CircRNA Information

General Information
circRNA Basic Information
CircID chr21:46004519|46004862
Strand -
CircType exon
Host Gene ENSG00000142156.13;
Algorism CIRI2;
Sequence CAATCCTCACCTAACAGTTACTTTACAATTAAACTCAAAGCAAGCTCTTCTCCTCAGCTTGGGGCAGCCATTGGCCTCTGTCTCGTTTTGGGAAACCAAGGTCAGGAGGCCGTTGCAGACATAAATCTCGGCGACTCGGCCCCGTCTCCTGAGGGTCCTGCTGGTGACCGGCCTGGACCTTGGCCCTACAGCCCTGGAGGCCGCTGCTGACCAGCACTGACCCCGACCTCAGAGAGTACTCGCAGGGGCGCTGGCTGCACTCAAGACCCTCGAGATTAACGGTGCTAACCCCGTCTGCTCCTCCCTCCCGCAGAGACTGGGGCCTGGACTGGACATGAGAGCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr21:46004519|46004862 hsa-miR-29a-5p 0 0 1
chr21:46004519|46004862 hsa-miR-29a-3p 0 0 1
chr21:46004519|46004862 hsa-miR-198 0 0 1
chr21:46004519|46004862 hsa-miR-148a-5p 0 0 1
chr21:46004519|46004862 hsa-miR-148a-3p 0 0 1
chr21:46004519|46004862 hsa-miR-214-5p 0 0 1
chr21:46004519|46004862 hsa-miR-214-3p 0 0 1
chr21:46004519|46004862 hsa-miR-216a-5p 0 0 1
chr21:46004519|46004862 hsa-miR-216a-3p 0 0 1
chr21:46004519|46004862 hsa-miR-152-5p 0 0 1
chr21:46004519|46004862 hsa-miR-152-3p 0 0 1
chr21:46004519|46004862 hsa-miR-29c-5p 0 0 1
chr21:46004519|46004862 hsa-miR-29c-3p 0 0 1
chr21:46004519|46004862 hsa-miR-148b-5p 0 0 1
chr21:46004519|46004862 hsa-miR-148b-3p 0 0 1
chr21:46004519|46004862 hsa-miR-346 0 0 1
chr21:46004519|46004862 hsa-miR-526b-5p 0 0 1
chr21:46004519|46004862 hsa-miR-526b-3p 0 0 1
chr21:46004519|46004862 hsa-miR-503-5p 0 0 1
chr21:46004519|46004862 hsa-miR-503-3p 0 0 1
chr21:46004519|46004862 hsa-miR-559 0 0 1
chr21:46004519|46004862 hsa-miR-593-5p 0 0 1
chr21:46004519|46004862 hsa-miR-593-3p 0 0 1
chr21:46004519|46004862 hsa-miR-604 0 0 1
chr21:46004519|46004862 hsa-miR-632 0 0 1
chr21:46004519|46004862 hsa-miR-634 0 0 1
chr21:46004519|46004862 hsa-miR-647 0 0 1
chr21:46004519|46004862 hsa-miR-1296-5p 0 0 1
chr21:46004519|46004862 hsa-miR-1296-3p 0 0 1
chr21:46004519|46004862 hsa-miR-765 0 1 1
chr21:46004519|46004862 hsa-miR-891a-5p 0 0 1
chr21:46004519|46004862 hsa-miR-891a-3p 0 0 1
chr21:46004519|46004862 hsa-miR-216b-5p 0 0 1
chr21:46004519|46004862 hsa-miR-216b-3p 0 0 1
chr21:46004519|46004862 hsa-miR-922 0 0 1
chr21:46004519|46004862 hsa-miR-1182 0 1 1
chr21:46004519|46004862 hsa-miR-1226-5p 0 0 1
chr21:46004519|46004862 hsa-miR-1226-3p 0 0 1
chr21:46004519|46004862 hsa-miR-548j-5p 0 0 1
chr21:46004519|46004862 hsa-miR-548j-3p 0 0 1
chr21:46004519|46004862 hsa-miR-1286 0 1 1
chr21:46004519|46004862 hsa-miR-548k 0 0 1
chr21:46004519|46004862 hsa-miR-548l 0 0 1
chr21:46004519|46004862 hsa-miR-1253 0 0 1
chr21:46004519|46004862 hsa-miR-1258 0 0 1
chr21:46004519|46004862 hsa-miR-1321 0 0 1
chr21:46004519|46004862 hsa-miR-512-3p 0 1 1
chr21:46004519|46004862 hsa-miR-193a-5p 0 0 1
chr21:46004519|46004862 hsa-miR-483-5p 0 0 1
chr21:46004519|46004862 hsa-miR-654-3p 0 1 1
chr21:46004519|46004862 hsa-miR-516a-5p 0 0 1
chr21:46004519|46004862 hsa-miR-324-3p 0 0 1
chr21:46004519|46004862 hsa-miR-455-3p 0 0 1
chr21:46004519|46004862 hsa-miR-548b-5p 0 0 1
chr21:46004519|46004862 hsa-miR-548d-5p 0 0 1
chr21:46004519|46004862 hsa-miR-548c-5p 0 0 1
chr21:46004519|46004862 hsa-miR-548a-5p 0 0 1
chr21:46004519|46004862 hsa-miR-548i 0 0 1
chr21:46004519|46004862 hsa-miR-138 0 0 1
chr21:46004519|46004862 hsa-miR-29b 0 0 1
chr21:46004519|46004862 hsa-miR-1185 0 0 1
chr21:46004519|46004862 hsa-miR-548h 0 0 1
chr21:46004519|46004862 hsa-miR-663a 1 0 0
chr21:46004519|46004862 hsa-miR-762 1 0 0
chr21:46004519|46004862 hsa-miR-4510 0 1 0
chr21:46004519|46004862 hsa-miR-4530 0 1 0
chr21:46004519|46004862 hsa-miR-4651 1 0 0
chr21:46004519|46004862 hsa-miR-4656 1 0 0
chr21:46004519|46004862 hsa-miR-4706 1 0 0
chr21:46004519|46004862 hsa-miR-4739 1 1 0
chr21:46004519|46004862 hsa-miR-4741 1 1 0
chr21:46004519|46004862 hsa-miR-5090 1 0 0
chr21:46004519|46004862 hsa-miR-5572 1 0 0
chr21:46004519|46004862 hsa-miR-6068 1 1 0
chr21:46004519|46004862 hsa-miR-6081 1 0 0
chr21:46004519|46004862 hsa-miR-6085 1 0 0
chr21:46004519|46004862 hsa-miR-6086 1 0 0
chr21:46004519|46004862 hsa-miR-6090 1 0 0
chr21:46004519|46004862 hsa-miR-6127 0 1 0
chr21:46004519|46004862 hsa-miR-6131 0 1 0
chr21:46004519|46004862 hsa-miR-6133 0 1 0
chr21:46004519|46004862 hsa-miR-8072 1 0 0
chr21:46004519|46004862 hsa-miR-8078 1 1 0
chr21:46004519|46004862 hsa-miR-8089 1 1 0
chr21:46004519|46004862 hsa-miR-12119 1 1 0
chr21:46004519|46004862 hsa-miR-6765-5p 1 0 0
chr21:46004519|46004862 hsa-miR-7106-5p 1 1 0
chr21:46004519|46004862 hsa-miR-6728-5p 1 0 0
chr21:46004519|46004862 hsa-miR-3692-5p 1 1 0
chr21:46004519|46004862 hsa-miR-139-3p 1 1 0
chr21:46004519|46004862 hsa-miR-6089 1 0 0
chr21:46004519|46004862 hsa-miR-3192-5p 1 0 0
chr21:46004519|46004862 hsa-miR-7160-5p 1 1 0
chr21:46004519|46004862 hsa-miR-6727-5p 1 0 0
chr21:46004519|46004862 hsa-miR-3189-5p 1 0 0
chr21:46004519|46004862 hsa-miR-6748-5p 1 0 0
chr21:46004519|46004862 hsa-miR-6881-5p 1 0 0
chr21:46004519|46004862 hsa-miR-6810-5p 1 0 0
chr21:46004519|46004862 hsa-miR-6858-3p 0 1 0
chr21:46004519|46004862 hsa-miR-6784-5p 1 0 0
chr21:46004519|46004862 hsa-miR-4640-5p 0 1 0
chr21:46004519|46004862 hsa-miR-6771-5p 1 0 0
chr21:46004519|46004862 hsa-miR-889-5p 0 1 0
chr21:46004519|46004862 hsa-miR-4787-5p 1 0 0
chr21:46004519|46004862 hsa-miR-4446-3p 0 1 0
chr21:46004519|46004862 hsa-miR-149-3p 1 1 0
chr21:46004519|46004862 hsa-miR-7156-3p 0 1 0
chr21:46004519|46004862 hsa-miR-1184 0 1 0
chr21:46004519|46004862 hsa-miR-6895-5p 0 1 0
chr21:46004519|46004862 hsa-miR-135b-3p 0 1 0
chr21:46004519|46004862 hsa-miR-1250-5p 1 0 0
chr21:46004519|46004862 hsa-miR-4772-3p 0 1 0
chr21:46004519|46004862 hsa-miR-744-5p 1 0 0
chr21:46004519|46004862 hsa-miR-4524a-3p 0 1 0
chr21:46004519|46004862 hsa-miR-3664-3p 0 1 0
chr21:46004519|46004862 hsa-miR-5699-5p 0 1 0
chr21:46004519|46004862 hsa-miR-4738-5p 0 1 0
chr21:46004519|46004862 hsa-miR-1207-5p 1 0 0
chr21:46004519|46004862 hsa-miR-1233-5p 1 0 0
chr21:46004519|46004862 hsa-miR-4763-3p 1 0 0
chr21:46004519|46004862 hsa-miR-6778-5p 1 0 0
chr21:46004519|46004862 hsa-miR-6787-5p 1 0 0
chr21:46004519|46004862 hsa-miR-6812-5p 1 0 0
chr21:46004519|46004862 hsa-miR-6870-5p 1 0 0
chr21:46004519|46004862 hsa-miR-6743-5p 1 0 0
chr21:46004519|46004862 hsa-miR-6752-5p 1 0 0
chr21:46004519|46004862 hsa-miR-6756-5p 1 0 0
chr21:46004519|46004862 hsa-miR-6813-5p 1 0 0
chr21:46004519|46004862 hsa-miR-1249-5p 1 1 0
chr21:46004519|46004862 hsa-miR-6779-5p 1 0 0
chr21:46004519|46004862 hsa-miR-6780a-5p 1 1 0
chr21:46004519|46004862 hsa-miR-6788-5p 1 0 0
chr21:46004519|46004862 hsa-miR-6797-5p 1 1 0
chr21:46004519|46004862 hsa-miR-7111-5p 1 0 0
chr21:46004519|46004862 hsa-miR-4728-5p 1 1 0
chr21:46004519|46004862 hsa-miR-5196-5p 1 0 0
chr21:46004519|46004862 hsa-miR-6836-5p 1 0 0
chr21:46004519|46004862 hsa-miR-10396a-5p 1 0 0
chr21:46004519|46004862 hsa-miR-10396b-5p 1 0 0
chr21:46004519|46004862 hsa-miR-328-5p 1 0 0
chr21:46004519|46004862 hsa-miR-4685-5p 1 1 0
chr21:46004519|46004862 hsa-miR-6848-5p 1 0 0
chr21:46004519|46004862 hsa-miR-6858-5p 1 1 0
chr21:46004519|46004862 hsa-miR-6883-5p 0 1 0
chr21:46004519|46004862 hsa-miR-6887-5p 1 0 0
chr21:46004519|46004862 hsa-miR-939-5p 1 0 0
chr21:46004519|46004862 hsa-miR-1266-5p 1 0 0
chr21:46004519|46004862 hsa-miR-6856-5p 1 0 0
chr21:46004519|46004862 hsa-miR-6855-5p 1 0 0
chr21:46004519|46004862 hsa-miR-6791-3p 1 0 0
chr21:46004519|46004862 hsa-miR-4646-5p 1 0 0
chr21:46004519|46004862 hsa-miR-6785-5p 0 1 0
chr21:46004519|46004862 hsa-miR-6791-5p 1 0 0
chr21:46004519|46004862 hsa-miR-6801-3p 0 1 0
chr21:46004519|46004862 hsa-miR-6829-3p 0 1 0
chr21:46004519|46004862 hsa-miR-6837-5p 1 1 0
chr21:46004519|46004862 hsa-miR-3150b-5p 1 0 0
chr21:46004519|46004862 hsa-miR-4485-3p 0 1 0
chr21:46004519|46004862 hsa-miR-128-2-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr21:46004519|46004862
ORF Type ORF1
Protein Length 40
Nucleotide Length 123
Protein Sequence MGNQGQEAVADINLGDSAPSPEGPAGDRPGPWPYSPGGRC
Nucleotide Sequence TTGGGAAACCAAGGTCAGGAGGCCGTTGCAGACATAAATCTCGGCGACTCGGCCCCGTCTCCTGAGGGTCCTGCTGGTGACCGGCCTGGACCTTGGCCCTACAGCCCTGGAGGCCGCTGCTGA
CircID chr21:46004519|46004862
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MAALKTLEINGANPVCSSLPQRLGPGLDMRA
Nucleotide Sequence CTGGCTGCACTCAAGACCCTCGAGATTAACGGTGCTAACCCCGTCTGCTCCTCCCTCCCGCAGAGACTGGGGCCTGGACTGGACATGAGAGCC
CircID chr21:46004519|46004862
ORF Type ORF3
Protein Length 52
Nucleotide Length 159
Protein Sequence MALQPWRPLLTSTDPDLREYSQGRWLHSRPSRLTVLTPSAPPSRRDWGLDWT
Nucleotide Sequence TTGGCCCTACAGCCCTGGAGGCCGCTGCTGACCAGCACTGACCCCGACCTCAGAGAGTACTCGCAGGGGCGCTGGCTGCACTCAAGACCCTCGAGATTAACGGTGCTAACCCCGTCTGCTCCTCCCTCCCGCAGAGACTGGGGCCTGGACTGGACATGA
CircID chr21:46004519|46004862
ORF Type ORF4
Protein Length 92
Nucleotide Length 279
Protein Sequence MREGGADGVSTVNLEGLECSQRPCEYSLRSGSVLVSSGLQGCRAKVQAGHQQDPQETGPSRRDLCLQRPPDLGFPKRDRGQWLPQAEEKSLL
Nucleotide Sequence CTGCGGGAGGGAGGAGCAGACGGGGTTAGCACCGTTAATCTCGAGGGTCTTGAGTGCAGCCAGCGCCCCTGCGAGTACTCTCTGAGGTCGGGGTCAGTGCTGGTCAGCAGCGGCCTCCAGGGCTGTAGGGCCAAGGTCCAGGCCGGTCACCAGCAGGACCCTCAGGAGACGGGGCCGAGTCGCCGAGATTTATGTCTGCAACGGCCTCCTGACCTTGGTTTCCCAAAACGAGACAGAGGCCAATGGCTGCCCCAAGCTGAGGAGAAGAGCTTGCTTTGA
CircID chr21:46004519|46004862
ORF Type ORF5
Protein Length 35
Nucleotide Length 108
Protein Sequence MSSPGPSLCGREEQTGLAPLISRVLSAASAPASTL
Nucleotide Sequence ATGTCCAGTCCAGGCCCCAGTCTCTGCGGGAGGGAGGAGCAGACGGGGTTAGCACCGTTAATCTCGAGGGTCTTGAGTGCAGCCAGCGCCCCTGCGAGTACTCTCTGA
CircID chr21:46004519|46004862
ORF Type ORF6
Protein Length 32
Nucleotide Length 99
Protein Sequence MTLVSQNETEANGCPKLRRRACFEFNCKVTVR
Nucleotide Sequence CTGACCTTGGTTTCCCAAAACGAGACAGAGGCCAATGGCTGCCCCAAGCTGAGGAGAAGAGCTTGCTTTGAGTTTAATTGTAAAGTAACTGTTAGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab