCAGGGGTCAGGGCCGACCTGCCGTGGGAACAGCGGTCGGGGCGAGGGGTGGGAGGGTCCTGGCCGCGTGGGGCACTCACTCCTTGAGCTCCTGCACGTTCCGGATGCTGGGGCTGCGCAGGCTCACGTGCTCCTGCATCTGGCTGTGGCTGTACTGCACCACACCCGCGTACGACTGCCCT
CircID chr21:46001967|46002274
ORF Type ORF2
Protein Length 41
Nucleotide Length 126
Protein Sequence MGPGLPRGRAHLGSGVRADLPWEQRSGRGVGGSWPRGALTP
Nucleotide Sequence TTGGGGCCAGGCCTGCCGCGGGGCCGAGCCCACCTGGGATCAGGGGTCAGGGCCGACCTGCCGTGGGAACAGCGGTCGGGGCGAGGGGTGGGAGGGTCCTGGCCGCGTGGGGCACTCACTCCTTGA
CircID chr21:46001967|46002274
ORF Type ORF3
Protein Length 31
Nucleotide Length 93
Protein Sequence MHVPDAGAAQAHVLLHLAVAVLHHTRVRLPW
Nucleotide Sequence CTGCACGTTCCGGATGCTGGGGCTGCGCAGGCTCACGTGCTCCTGCATCTGGCTGTGGCTGTACTGCACCACACCCGCGTACGACTGCCCTGG
CircID chr21:46001967|46002274
ORF Type ORF4
Protein Length 42
Nucleotide Length 126
Protein Sequence MIPGGLGPAAGLAPTGPSCPLLCRAIKSLQWMAGGTFTGEAL
Nucleotide Sequence CTGATCCCAGGTGGGCTCGGCCCCGCGGCAGGCCTGGCCCCAACCGGCCCTTCCTGCCCTTTGCTATGCAGAGCCATCAAGAGCCTGCAGTGGATGGCGGGCGGCACCTTCACGGGGGAGGCCCTG
CircID chr21:46001967|46002274
ORF Type ORF5
Protein Length 45
Nucleotide Length 135
Protein Sequence MTPDPRWARPRGRPGPNRPFLPFAMQSHQEPAVDGGRHLHGGGPA
Nucleotide Sequence CTGACCCCTGATCCCAGGTGGGCTCGGCCCCGCGGCAGGCCTGGCCCCAACCGGCCCTTCCTGCCCTTTGCTATGCAGAGCCATCAAGAGCCTGCAGTGGATGGCGGGCGGCACCTTCACGGGGGAGGCCCTGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab